; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg030741 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030741
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold11:24897793..24909851
RNA-Seq ExpressionSpg030741
SyntenySpg030741
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061346.1 uncharacterized protein E6C27_scaffold749G00290 [Cucumis melo var. makuwa]1.3e-1535.98Show/hide
Query:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKPGSTERQVSHNRSPRVRKFAI-V
        MS++   GK   +RLVEIEEQ+LYL EVPDS+RY+ESR+DEISEK   IDAV  R++GLP+QEL  RV+ LE       +  R +++ R      FA  +
Subjt:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKPGSTERQVSHNRSPRVRKFAI-V

Query:  TLCV-RMTSCSAMYLEITRYIGAGMRMGKASPSPPRPVNISSVGFYALKLVDNKCPLGLTGSSFRVLSEEQVRGCFIFKEKRKELVIFD
          CV  + S     LE+   +    R+           ++++     ++ + N+ P G   S  +V   E    C +   K  E  IFD
Subjt:  TLCV-RMTSCSAMYLEITRYIGAGMRMGKASPSPPRPVNISSVGFYALKLVDNKCPLGLTGSSFRVLSEEQVRGCFIFKEKRKELVIFD

KAA0065910.1 senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa]1.2e-1665.43Show/hide
Query:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKPGST
        MS+    GK+  +RLVEIEEQ+LYL EVPDS+RY+ESRLDEISEK+  IDAV  RI+GLP+QEL  RVETLE+  T  G T
Subjt:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKPGST

XP_022150099.1 uncharacterized protein LOC111018360 [Momordica charantia]3.8e-2677.11Show/hide
Query:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKPGSTER
        MS TKQ+ K+HV+RLVEIEEQLLYLREVPD +R +E+R+DE SEK GEIDAVNARIDGLP+Q++A+RVETLESKAT+PGS ER
Subjt:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKPGSTER

XP_022154605.1 uncharacterized protein LOC111021829 [Momordica charantia]1.3e-2677.11Show/hide
Query:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKPGSTER
        MSATKQ+ K+HV+RLVEIEEQLLYLREVPDS+R +E+R+DE SEK GEIDAVNAR+DGLP+Q++A+RVET ESKAT+PGS ER
Subjt:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKPGSTER

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]6.2e-2163.33Show/hide
Query:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKPGSTERQVSHNRS
        MS TKQ+GK+H++RLVEIEE+LL+LRE+PD++RYVESRLDEIS K   ID VNARIDGL ++EL +RVETLE K  +  + ER  S + S
Subjt:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKPGSTERQVSHNRS

TrEMBL top hitse value%identityAlignment
A0A5A7V4C9 Uncharacterized protein6.5e-1635.98Show/hide
Query:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKPGSTERQVSHNRSPRVRKFAI-V
        MS++   GK   +RLVEIEEQ+LYL EVPDS+RY+ESR+DEISEK   IDAV  R++GLP+QEL  RV+ LE       +  R +++ R      FA  +
Subjt:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKPGSTERQVSHNRSPRVRKFAI-V

Query:  TLCV-RMTSCSAMYLEITRYIGAGMRMGKASPSPPRPVNISSVGFYALKLVDNKCPLGLTGSSFRVLSEEQVRGCFIFKEKRKELVIFD
          CV  + S     LE+   +    R+           ++++     ++ + N+ P G   S  +V   E    C +   K  E  IFD
Subjt:  TLCV-RMTSCSAMYLEITRYIGAGMRMGKASPSPPRPVNISSVGFYALKLVDNKCPLGLTGSSFRVLSEEQVRGCFIFKEKRKELVIFD

A0A5A7VFC8 Senescence-specific cysteine protease sag395.9e-1765.43Show/hide
Query:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKPGST
        MS+    GK+  +RLVEIEEQ+LYL EVPDS+RY+ESRLDEISEK+  IDAV  RI+GLP+QEL  RVETLE+  T  G T
Subjt:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKPGST

A0A6J1D906 Reverse transcriptase1.8e-2677.11Show/hide
Query:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKPGSTER
        MS TKQ+ K+HV+RLVEIEEQLLYLREVPD +R +E+R+DE SEK GEIDAVNARIDGLP+Q++A+RVETLESKAT+PGS ER
Subjt:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKPGSTER

A0A6J1DK29 uncharacterized protein LOC1110218296.3e-2777.11Show/hide
Query:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKPGSTER
        MSATKQ+ K+HV+RLVEIEEQLLYLREVPDS+R +E+R+DE SEK GEIDAVNAR+DGLP+Q++A+RVET ESKAT+PGS ER
Subjt:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKPGSTER

A0A6J1DLQ6 uncharacterized protein LOC1110223203.0e-2163.33Show/hide
Query:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKPGSTERQVSHNRS
        MS TKQ+GK+H++RLVEIEE+LL+LRE+PD++RYVESRLDEIS K   ID VNARIDGL ++EL +RVETLE K  +  + ER  S + S
Subjt:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKPGSTERQVSHNRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGCGACCAAACAAATGGGCAAGACCCACGTTGAGCGACTCGTTGAGATAGAGGAACAGTTGCTGTATTTGAGGGAAGTACCTGACTCGGTACGATACGTCGAAAG
TCGACTTGATGAGATCTCTGAAAAGTTGGGCGAGATAGATGCAGTGAATGCCCGAATTGATGGGCTACCTGTACAAGAGTTGGCAATAAGGGTAGAGACCCTGGAAAGCA
AAGCTACAAAGCCTGGTAGCACTGAACGACAAGTGTCGCACAATCGCTCGCCCCGAGTTCGAAAGTTTGCAATTGTGACACTCTGCGTGCGTATGACTAGTTGCTCTGCT
ATGTACCTTGAGATTACTCGGTACATAGGGGCGGGGATGAGGATGGGGAAGGCTTCCCCATCTCCACCCCGCCCCGTGAACATCTCCAGTGTTGGGTTTTATGCCCTAAA
ACTCGTAGATAATAAATGTCCATTAGGTCTCACCGGTAGCTCATTTAGGGTGTTAAGTGAAGAACAAGTTCGGGGTTGCTTTATTTTCAAAGAAAAACGCAAGGAATTGG
TGATTTTCGATCAAGACTTCATTCAAGATGGATTTCTTTCTGGTCAGGATGTGTCGAATGTTGAAACCTTTGGCTTTAATCGCCATTCATCTTCTCTGTTTATCGAGTTG
TTGAGTGAAACTCGCCTCGGGTTGACATGCGGTAGCGGATTCCAATGGGGATTGGAGTGGATGGGGACTGTGAAGCACGTTGTGGACATGATTCATACCCTCCCTTGCCA
CTCCATAAACTTGAACTCCTCTCTTGTCGCCTCCATTGCTATGTATCGCCTCCATTGCTATGTATCGTGGCTTCCTCCCATTAAAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGGCGACCAAACAAATGGGCAAGACCCACGTTGAGCGACTCGTTGAGATAGAGGAACAGTTGCTGTATTTGAGGGAAGTACCTGACTCGGTACGATACGTCGAAAG
TCGACTTGATGAGATCTCTGAAAAGTTGGGCGAGATAGATGCAGTGAATGCCCGAATTGATGGGCTACCTGTACAAGAGTTGGCAATAAGGGTAGAGACCCTGGAAAGCA
AAGCTACAAAGCCTGGTAGCACTGAACGACAAGTGTCGCACAATCGCTCGCCCCGAGTTCGAAAGTTTGCAATTGTGACACTCTGCGTGCGTATGACTAGTTGCTCTGCT
ATGTACCTTGAGATTACTCGGTACATAGGGGCGGGGATGAGGATGGGGAAGGCTTCCCCATCTCCACCCCGCCCCGTGAACATCTCCAGTGTTGGGTTTTATGCCCTAAA
ACTCGTAGATAATAAATGTCCATTAGGTCTCACCGGTAGCTCATTTAGGGTGTTAAGTGAAGAACAAGTTCGGGGTTGCTTTATTTTCAAAGAAAAACGCAAGGAATTGG
TGATTTTCGATCAAGACTTCATTCAAGATGGATTTCTTTCTGGTCAGGATGTGTCGAATGTTGAAACCTTTGGCTTTAATCGCCATTCATCTTCTCTGTTTATCGAGTTG
TTGAGTGAAACTCGCCTCGGGTTGACATGCGGTAGCGGATTCCAATGGGGATTGGAGTGGATGGGGACTGTGAAGCACGTTGTGGACATGATTCATACCCTCCCTTGCCA
CTCCATAAACTTGAACTCCTCTCTTGTCGCCTCCATTGCTATGTATCGCCTCCATTGCTATGTATCGTGGCTTCCTCCCATTAAAAAATAG
Protein sequenceShow/hide protein sequence
MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKPGSTERQVSHNRSPRVRKFAIVTLCVRMTSCSA
MYLEITRYIGAGMRMGKASPSPPRPVNISSVGFYALKLVDNKCPLGLTGSSFRVLSEEQVRGCFIFKEKRKELVIFDQDFIQDGFLSGQDVSNVETFGFNRHSSSLFIEL
LSETRLGLTCGSGFQWGLEWMGTVKHVVDMIHTLPCHSINLNSSLVASIAMYRLHCYVSWLPPIKK