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Spg030749 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030749
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold11:25975147..25980313
RNA-Seq ExpressionSpg030749
SyntenySpg030749
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025994.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]6.7e-0773.68Show/hide
Query:  VRVANMPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        VRVA +PTQYA+ FGDKTEW AG+  TQ+GIHSFP LG
Subjt:  VRVANMPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG

KAA0040839.1 uncharacterized protein E6C27_scaffold333G00600 [Cucumis melo var. makuwa]2.1e-0565Show/hide
Query:  VRVANMPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEI
        VRVA +PTQYA+ FGDKT+W AG++ TQ+ IHSF  LG I
Subjt:  VRVANMPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEI

KAA0043328.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-0656.36Show/hide
Query:  KGSLQKGGPRTHSAWVRVANMPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEI
        +G L+  G R    ++RVA +PTQYA+ F DKTEW AG++ TQ+GIHSFP LG I
Subjt:  KGSLQKGGPRTHSAWVRVANMPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEI

KAA0065950.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]6.0e-0876.32Show/hide
Query:  VRVANMPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        VRVA +PTQYA+ FGDKTEW AG++ TQ+GIHSFPLLG
Subjt:  VRVANMPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG

TYK27885.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]3.3e-0652.63Show/hide
Query:  KGSLQKGGPRTHSAWVRVANMPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEIDE
        +G L+  G R    ++RVA  PTQYA+ F DKTEW AG++ TQ+GIH FP LG +D+
Subjt:  KGSLQKGGPRTHSAWVRVANMPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEIDE

TrEMBL top hitse value%identityAlignment
A0A5A7SJY0 Retrotransposon protein putative ty3-gypsy sub-class3.2e-0773.68Show/hide
Query:  VRVANMPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        VRVA +PTQYA+ FGDKTEW AG+  TQ+GIHSFP LG
Subjt:  VRVANMPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG

A0A5A7THR9 Uncharacterized protein1.0e-0565Show/hide
Query:  VRVANMPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEI
        VRVA +PTQYA+ FGDKT+W AG++ TQ+ IHSF  LG I
Subjt:  VRVANMPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEI

A0A5A7TKJ4 Gag/pol protein5.5e-0756.36Show/hide
Query:  KGSLQKGGPRTHSAWVRVANMPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEI
        +G L+  G R    ++RVA +PTQYA+ F DKTEW AG++ TQ+GIHSFP LG I
Subjt:  KGSLQKGGPRTHSAWVRVANMPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEI

A0A5A7VFG5 Ty1-copia retrotransposon protein2.9e-0876.32Show/hide
Query:  VRVANMPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        VRVA +PTQYA+ FGDKTEW AG++ TQ+GIHSFPLLG
Subjt:  VRVANMPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG

A0A5D3DX33 Retrovirus-related pol polyprotein from transposon tnt 1-941.6e-0652.63Show/hide
Query:  KGSLQKGGPRTHSAWVRVANMPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEIDE
        +G L+  G R    ++RVA  PTQYA+ F DKTEW AG++ TQ+GIH FP LG +D+
Subjt:  KGSLQKGGPRTHSAWVRVANMPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEIDE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAGGCACGCGCCTGGCGTGGCAGGCCGAGGCTGACTGCCTCGGCCCCATCCCTTCCTTTGTCTTTTTCCCATTTGTCCTTTATGCTAACTGGATTCTCGATAGGCC
CAAAATTAGTCGGGTCCGAAGACGACGGAAGCCAAGCCGACGGAACAGAGGGCCGAAATTTCTACAGGCCCATGGGCATAACTCTCGGCCTCGGCCCATTGCCGAGGCCG
ACCAAGGCCAAAGGCCTGGAGACGAGCTGGAGTCCGGCGGCAGCGAAAACCCTAAGGGGAGTCTACAAAAAGGAGGACCACGCACGCATTCAGCATGGGTGAGAGTGGCC
AATATGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAATAGA
TGAGTATCAAATGGTGGTGTTCTTCGTTGGTGTAGAGCAATCAAGAATCATTCTTGAAGTATTCAGAGTCGTCAAGGGAGTTACAAATAATAATTATTTTGCGTTCTTTA
AGTTTCAAACTGGGGCGCTGGAGGAGTTGGTAGTGCGCGTTACTAGCATTCGGGTGCTGTTCAAGCTGGTTCGAGCCGGTTCTGGAGCTGTTCAAGACTCAGAAGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGCCAGGCACGCGCCTGGCGTGGCAGGCCGAGGCTGACTGCCTCGGCCCCATCCCTTCCTTTGTCTTTTTCCCATTTGTCCTTTATGCTAACTGGATTCTCGATAGGCC
CAAAATTAGTCGGGTCCGAAGACGACGGAAGCCAAGCCGACGGAACAGAGGGCCGAAATTTCTACAGGCCCATGGGCATAACTCTCGGCCTCGGCCCATTGCCGAGGCCG
ACCAAGGCCAAAGGCCTGGAGACGAGCTGGAGTCCGGCGGCAGCGAAAACCCTAAGGGGAGTCTACAAAAAGGAGGACCACGCACGCATTCAGCATGGGTGAGAGTGGCC
AATATGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAATAGA
TGAGTATCAAATGGTGGTGTTCTTCGTTGGTGTAGAGCAATCAAGAATCATTCTTGAAGTATTCAGAGTCGTCAAGGGAGTTACAAATAATAATTATTTTGCGTTCTTTA
AGTTTCAAACTGGGGCGCTGGAGGAGTTGGTAGTGCGCGTTACTAGCATTCGGGTGCTGTTCAAGCTGGTTCGAGCCGGTTCTGGAGCTGTTCAAGACTCAGAAGGATAA
Protein sequenceShow/hide protein sequence
MPGTRLAWQAEADCLGPIPSFVFFPFVLYANWILDRPKISRVRRRRKPSRRNRGPKFLQAHGHNSRPRPIAEADQGQRPGDELESGGSENPKGSLQKGGPRTHSAWVRVA
NMPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEIDEYQMVVFFVGVEQSRIILEVFRVVKGVTNNNYFAFFKFQTGALEELVVRVTSIRVLFKLVRAGSGAVQDSEG