CuGenDBv2

Gene ID	Spg030762
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RING-CH-type domain-containing protein
Genome location	scaffold11:25118292..25120051
RNA-Seq Expression	Spg030762
Synteny	Spg030762
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR022143 - Protein of unknown function DUF3675 IPR033275 - E3 ubiquitin-protein ligase MARCH-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022935629.1 uncharacterized protein LOC111442434 isoform X1 [Cucurbita moschata]

1.7e-22

79.76

Show/hide

Query:  FIVLLVLRHTLLILISGVGEYSLTLLMLLILRIVGILLPIYVMFRAFTSVR-RCHYQDPRLHLATSYDKSDSTNHSQPHLIQLR
        FIVLLVLRHTL I+ISG GEYSLTLLMLLILRIVGILLPIYVM RAFTS++ R HYQDPRLHLAT  D++DSTNH+Q H I +R
Subjt:  FIVLLVLRHTLLILISGVGEYSLTLLMLLILRIVGILLPIYVMFRAFTSVR-RCHYQDPRLHLATSYDKSDSTNHSQPHLIQLR

XP_022935642.1 uncharacterized protein LOC111442434 isoform X2 [Cucurbita moschata]

1.7e-22

79.76

Show/hide

Query:  FIVLLVLRHTLLILISGVGEYSLTLLMLLILRIVGILLPIYVMFRAFTSVR-RCHYQDPRLHLATSYDKSDSTNHSQPHLIQLR
        FIVLLVLRHTL I+ISG GEYSLTLLMLLILRIVGILLPIYVM RAFTS++ R HYQDPRLHLAT  D++DSTNH+Q H I +R
Subjt:  FIVLLVLRHTLLILISGVGEYSLTLLMLLILRIVGILLPIYVMFRAFTSVR-RCHYQDPRLHLATSYDKSDSTNHSQPHLIQLR

XP_023522591.1 uncharacterized protein LOC111786585 isoform X1 [Cucurbita pepo subsp. pepo]

1.1e-21

77.91

Show/hide

Query:  LQFIVLLVLRHTLLILISGVGEYSLTLLMLLILRIVGILLPIYVMFRAFTSV-RRCHYQDPRLHLATSYDKSDSTNHSQPHLIQLR
        + FIVLLVLRHTL I+ISG GEYSLTLLMLLILRIVGILLPIYVM R FTS+ RR HYQDP  HLATS D+SDST+HSQP  I +R
Subjt:  LQFIVLLVLRHTLLILISGVGEYSLTLLMLLILRIVGILLPIYVMFRAFTSV-RRCHYQDPRLHLATSYDKSDSTNHSQPHLIQLR

XP_023522598.1 uncharacterized protein LOC111786585 isoform X2 [Cucurbita pepo subsp. pepo]

1.1e-21

77.91

Show/hide

Query:  LQFIVLLVLRHTLLILISGVGEYSLTLLMLLILRIVGILLPIYVMFRAFTSV-RRCHYQDPRLHLATSYDKSDSTNHSQPHLIQLR
        + FIVLLVLRHTL I+ISG GEYSLTLLMLLILRIVGILLPIYVM R FTS+ RR HYQDP  HLATS D+SDST+HSQP  I +R
Subjt:  LQFIVLLVLRHTLLILISGVGEYSLTLLMLLILRIVGILLPIYVMFRAFTSV-RRCHYQDPRLHLATSYDKSDSTNHSQPHLIQLR

XP_023522606.1 uncharacterized protein LOC111786585 isoform X3 [Cucurbita pepo subsp. pepo]

1.1e-21

77.91

Show/hide

Query:  LQFIVLLVLRHTLLILISGVGEYSLTLLMLLILRIVGILLPIYVMFRAFTSV-RRCHYQDPRLHLATSYDKSDSTNHSQPHLIQLR
        + FIVLLVLRHTL I+ISG GEYSLTLLMLLILRIVGILLPIYVM R FTS+ RR HYQDP  HLATS D+SDST+HSQP  I +R
Subjt:  LQFIVLLVLRHTLLILISGVGEYSLTLLMLLILRIVGILLPIYVMFRAFTSV-RRCHYQDPRLHLATSYDKSDSTNHSQPHLIQLR

TrEMBL top hits

e value

%identity

Alignment

A0A6J1F655 uncharacterized protein LOC111442434 isoform X2

8.2e-23

79.76

Show/hide

Query:  FIVLLVLRHTLLILISGVGEYSLTLLMLLILRIVGILLPIYVMFRAFTSVR-RCHYQDPRLHLATSYDKSDSTNHSQPHLIQLR
        FIVLLVLRHTL I+ISG GEYSLTLLMLLILRIVGILLPIYVM RAFTS++ R HYQDPRLHLAT  D++DSTNH+Q H I +R
Subjt:  FIVLLVLRHTLLILISGVGEYSLTLLMLLILRIVGILLPIYVMFRAFTSVR-RCHYQDPRLHLATSYDKSDSTNHSQPHLIQLR

A0A6J1FB67 uncharacterized protein LOC111442434 isoform X1

8.2e-23

79.76

Show/hide

Query:  FIVLLVLRHTLLILISGVGEYSLTLLMLLILRIVGILLPIYVMFRAFTSVR-RCHYQDPRLHLATSYDKSDSTNHSQPHLIQLR
        FIVLLVLRHTL I+ISG GEYSLTLLMLLILRIVGILLPIYVM RAFTS++ R HYQDPRLHLAT  D++DSTNH+Q H I +R
Subjt:  FIVLLVLRHTLLILISGVGEYSLTLLMLLILRIVGILLPIYVMFRAFTSVR-RCHYQDPRLHLATSYDKSDSTNHSQPHLIQLR

A0A6J1GAC8 uncharacterized protein LOC111452226 isoform X2

2.6e-21

76.74

Show/hide

Query:  LQFIVLLVLRHTLLILISGVGEYSLTLLMLLILRIVGILLPIYVMFRAFTSV-RRCHYQDPRLHLATSYDKSDSTNHSQPHLIQLR
        + FIVLLVLRHTL I+ISG GEYSLTLLMLLILRIVGILLPIYVM R FTS+ RR HYQDP  HLATS D+SDS +HSQP  I +R
Subjt:  LQFIVLLVLRHTLLILISGVGEYSLTLLMLLILRIVGILLPIYVMFRAFTSV-RRCHYQDPRLHLATSYDKSDSTNHSQPHLIQLR

A0A6J1J9L9 uncharacterized protein LOC111482515 isoform X1

2.0e-21

78.57

Show/hide

Query:  FIVLLVLRHTLLILISGVGEYSLTLLMLLILRIVGILLPIYVMFRAFTSV-RRCHYQDPRLHLATSYDKSDSTNHSQPHLIQLR
        FIVLLVLRHTL I+ISG GEYSLTLLMLLILRIVGILLPIYVM RAFTS+ RR HYQDPRL LAT  D++DSTNH+Q   I +R
Subjt:  FIVLLVLRHTLLILISGVGEYSLTLLMLLILRIVGILLPIYVMFRAFTSV-RRCHYQDPRLHLATSYDKSDSTNHSQPHLIQLR

A0A6J1J9N6 uncharacterized protein LOC111482515 isoform X2

2.0e-21

78.57

Show/hide

Query:  FIVLLVLRHTLLILISGVGEYSLTLLMLLILRIVGILLPIYVMFRAFTSV-RRCHYQDPRLHLATSYDKSDSTNHSQPHLIQLR
        FIVLLVLRHTL I+ISG GEYSLTLLMLLILRIVGILLPIYVM RAFTS+ RR HYQDPRL LAT  D++DSTNH+Q   I +R
Subjt:  FIVLLVLRHTLLILISGVGEYSLTLLMLLILRIVGILLPIYVMFRAFTSV-RRCHYQDPRLHLATSYDKSDSTNHSQPHLIQLR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G01275.1 RING/FYVE/PHD zinc finger superfamily protein

8.4e-04

41.03

Show/hide

Query:  MLQFIVLLVLRHTLLILISGVGEYSLTLLMLLILRIVGILLPIYVMFRAFTSVRRCHYQDPRLHLATSYDKSDSTNHS
        +L F+ LL+LRHTL ++++G   +   L  LL LRI+GI+LPIYV+ +A   V  C      L  + S D SD    S
Subjt:  MLQFIVLLVLRHTLLILISGVGEYSLTLLMLLILRIVGILLPIYVMFRAFTSVRRCHYQDPRLHLATSYDKSDSTNHS

AT2G01275.2 RING/FYVE/PHD zinc finger superfamily protein

8.4e-04

41.03

Show/hide

Query:  MLQFIVLLVLRHTLLILISGVGEYSLTLLMLLILRIVGILLPIYVMFRAFTSVRRCHYQDPRLHLATSYDKSDSTNHS
        +L F+ LL+LRHTL ++++G   +   L  LL LRI+GI+LPIYV+ +A   V  C      L  + S D SD    S
Subjt:  MLQFIVLLVLRHTLLILISGVGEYSLTLLMLLILRIVGILLPIYVMFRAFTSVRRCHYQDPRLHLATSYDKSDSTNHS

AT5G38070.1 RING/FYVE/PHD zinc finger superfamily protein

8.1e-07

49.21

Show/hide

Query:  LQFIVLLVLRHTLLILISGVGEYSLTLLMLLILRIVGILLPIYVMFRAFTSVRRCHYQ-DPRL
        L F++LL LRH+L +L+ GV ++S+TLLML ++R +GILL  YV F++F  ++RC  + D RL
Subjt:  LQFIVLLVLRHTLLILISGVGEYSLTLLMLLILRIVGILLPIYVMFRAFTSVRRCHYQ-DPRL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTGCAGTTTATCGTTCTCCTCGTTTTACGCCATACTCTACTGATTCTAATTAGTGGAGTTGGAGAGTATTCATTGACATTGCTAATGTTGCTGATCTTGAGAATTGT
TGGGATTCTTCTGCCTATATATGTCATGTTTAGGGCATTTACTTCTGTTCGACGGTGTCACTATCAGGATCCTCGTCTTCATCTTGCAACATCATATGATAAAAGTGACT
CGACGAATCATTCTCAACCACATCTCATCCAGTTGAGATAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MLQFIVLLVLRHTLLILISGVGEYSLTLLMLLILRIVGILLPIYVMFRAFTSVRRCHYQDPRLHLATSYDKSDSTNHSQPHLIQLR

Spg030762 (gene) of Sponge gourd (cylindrica) v1 genome