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Spg030631 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030631
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:35843895..35847063
RNA-Seq ExpressionSpg030631
SyntenySpg030631
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]6.3e-1848.76Show/hide
Query:  MTDMLSPRLYGTVCTQVEIELPVPDTLPTYAESSRTSSSTWVELYIESVDI-------------VNVLFTVQEGQRVSLEEDDVRWLHAIFRAKLAGGPG
        MT++LS RLYGTVCTQV+IELP+PDTLPT AESS ++ +TW+ELY ESV +             ++++F V  G    +  DDV WLHA+FR K A  PG
Subjt:  MTDMLSPRLYGTVCTQVEIELPVPDTLPTYAESSRTSSSTWVELYIESVDI-------------VNVLFTVQEGQRVSLEEDDVRWLHAIFRAKLAGGPG

Query:  GDTITTKVTPYYQRD--PPGT
               VT +YQ    PP T
Subjt:  GDTITTKVTPYYQRD--PPGT

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]5.0e-1548.04Show/hide
Query:  VEIELPVPDTLPTYAESSRTSSSTWVELYIESVDI-------------VNVLFTVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGDTITTKVTPYYQRDP
        VEIELPVPDTLPT AESS ++SSTW+ELY ESV +             ++++F+V  G    +  DDV WLHA+FRAK  GGPGG   T +   +   D 
Subjt:  VEIELPVPDTLPTYAESSRTSSSTWVELYIESVDI-------------VNVLFTVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGDTITTKVTPYYQRDP

Query:  PG
         G
Subjt:  PG

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]3.3e-1956.19Show/hide
Query:  MTDMLSPRLYGTVCTQ-----------------VEIELPVPDTLPTYAESSRTSSSTWVELYIESVDIVNVLFTVQEGQRVSLEEDDVRWLHAIFRAKLA
        MT++LSPRLYGTVCTQ                 VEIELPVPDTLPT AESS ++SSTW+ELY+E V +   +F +       + EDDV WLHA+FRAK A
Subjt:  MTDMLSPRLYGTVCTQ-----------------VEIELPVPDTLPTYAESSRTSSSTWVELYIESVDIVNVLFTVQEGQRVSLEEDDVRWLHAIFRAKLA

Query:  GGPGG
        GGPGG
Subjt:  GGPGG

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.0e-1548.7Show/hide
Query:  MTDMLSPRLYGTVCTQ-----------------VEIELPVPDTLPTYAESSRTSSSTWVELYIESV----------DIVNVLFTVQEGQRVSLEEDDVRW
        MT++LS RL GTVCTQ                 VEIELPVPDTLPT AE   ++SSTW+ELY+ESV          D+    +   EG    +  DDV W
Subjt:  MTDMLSPRLYGTVCTQ-----------------VEIELPVPDTLPTYAESSRTSSSTWVELYIESV----------DIVNVLFTVQEGQRVSLEEDDVRW

Query:  LHAIFRAKLAGGPGG
        LHA+FRAK AGGP G
Subjt:  LHAIFRAKLAGGPGG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]3.3e-1956.19Show/hide
Query:  MTDMLSPRLYGTVCTQ-----------------VEIELPVPDTLPTYAESSRTSSSTWVELYIESVDIVNVLFTVQEGQRVSLEEDDVRWLHAIFRAKLA
        MT++LSPRLYGTVCTQ                 VEIELPVPDTLPT AESS ++SSTW+ELY+E V +   +F +       + EDDV WLHA+FRAK A
Subjt:  MTDMLSPRLYGTVCTQ-----------------VEIELPVPDTLPTYAESSRTSSSTWVELYIESVDIVNVLFTVQEGQRVSLEEDDVRWLHAIFRAKLA

Query:  GGPGG
        GGPGG
Subjt:  GGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein3.1e-1848.76Show/hide
Query:  MTDMLSPRLYGTVCTQVEIELPVPDTLPTYAESSRTSSSTWVELYIESVDI-------------VNVLFTVQEGQRVSLEEDDVRWLHAIFRAKLAGGPG
        MT++LS RLYGTVCTQV+IELP+PDTLPT AESS ++ +TW+ELY ESV +             ++++F V  G    +  DDV WLHA+FR K A  PG
Subjt:  MTDMLSPRLYGTVCTQVEIELPVPDTLPTYAESSRTSSSTWVELYIESVDI-------------VNVLFTVQEGQRVSLEEDDVRWLHAIFRAKLAGGPG

Query:  GDTITTKVTPYYQRD--PPGT
               VT +YQ    PP T
Subjt:  GDTITTKVTPYYQRD--PPGT

A0A5A7V9N3 Reverse transcriptase2.4e-1548.04Show/hide
Query:  VEIELPVPDTLPTYAESSRTSSSTWVELYIESVDI-------------VNVLFTVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGDTITTKVTPYYQRDP
        VEIELPVPDTLPT AESS ++SSTW+ELY ESV +             ++++F+V  G    +  DDV WLHA+FRAK  GGPGG   T +   +   D 
Subjt:  VEIELPVPDTLPTYAESSRTSSSTWVELYIESVDI-------------VNVLFTVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGDTITTKVTPYYQRDP

Query:  PG
         G
Subjt:  PG

A0A5A7VMG9 Reverse transcriptase1.6e-1956.19Show/hide
Query:  MTDMLSPRLYGTVCTQ-----------------VEIELPVPDTLPTYAESSRTSSSTWVELYIESVDIVNVLFTVQEGQRVSLEEDDVRWLHAIFRAKLA
        MT++LSPRLYGTVCTQ                 VEIELPVPDTLPT AESS ++SSTW+ELY+E V +   +F +       + EDDV WLHA+FRAK A
Subjt:  MTDMLSPRLYGTVCTQ-----------------VEIELPVPDTLPTYAESSRTSSSTWVELYIESVDIVNVLFTVQEGQRVSLEEDDVRWLHAIFRAKLA

Query:  GGPGG
        GGPGG
Subjt:  GGPGG

A0A5D3CCC7 DNA/RNA polymerases superfamily protein4.9e-1648.7Show/hide
Query:  MTDMLSPRLYGTVCTQ-----------------VEIELPVPDTLPTYAESSRTSSSTWVELYIESV----------DIVNVLFTVQEGQRVSLEEDDVRW
        MT++LS RL GTVCTQ                 VEIELPVPDTLPT AE   ++SSTW+ELY+ESV          D+    +   EG    +  DDV W
Subjt:  MTDMLSPRLYGTVCTQ-----------------VEIELPVPDTLPTYAESSRTSSSTWVELYIESV----------DIVNVLFTVQEGQRVSLEEDDVRW

Query:  LHAIFRAKLAGGPGG
        LHA+FRAK AGGP G
Subjt:  LHAIFRAKLAGGPGG

A0A5D3DX39 Reverse transcriptase1.6e-1956.19Show/hide
Query:  MTDMLSPRLYGTVCTQ-----------------VEIELPVPDTLPTYAESSRTSSSTWVELYIESVDIVNVLFTVQEGQRVSLEEDDVRWLHAIFRAKLA
        MT++LSPRLYGTVCTQ                 VEIELPVPDTLPT AESS ++SSTW+ELY+E V +   +F +       + EDDV WLHA+FRAK A
Subjt:  MTDMLSPRLYGTVCTQ-----------------VEIELPVPDTLPTYAESSRTSSSTWVELYIESVDIVNVLFTVQEGQRVSLEEDDVRWLHAIFRAKLA

Query:  GGPGG
        GGPGG
Subjt:  GGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGATATGTTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTATGCTGAAAGTTCCAGAACAAG
CTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTGATATTGTAAATGTTTTGTTCACCGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGC
TTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGACACAATAACCACAAAGGTTACACCGTATTATCAGCGGGATCCTCCCGGAACTCCGGATGTTTTG
GAATATGTTTCAACTCCAATGAAGCTCTACCGATCAAGCTTAGGCAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGATATGTTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTATGCTGAAAGTTCCAGAACAAG
CTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTGATATTGTAAATGTTTTGTTCACCGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGC
TTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGACACAATAACCACAAAGGTTACACCGTATTATCAGCGGGATCCTCCCGGAACTCCGGATGTTTTG
GAATATGTTTCAACTCCAATGAAGCTCTACCGATCAAGCTTAGGCAATTGA
Protein sequenceShow/hide protein sequence
MTDMLSPRLYGTVCTQVEIELPVPDTLPTYAESSRTSSSTWVELYIESVDIVNVLFTVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGDTITTKVTPYYQRDPPGTPDVL
EYVSTPMKLYRSSLGN