; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg030726 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030726
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA-directed RNA polymerase V subunit 5C-like
Genome locationscaffold11:28026926..28029248
RNA-Seq ExpressionSpg030726
SyntenySpg030726
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4375842.1 hypothetical protein G4B88_026421 [Cannabis sativa]1.3e-1535.57Show/hide
Query:  SDLKPKSAVWLHFIKNRLMPTTHDSTTSVERVMLLYSIMKGLKINIGSIIREEILSCGRKRAGKLFFGSLITQLCQRVKIVPGNDEEPTPPPGLTPTSPS
        +DLK       +F+++ L+PT+HDST S ER+ +LY I+KG KIN+G +I +EI  C  +  GKLFF  LIT+ C+   +   NDE+P P  G+    P 
Subjt:  SDLKPKSAVWLHFIKNRLMPTTHDSTTSVERVMLLYSIMKGLKINIGSIIREEILSCGRKRAGKLFFGSLITQLCQRVKIVPGNDEEPTPPPGLTPTSPS

Query:  QHTPVSKPTPSFAFRQLD--------------QIEDKLKAYWVYVKERD
        +    + P+ + A    D              Q+ ++L+ +W Y +ERD
Subjt:  QHTPVSKPTPSFAFRQLD--------------QIEDKLKAYWVYVKERD

PON46472.1 hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]2.6e-1630.73Show/hide
Query:  NDAIKNPSAKQMKEALKMVANKGVKWKKSQTKVKTLVLSDLKPKSAVWLHFIKNRLMPTTHDSTTSVERVMLLYSIMKGLKINIGSIIREEILSCGRKRA
        ++ I+N + + +   L+ VA  G +W  S     T + S L P + VW HF+K+RL+PTTH  T S +R++LL+S++ G  IN+G +I  EI +C  ++ 
Subjt:  NDAIKNPSAKQMKEALKMVANKGVKWKKSQTKVKTLVLSDLKPKSAVWLHFIKNRLMPTTHDSTTSVERVMLLYSIMKGLKINIGSIIREEILSCGRKRA

Query:  GKLFFGSLITQLCQRVKIVPGNDEEPTPPPGLT------------PTSPSQHTPVSKPTPSFAFRQLDQIEDKLKA------------------------
        G LFF SLIT+LC+  +     +EE     G              PT  +Q    S+P  + + R    I  +LKA                        
Subjt:  GKLFFGSLITQLCQRVKIVPGNDEEPTPPPGLT------------PTSPSQHTPVSKPTPSFAFRQLDQIEDKLKA------------------------

Query:  ----YWVYVKERDEAIRE
            +W Y KERD A+++
Subjt:  ----YWVYVKERDEAIRE

PON62892.1 hypothetical protein PanWU01x14_135680 [Parasponia andersonii]4.0e-1737.67Show/hide
Query:  DVNFQEKMEIMRKTDSQTGVYRIKAPL--HPRRNDAIKNPSAKQMKEALKMVANKGVKWKKSQTKVKTLVLSDLKPKSAVWLHFIKNRLMPTTHDSTTSV
        D  +   +++   T++   +Y +  P+  H    +AI  P   ++   L+ VA  G +W  S     T + S L P + VW HF+K+RL+PTTH  T S 
Subjt:  DVNFQEKMEIMRKTDSQTGVYRIKAPL--HPRRNDAIKNPSAKQMKEALKMVANKGVKWKKSQTKVKTLVLSDLKPKSAVWLHFIKNRLMPTTHDSTTSV

Query:  ERVMLLYSIMKGLKINIGSIIREEILSCGRKRAGKLFFGSLITQLC
        ERV+LLYS++ G  IN+G II  EI +   +++G LFF SLIT++C
Subjt:  ERVMLLYSIMKGLKINIGSIIREEILSCGRKRAGKLFFGSLITQLC

PON70375.1 hypothetical protein PanWU01x14_080440 [Parasponia andersonii]7.5e-1639.32Show/hide
Query:  NDAIKNPSAKQMKEALKMVANKGVKWKKSQTKVKTLVLSDLKPKSAVWLHFIKNRLMPTTHDSTTSVERVMLLYSIMKGLKINIGSIIREEILSCGRKRA
        ++ +++ +  ++   L+ VA  G +W  S     T + S L P + VW HF+K+RL+PTTH  T S E V LLYS++ G  IN+G +I  EI +C  +++
Subjt:  NDAIKNPSAKQMKEALKMVANKGVKWKKSQTKVKTLVLSDLKPKSAVWLHFIKNRLMPTTHDSTTSVERVMLLYSIMKGLKINIGSIIREEILSCGRKRA

Query:  GKLFFGSLITQLCQRVK
        G LFF SLIT +C+  +
Subjt:  GKLFFGSLITQLCQRVK

PON78020.1 hypothetical protein PanWU01x14_023740 [Parasponia andersonii]5.2e-1731.22Show/hide
Query:  NDAIKNPSAKQMKEALKMVANKGVKWKKSQTKVKTLVLSDLKPKSAVWLHFIKNRLMPTTHDSTTSVERVMLLYSIMKGLKINIGSIIREEILSCGRKRA
        ++ I+N +  ++   L+ VA  G +W  S     T + S L P + VW HF+K+RL+PTTH    S +R++LL+S++ G  IN+G +I  EI +C  ++ 
Subjt:  NDAIKNPSAKQMKEALKMVANKGVKWKKSQTKVKTLVLSDLKPKSAVWLHFIKNRLMPTTHDSTTSVERVMLLYSIMKGLKINIGSIIREEILSCGRKRA

Query:  GKLFFGSLITQLCQRVKIVPGNDE-------EPTPPPGLT---PTSPSQHTPVSKPTPSFAFR-------QLDQIEDKL----------KAYWVYVKERD
        G LFF SLIT+LC+    +   ++       +      +T   PT  +Q    S+P  + + R       QL  +E +L          + +W Y KERD
Subjt:  GKLFFGSLITQLCQRVKIVPGNDE-------EPTPPPGLT---PTSPSQHTPVSKPTPSFAFR-------QLDQIEDKL----------KAYWVYVKERD

Query:  EAIRE
         A+++
Subjt:  EAIRE

TrEMBL top hitse value%identityAlignment
A0A2P5BCG4 Uncharacterized protein (Fragment)1.2e-1630.73Show/hide
Query:  NDAIKNPSAKQMKEALKMVANKGVKWKKSQTKVKTLVLSDLKPKSAVWLHFIKNRLMPTTHDSTTSVERVMLLYSIMKGLKINIGSIIREEILSCGRKRA
        ++ I+N + + +   L+ VA  G +W  S     T + S L P + VW HF+K+RL+PTTH  T S +R++LL+S++ G  IN+G +I  EI +C  ++ 
Subjt:  NDAIKNPSAKQMKEALKMVANKGVKWKKSQTKVKTLVLSDLKPKSAVWLHFIKNRLMPTTHDSTTSVERVMLLYSIMKGLKINIGSIIREEILSCGRKRA

Query:  GKLFFGSLITQLCQRVKIVPGNDEEPTPPPGLT------------PTSPSQHTPVSKPTPSFAFRQLDQIEDKLKA------------------------
        G LFF SLIT+LC+  +     +EE     G              PT  +Q    S+P  + + R    I  +LKA                        
Subjt:  GKLFFGSLITQLCQRVKIVPGNDEEPTPPPGLT------------PTSPSQHTPVSKPTPSFAFRQLDQIEDKLKA------------------------

Query:  ----YWVYVKERDEAIRE
            +W Y KERD A+++
Subjt:  ----YWVYVKERDEAIRE

A0A2P5CPE8 Uncharacterized protein1.9e-1737.67Show/hide
Query:  DVNFQEKMEIMRKTDSQTGVYRIKAPL--HPRRNDAIKNPSAKQMKEALKMVANKGVKWKKSQTKVKTLVLSDLKPKSAVWLHFIKNRLMPTTHDSTTSV
        D  +   +++   T++   +Y +  P+  H    +AI  P   ++   L+ VA  G +W  S     T + S L P + VW HF+K+RL+PTTH  T S 
Subjt:  DVNFQEKMEIMRKTDSQTGVYRIKAPL--HPRRNDAIKNPSAKQMKEALKMVANKGVKWKKSQTKVKTLVLSDLKPKSAVWLHFIKNRLMPTTHDSTTSV

Query:  ERVMLLYSIMKGLKINIGSIIREEILSCGRKRAGKLFFGSLITQLC
        ERV+LLYS++ G  IN+G II  EI +   +++G LFF SLIT++C
Subjt:  ERVMLLYSIMKGLKINIGSIIREEILSCGRKRAGKLFFGSLITQLC

A0A2P5DAQ2 Uncharacterized protein3.6e-1639.32Show/hide
Query:  NDAIKNPSAKQMKEALKMVANKGVKWKKSQTKVKTLVLSDLKPKSAVWLHFIKNRLMPTTHDSTTSVERVMLLYSIMKGLKINIGSIIREEILSCGRKRA
        ++ +++ +  ++   L+ VA  G +W  S     T + S L P + VW HF+K+RL+PTTH  T S E V LLYS++ G  IN+G +I  EI +C  +++
Subjt:  NDAIKNPSAKQMKEALKMVANKGVKWKKSQTKVKTLVLSDLKPKSAVWLHFIKNRLMPTTHDSTTSVERVMLLYSIMKGLKINIGSIIREEILSCGRKRA

Query:  GKLFFGSLITQLCQRVK
        G LFF SLIT +C+  +
Subjt:  GKLFFGSLITQLCQRVK

A0A2P5DXM3 Uncharacterized protein2.5e-1731.22Show/hide
Query:  NDAIKNPSAKQMKEALKMVANKGVKWKKSQTKVKTLVLSDLKPKSAVWLHFIKNRLMPTTHDSTTSVERVMLLYSIMKGLKINIGSIIREEILSCGRKRA
        ++ I+N +  ++   L+ VA  G +W  S     T + S L P + VW HF+K+RL+PTTH    S +R++LL+S++ G  IN+G +I  EI +C  ++ 
Subjt:  NDAIKNPSAKQMKEALKMVANKGVKWKKSQTKVKTLVLSDLKPKSAVWLHFIKNRLMPTTHDSTTSVERVMLLYSIMKGLKINIGSIIREEILSCGRKRA

Query:  GKLFFGSLITQLCQRVKIVPGNDE-------EPTPPPGLT---PTSPSQHTPVSKPTPSFAFR-------QLDQIEDKL----------KAYWVYVKERD
        G LFF SLIT+LC+    +   ++       +      +T   PT  +Q    S+P  + + R       QL  +E +L          + +W Y KERD
Subjt:  GKLFFGSLITQLCQRVKIVPGNDE-------EPTPPPGLT---PTSPSQHTPVSKPTPSFAFR-------QLDQIEDKL----------KAYWVYVKERD

Query:  EAIRE
         A+++
Subjt:  EAIRE

A0A7J6FZ22 Uncharacterized protein6.2e-1635.57Show/hide
Query:  SDLKPKSAVWLHFIKNRLMPTTHDSTTSVERVMLLYSIMKGLKINIGSIIREEILSCGRKRAGKLFFGSLITQLCQRVKIVPGNDEEPTPPPGLTPTSPS
        +DLK       +F+++ L+PT+HDST S ER+ +LY I+KG KIN+G +I +EI  C  +  GKLFF  LIT+ C+   +   NDE+P P  G+    P 
Subjt:  SDLKPKSAVWLHFIKNRLMPTTHDSTTSVERVMLLYSIMKGLKINIGSIIREEILSCGRKRAGKLFFGSLITQLCQRVKIVPGNDEEPTPPPGLTPTSPS

Query:  QHTPVSKPTPSFAFRQLD--------------QIEDKLKAYWVYVKERD
        +    + P+ + A    D              Q+ ++L+ +W Y +ERD
Subjt:  QHTPVSKPTPSFAFRQLD--------------QIEDKLKAYWVYVKERD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGACCACTTCAAGAGAGAATCCGAGTAGTTCTCGAAAAAGAAGATCCACGCCCTATGTTTCTCTCCATAAAACCCAAAAACCTGCGGGCCAACAACTGAGAAAACG
CTCGAGGGAATGGTTTGCGATGATCCGAGAGATGGGAGCCCAAAGATGTGAGGCACTTGAAGAAGAAGCTCGATTGCCTGTTGCTGAAGAATCCGCCAAAATGAGAGAAA
GCTCTCAGCAAAGAGAGACTTCATCGGGTAAGGCCTTCAAACCTTCTACTAATCCAACTTCTTCTTGCAGGGACAAGCCTTTTGTAACTTATAATGCAAGAAAGAAGGAT
TCCAAGAAGGATGCACTCGAAAAGCCTTTGATCATTGAGCCCCTTAAAGTAGCTAGAATGTTGCCAGATGTGTTCGAAGAGATGATCCAACAGGCCGTTAGTATGAGGGA
AGAAGATGAGTTTGCGAGAAAAAGAGACTTGGAAGAGGAAGAGGAAGCAGAGAAAAAGAAAGAAGAAGAAAGACAAGAGGCCGAGAGGGCCATTCAAGCTGGGAAACAGA
AAAAAGAAGACGAAGAACTCAAGAGTCAGGCTGAACAACTGCAAGAAGTTGAAGAAGAGGCCCTTGGAGGGCCAAGTGAAGAAAAATTAGAAAAAGAAAAAGAGGAAGAA
ATCAAAGGCCAGAATGAGACTGCATTTGGGCCGCATTCTGAGGAAGGCCAGGAAAAAGCCACTGAAGGGAACCAGGCTGATGAGGCCTTTGATCCACTGTTCAAATATGA
TATCAGAGGACCTCCACTAGCTGCTGATAGCACCTCTTCAAGAGAGAAGAAGGATGAAGAGGAAATTGAAAAAAAAGAGGCCAAGACCTCTAGCGATAGCGAAACCGATT
CAGATTTTGAGATAAAGGAATTGGATGACGACCAAATTCCTATCTCTACAGATTTGGGGAAGAAAAAAAGAAGAGAACTGAGGGTCGAGAGGAGGACGAAGAATAAGAAT
GACCCTATTTTTGCCATGAGGCCGAGGACAAGGTCCATGGACGCCTCTCCTGCAGCTCCTCCTACCTCCACACCTGTCAAACCAAAGACCAAATCGCCCAAAGCTCCATC
ACCAAAGAATCCGTTCCCAGAAGTCTTCAAGGATGTAAATTTCCAAGAGAAGATGGAGATAATGAGAAAGACGGATTCTCAAACAGGGGTGTACCGGATCAAGGCACCCT
TGCATCCAAGAAGGAATGATGCCATCAAGAACCCCTCGGCCAAACAGATGAAAGAAGCATTAAAAATGGTGGCCAACAAGGGAGTTAAATGGAAGAAGTCTCAAACAAAG
GTAAAGACATTAGTGCTCAGTGATCTCAAGCCAAAATCGGCAGTGTGGCTTCACTTCATCAAGAATAGATTGATGCCCACAACCCACGACAGTACCACTTCAGTAGAGAG
GGTTATGCTTCTTTACAGCATCATGAAGGGGTTAAAGATAAATATAGGGAGCATCATCAGAGAAGAGATCCTTTCCTGTGGAAGGAAGAGAGCGGGGAAGTTGTTCTTTG
GGTCACTGATTACCCAGTTATGTCAGAGGGTGAAGATAGTTCCTGGAAACGATGAGGAACCTACTCCACCACCGGGATTGACACCTACTTCACCTTCTCAGCACACTCCA
GTTTCAAAGCCCACACCATCATTTGCCTTCCGACAGCTAGACCAGATCGAAGACAAGCTGAAAGCTTATTGGGTCTATGTTAAGGAGAGAGATGAAGCTATTAGAGAGTT
CTACCTCTCTATCGCCCCTAGCATCGTGGTGCGGCAGAGGCTGAATGATGGATGCAAGATAAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGACCACTTCAAGAGAGAATCCGAGTAGTTCTCGAAAAAGAAGATCCACGCCCTATGTTTCTCTCCATAAAACCCAAAAACCTGCGGGCCAACAACTGAGAAAACG
CTCGAGGGAATGGTTTGCGATGATCCGAGAGATGGGAGCCCAAAGATGTGAGGCACTTGAAGAAGAAGCTCGATTGCCTGTTGCTGAAGAATCCGCCAAAATGAGAGAAA
GCTCTCAGCAAAGAGAGACTTCATCGGGTAAGGCCTTCAAACCTTCTACTAATCCAACTTCTTCTTGCAGGGACAAGCCTTTTGTAACTTATAATGCAAGAAAGAAGGAT
TCCAAGAAGGATGCACTCGAAAAGCCTTTGATCATTGAGCCCCTTAAAGTAGCTAGAATGTTGCCAGATGTGTTCGAAGAGATGATCCAACAGGCCGTTAGTATGAGGGA
AGAAGATGAGTTTGCGAGAAAAAGAGACTTGGAAGAGGAAGAGGAAGCAGAGAAAAAGAAAGAAGAAGAAAGACAAGAGGCCGAGAGGGCCATTCAAGCTGGGAAACAGA
AAAAAGAAGACGAAGAACTCAAGAGTCAGGCTGAACAACTGCAAGAAGTTGAAGAAGAGGCCCTTGGAGGGCCAAGTGAAGAAAAATTAGAAAAAGAAAAAGAGGAAGAA
ATCAAAGGCCAGAATGAGACTGCATTTGGGCCGCATTCTGAGGAAGGCCAGGAAAAAGCCACTGAAGGGAACCAGGCTGATGAGGCCTTTGATCCACTGTTCAAATATGA
TATCAGAGGACCTCCACTAGCTGCTGATAGCACCTCTTCAAGAGAGAAGAAGGATGAAGAGGAAATTGAAAAAAAAGAGGCCAAGACCTCTAGCGATAGCGAAACCGATT
CAGATTTTGAGATAAAGGAATTGGATGACGACCAAATTCCTATCTCTACAGATTTGGGGAAGAAAAAAAGAAGAGAACTGAGGGTCGAGAGGAGGACGAAGAATAAGAAT
GACCCTATTTTTGCCATGAGGCCGAGGACAAGGTCCATGGACGCCTCTCCTGCAGCTCCTCCTACCTCCACACCTGTCAAACCAAAGACCAAATCGCCCAAAGCTCCATC
ACCAAAGAATCCGTTCCCAGAAGTCTTCAAGGATGTAAATTTCCAAGAGAAGATGGAGATAATGAGAAAGACGGATTCTCAAACAGGGGTGTACCGGATCAAGGCACCCT
TGCATCCAAGAAGGAATGATGCCATCAAGAACCCCTCGGCCAAACAGATGAAAGAAGCATTAAAAATGGTGGCCAACAAGGGAGTTAAATGGAAGAAGTCTCAAACAAAG
GTAAAGACATTAGTGCTCAGTGATCTCAAGCCAAAATCGGCAGTGTGGCTTCACTTCATCAAGAATAGATTGATGCCCACAACCCACGACAGTACCACTTCAGTAGAGAG
GGTTATGCTTCTTTACAGCATCATGAAGGGGTTAAAGATAAATATAGGGAGCATCATCAGAGAAGAGATCCTTTCCTGTGGAAGGAAGAGAGCGGGGAAGTTGTTCTTTG
GGTCACTGATTACCCAGTTATGTCAGAGGGTGAAGATAGTTCCTGGAAACGATGAGGAACCTACTCCACCACCGGGATTGACACCTACTTCACCTTCTCAGCACACTCCA
GTTTCAAAGCCCACACCATCATTTGCCTTCCGACAGCTAGACCAGATCGAAGACAAGCTGAAAGCTTATTGGGTCTATGTTAAGGAGAGAGATGAAGCTATTAGAGAGTT
CTACCTCTCTATCGCCCCTAGCATCGTGGTGCGGCAGAGGCTGAATGATGGATGCAAGATAAGATGA
Protein sequenceShow/hide protein sequence
MSTTSRENPSSSRKRRSTPYVSLHKTQKPAGQQLRKRSREWFAMIREMGAQRCEALEEEARLPVAEESAKMRESSQQRETSSGKAFKPSTNPTSSCRDKPFVTYNARKKD
SKKDALEKPLIIEPLKVARMLPDVFEEMIQQAVSMREEDEFARKRDLEEEEEAEKKKEEERQEAERAIQAGKQKKEDEELKSQAEQLQEVEEEALGGPSEEKLEKEKEEE
IKGQNETAFGPHSEEGQEKATEGNQADEAFDPLFKYDIRGPPLAADSTSSREKKDEEEIEKKEAKTSSDSETDSDFEIKELDDDQIPISTDLGKKKRRELRVERRTKNKN
DPIFAMRPRTRSMDASPAAPPTSTPVKPKTKSPKAPSPKNPFPEVFKDVNFQEKMEIMRKTDSQTGVYRIKAPLHPRRNDAIKNPSAKQMKEALKMVANKGVKWKKSQTK
VKTLVLSDLKPKSAVWLHFIKNRLMPTTHDSTTSVERVMLLYSIMKGLKINIGSIIREEILSCGRKRAGKLFFGSLITQLCQRVKIVPGNDEEPTPPPGLTPTSPSQHTP
VSKPTPSFAFRQLDQIEDKLKAYWVYVKERDEAIREFYLSIAPSIVVRQRLNDGCKIR