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Spg030712 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030712
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRT_RNaseH_2 domain-containing protein
Genome locationscaffold11:27107368..27110589
RNA-Seq ExpressionSpg030712
SyntenySpg030712
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8718449.1 hypothetical protein F3Y22_tig00110013pilonHSYRG00240 [Hibiscus syriacus]1.7e-0525.15Show/hide
Query:  MVRKFYANINEDEGFQVMVRGVAMDWSLGAINFLFNLQEF--PHAGYNEMAVAPSNEQLNAAVREVGIEEAQWR--------------------------
        +V++FYANI++     + VRG  + ++  AIN  F+LQE    HA + E A    + + +  + ++  E  +W                           
Subjt:  MVRKFYANINEDEGFQVMVRGVAMDWSLGAINFLFNLQEF--PHAGYNEMAVAPSNEQLNAAVREVGIEEAQWR--------------------------

Query:  ------------------------LSLSIDVGKIVSSEIHNCWRKKVGKLFFPNTITMLCQRAGVPESKED
                                +S  IDVG+I+  ++H+C  KK   L FPN IT LC++  V E+  D
Subjt:  ------------------------LSLSIDVGKIVSSEIHNCWRKKVGKLFFPNTITMLCQRAGVPESKED

KAE8725369.1 hypothetical protein F3Y22_tig00008957pilonHSYRG00158 [Hibiscus syriacus]3.4e-0932.03Show/hide
Query:  MVRKFYANINEDEGFQVMVRGVAMDWSLGAINFLFNLQ--EFPHAGYNEMAVAPSNEQLNAAVREVGIEEAQW---RLSLSIDVGKIVSSEIHNCWRKKV
        +V++FY+NI E   + V+V G+++ ++  AIN  F LQ  E  HA + + A    NE     + ++ + + QW   ++S      + +  ++H C ++  
Subjt:  MVRKFYANINEDEGFQVMVRGVAMDWSLGAINFLFNLQ--EFPHAGYNEMAVAPSNEQLNAAVREVGIEEAQW---RLSLSIDVGKIVSSEIHNCWRKKV

Query:  GKLFFPNTITMLCQRAGVPESKEDIKLFDK------GIIDTRI--LLGYKGLK
          L FPN I  LC++  VPE     +LFD+      GI   +I  LLGYK LK
Subjt:  GKLFFPNTITMLCQRAGVPESKEDIKLFDK------GIIDTRI--LLGYKGLK

PON35554.1 hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii]2.2e-0827.93Show/hide
Query:  MVRKFYANINEDEGFQVMVRGVAMDWSLGAINFLFNLQEFPHAGYNEMAVAPSNEQLNAAVREVGIEEAQWRLSL-------------------------
        +VR+FYAN+ +     V VRGV + WS  AIN +F L + P   ++E     +   L   +  V +  A+W +S                          
Subjt:  MVRKFYANINEDEGFQVMVRGVAMDWSLGAINFLFNLQEFPHAGYNEMAVAPSNEQLNAAVREVGIEEAQWRLSL-------------------------

Query:  -------------------------SIDVGKIVSSEIHNCWRKKVGKLFFPNTITMLCQRAGVPESKEDIKLFDKGIID
                                 SI+VG+++ SEI  C  +K G LFFP+ IT LC+ A  P    + KL + G ID
Subjt:  -------------------------SIDVGKIVSSEIHNCWRKKVGKLFFPNTITMLCQRAGVPESKEDIKLFDKGIID

PON46472.1 hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]5.7e-0928.49Show/hide
Query:  MVRKFYANINEDEGFQVMVRGVAMDWSLGAINFLFNLQEFPHAGYNEMAVAPSNEQLNAAVREVGIEEAQWRLSL-------------------------
        +VR+FYAN+ + E   V VRGV + WS  AIN +F L + P   ++E     + + L   +  V    A+W +S                          
Subjt:  MVRKFYANINEDEGFQVMVRGVAMDWSLGAINFLFNLQEFPHAGYNEMAVAPSNEQLNAAVREVGIEEAQWRLSL-------------------------

Query:  -------------------------SIDVGKIVSSEIHNCWRKKVGKLFFPNTITMLCQRAGVPESKEDIKLFDKGIID
                                 SI+VG+++ SEI  C  +K G LFFP+ IT LC+ A  P    + KL + G ID
Subjt:  -------------------------SIDVGKIVSSEIHNCWRKKVGKLFFPNTITMLCQRAGVPESKEDIKLFDKGIID

PON78020.1 hypothetical protein PanWU01x14_023740 [Parasponia andersonii]3.2e-0727.93Show/hide
Query:  MVRKFYANINEDEGFQVMVRGVAMDWSLGAINFLFNLQEFPHAGYNEMAVAPSNEQLNAAVREVGIEEAQWRLSL-------------------------
        +VR+FYAN+ + E   + VRGV + WS  AIN +F L + P   ++E     +  +L   +  V    A+W +S                          
Subjt:  MVRKFYANINEDEGFQVMVRGVAMDWSLGAINFLFNLQEFPHAGYNEMAVAPSNEQLNAAVREVGIEEAQWRLSL-------------------------

Query:  -------------------------SIDVGKIVSSEIHNCWRKKVGKLFFPNTITMLCQRAGVPESKEDIKLFDKGIID
                                 SI+VG+++ SEI  C  +K G LFFP+ IT LC+ A  P    + KL + G ID
Subjt:  -------------------------SIDVGKIVSSEIHNCWRKKVGKLFFPNTITMLCQRAGVPESKEDIKLFDKGIID

TrEMBL top hitse value%identityAlignment
A0A2P5AGA5 Uncharacterized protein (Fragment)1.1e-0827.93Show/hide
Query:  MVRKFYANINEDEGFQVMVRGVAMDWSLGAINFLFNLQEFPHAGYNEMAVAPSNEQLNAAVREVGIEEAQWRLSL-------------------------
        +VR+FYAN+ +     V VRGV + WS  AIN +F L + P   ++E     +   L   +  V +  A+W +S                          
Subjt:  MVRKFYANINEDEGFQVMVRGVAMDWSLGAINFLFNLQEFPHAGYNEMAVAPSNEQLNAAVREVGIEEAQWRLSL-------------------------

Query:  -------------------------SIDVGKIVSSEIHNCWRKKVGKLFFPNTITMLCQRAGVPESKEDIKLFDKGIID
                                 SI+VG+++ SEI  C  +K G LFFP+ IT LC+ A  P    + KL + G ID
Subjt:  -------------------------SIDVGKIVSSEIHNCWRKKVGKLFFPNTITMLCQRAGVPESKEDIKLFDKGIID

A0A2P5BCG4 Uncharacterized protein (Fragment)2.8e-0928.49Show/hide
Query:  MVRKFYANINEDEGFQVMVRGVAMDWSLGAINFLFNLQEFPHAGYNEMAVAPSNEQLNAAVREVGIEEAQWRLSL-------------------------
        +VR+FYAN+ + E   V VRGV + WS  AIN +F L + P   ++E     + + L   +  V    A+W +S                          
Subjt:  MVRKFYANINEDEGFQVMVRGVAMDWSLGAINFLFNLQEFPHAGYNEMAVAPSNEQLNAAVREVGIEEAQWRLSL-------------------------

Query:  -------------------------SIDVGKIVSSEIHNCWRKKVGKLFFPNTITMLCQRAGVPESKEDIKLFDKGIID
                                 SI+VG+++ SEI  C  +K G LFFP+ IT LC+ A  P    + KL + G ID
Subjt:  -------------------------SIDVGKIVSSEIHNCWRKKVGKLFFPNTITMLCQRAGVPESKEDIKLFDKGIID

A0A2P5DXM3 Uncharacterized protein1.5e-0727.93Show/hide
Query:  MVRKFYANINEDEGFQVMVRGVAMDWSLGAINFLFNLQEFPHAGYNEMAVAPSNEQLNAAVREVGIEEAQWRLSL-------------------------
        +VR+FYAN+ + E   + VRGV + WS  AIN +F L + P   ++E     +  +L   +  V    A+W +S                          
Subjt:  MVRKFYANINEDEGFQVMVRGVAMDWSLGAINFLFNLQEFPHAGYNEMAVAPSNEQLNAAVREVGIEEAQWRLSL-------------------------

Query:  -------------------------SIDVGKIVSSEIHNCWRKKVGKLFFPNTITMLCQRAGVPESKEDIKLFDKGIID
                                 SI+VG+++ SEI  C  +K G LFFP+ IT LC+ A  P    + KL + G ID
Subjt:  -------------------------SIDVGKIVSSEIHNCWRKKVGKLFFPNTITMLCQRAGVPESKEDIKLFDKGIID

A0A6A3BU96 Uncharacterized protein8.4e-0625.15Show/hide
Query:  MVRKFYANINEDEGFQVMVRGVAMDWSLGAINFLFNLQEF--PHAGYNEMAVAPSNEQLNAAVREVGIEEAQWR--------------------------
        +V++FYANI++     + VRG  + ++  AIN  F+LQE    HA + E A    + + +  + ++  E  +W                           
Subjt:  MVRKFYANINEDEGFQVMVRGVAMDWSLGAINFLFNLQEF--PHAGYNEMAVAPSNEQLNAAVREVGIEEAQWR--------------------------

Query:  ------------------------LSLSIDVGKIVSSEIHNCWRKKVGKLFFPNTITMLCQRAGVPESKED
                                +S  IDVG+I+  ++H+C  KK   L FPN IT LC++  V E+  D
Subjt:  ------------------------LSLSIDVGKIVSSEIHNCWRKKVGKLFFPNTITMLCQRAGVPESKED

A0A6A3CE04 Uncharacterized protein1.6e-0932.03Show/hide
Query:  MVRKFYANINEDEGFQVMVRGVAMDWSLGAINFLFNLQ--EFPHAGYNEMAVAPSNEQLNAAVREVGIEEAQW---RLSLSIDVGKIVSSEIHNCWRKKV
        +V++FY+NI E   + V+V G+++ ++  AIN  F LQ  E  HA + + A    NE     + ++ + + QW   ++S      + +  ++H C ++  
Subjt:  MVRKFYANINEDEGFQVMVRGVAMDWSLGAINFLFNLQ--EFPHAGYNEMAVAPSNEQLNAAVREVGIEEAQW---RLSLSIDVGKIVSSEIHNCWRKKV

Query:  GKLFFPNTITMLCQRAGVPESKEDIKLFDK------GIIDTRI--LLGYKGLK
          L FPN I  LC++  VPE     +LFD+      GI   +I  LLGYK LK
Subjt:  GKLFFPNTITMLCQRAGVPESKEDIKLFDK------GIIDTRI--LLGYKGLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCGCAAGTTCTATGCGAACATTAATGAAGACGAAGGATTCCAGGTGATGGTTCGTGGCGTGGCGATGGATTGGAGCCTTGGAGCGATCAACTTCTTATTCAACCT
ACAAGAATTTCCTCACGCGGGCTATAATGAGATGGCAGTGGCGCCATCTAATGAGCAACTCAACGCGGCTGTGAGGGAGGTTGGTATAGAGGAGGCTCAATGGCGGCTGT
CTTTAAGCATTGATGTCGGAAAGATTGTCTCCAGTGAGATACACAATTGTTGGAGGAAAAAGGTAGGCAAACTTTTCTTCCCAAATACAATTACGATGTTATGCCAGAGG
GCAGGGGTTCCGGAGAGCAAAGAAGATATTAAACTATTTGACAAGGGGATTATAGACACACGAATCTTGCTAGGCTACAAAGGACTCAAGAAGTGTGCCAGGGATGCTCA
GGTAAAGGTTGAAGGTAGTGTTGGATTATCTGTTTTAATTGGTGAAATTAATGTTGAGCAGATTGAGGGAGCAAAGTTTGTTGATCCAACAAAGCTTTGTGCAAAACTGG
CCACAACTTCATTGGAGTTGAAACACATTCCAAATGATTCAGAGTTCCGGGAGGATCCTACTGATTGTGTATACTTGCACAGTCTTTTGGAGTTAATTTATCTTATATTC
TTAACCACTCCAGAAGGCAACAATACCTTATCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGCGCAAGTTCTATGCGAACATTAATGAAGACGAAGGATTCCAGGTGATGGTTCGTGGCGTGGCGATGGATTGGAGCCTTGGAGCGATCAACTTCTTATTCAACCT
ACAAGAATTTCCTCACGCGGGCTATAATGAGATGGCAGTGGCGCCATCTAATGAGCAACTCAACGCGGCTGTGAGGGAGGTTGGTATAGAGGAGGCTCAATGGCGGCTGT
CTTTAAGCATTGATGTCGGAAAGATTGTCTCCAGTGAGATACACAATTGTTGGAGGAAAAAGGTAGGCAAACTTTTCTTCCCAAATACAATTACGATGTTATGCCAGAGG
GCAGGGGTTCCGGAGAGCAAAGAAGATATTAAACTATTTGACAAGGGGATTATAGACACACGAATCTTGCTAGGCTACAAAGGACTCAAGAAGTGTGCCAGGGATGCTCA
GGTAAAGGTTGAAGGTAGTGTTGGATTATCTGTTTTAATTGGTGAAATTAATGTTGAGCAGATTGAGGGAGCAAAGTTTGTTGATCCAACAAAGCTTTGTGCAAAACTGG
CCACAACTTCATTGGAGTTGAAACACATTCCAAATGATTCAGAGTTCCGGGAGGATCCTACTGATTGTGTATACTTGCACAGTCTTTTGGAGTTAATTTATCTTATATTC
TTAACCACTCCAGAAGGCAACAATACCTTATCCTAG
Protein sequenceShow/hide protein sequence
MVRKFYANINEDEGFQVMVRGVAMDWSLGAINFLFNLQEFPHAGYNEMAVAPSNEQLNAAVREVGIEEAQWRLSLSIDVGKIVSSEIHNCWRKKVGKLFFPNTITMLCQR
AGVPESKEDIKLFDKGIIDTRILLGYKGLKKCARDAQVKVEGSVGLSVLIGEINVEQIEGAKFVDPTKLCAKLATTSLELKHIPNDSEFREDPTDCVYLHSLLELIYLIF
LTTPEGNNTLS