; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg030771 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030771
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold11:25537459..25540371
RNA-Seq ExpressionSpg030771
SyntenySpg030771
Gene Ontology termsNA
InterPro domainsIPR009027 - Ribosomal protein L9/RNase H1, N-terminal
IPR011320 - Ribonuclease H1, N-terminal
IPR024752 - Myb/SANT-like domain
IPR037056 - Ribonuclease H1, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050106.1 retrotransposon protein [Cucumis melo var. makuwa]2.4e-6747.31Show/hide
Query:  SASASKKEKHIWTPDEDEVLVQCLLHLVQVGGWRADNGTFQPGYQNQIGRMMKERLPGCNIVVSPNIESRVKLLKKQYMAIAEIMGQTCSGFGWNDERKC
        +++ SK  KH WT   DEVLV+CLL LV+ GGWRADNGTF+ GY  Q+ ++MKE++ G NI V+PN++SRVK+LKKQY+AIAE+MG  CSGFGWN+ERKC
Subjt:  SASASKKEKHIWTPDEDEVLVQCLLHLVQVGGWRADNGTFQPGYQNQIGRMMKERLPGCNIVVSPNIESRVKLLKKQYMAIAEIMGQTCSGFGWNDERKC

Query:  IEAEKEIFDLWVEDSARGVRARTPIEITPEPEPVANLDENMSVDFEDCYVPSPPVIDPTLGEEFCGTPTGRTAGAGPSRAVHKRRLSIGNVAEVLENGFQ
        IEAEK +FD WV+ +AR +                  +++M ++ ED  +P+P  ++P  GE+   TPT     AG SR   KRR   G++ +      +
Subjt:  IEAEKEIFDLWVEDSARGVRARTPIEITPEPEPVANLDENMSVDFEDCYVPSPPVIDPTLGEEFCGTPTGRTAGAGPSRAVHKRRLSIGNVAEVLENGFQ

Query:  MTAQQIEKIAIWPTKRDELERSRRKELYAELQSIPGVSMEDGLVVARALLSNERMLTHFMDFPPEWKFDYCMEILGRAP
         T+++I KIA W  ++ E+E S  K LY +LQ+IPG+ ++D L+VA +LL +  ML  F+D+P EWK+  CM ILGR P
Subjt:  MTAQQIEKIAIWPTKRDELERSRRKELYAELQSIPGVSMEDGLVVARALLSNERMLTHFMDFPPEWKFDYCMEILGRAP

KAA0065306.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-4640Show/hide
Query:  SKKEKHIWTPDEDEVLVQCLLHLVQVGGWRADNGTFQPGYQNQIGRMMKERLPGCNIVVSPNIESRVKLLKKQYMAIAEIMGQTCSGFGWNDERKCIEAE
        SK  KH WT  EDEVLV+CLL LV+ GGWRADNGTF+  Y                               KQY AIAE+MG  CS FGWN+ERK     
Subjt:  SKKEKHIWTPDEDEVLVQCLLHLVQVGGWRADNGTFQPGYQNQIGRMMKERLPGCNIVVSPNIESRVKLLKKQYMAIAEIMGQTCSGFGWNDERKCIEAE

Query:  KEIFDLWVEDSARGVRARTPIEITPEPEPVANLDENMSVDFEDCYVPSPPVIDPTLGEEFCGTPTGRTAGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQ
                   A G R +TP+EI  +       +++M ++ ED  +P+P  ++P  GE+   TPT     AG  R   KRR   G++ +      + T++
Subjt:  KEIFDLWVEDSARGVRARTPIEITPEPEPVANLDENMSVDFEDCYVPSPPVIDPTLGEEFCGTPTGRTAGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQ

Query:  QIEKIAIWPTKRDELERSRRKELYAELQSIPGVSMEDGLVVARALLSNERMLTHFMDFPPEWKFDYCMEILGRAP
        +I KIA W  ++ E+E S  K LY ELQ+IPG+ ++D L+VA +LL +  ML  F+D+P EWK+  CM ILGR P
Subjt:  QIEKIAIWPTKRDELERSRRKELYAELQSIPGVSMEDGLVVARALLSNERMLTHFMDFPPEWKFDYCMEILGRAP

TYJ96933.1 retrotransposon protein [Cucumis melo var. makuwa]1.2e-4240.93Show/hide
Query:  SASASKKEKHIWTPDEDEVLVQCLLHLVQVGGWRADNGTFQPGYQNQIGRMMKERLPGCNIVVSPNIESRVKLLKKQYMAIAEIMGQTCSGFGWNDERKC
        +++ SK  KH WT  +D+ LV+CLL LV+ GGWRA+N TF+P Y  Q+ ++MKE++P  NI V+ N+ESRVK LKKQY AIA++MG  CS FGWN+ERKC
Subjt:  SASASKKEKHIWTPDEDEVLVQCLLHLVQVGGWRADNGTFQPGYQNQIGRMMKERLPGCNIVVSPNIESRVKLLKKQYMAIAEIMGQTCSGFGWNDERKC

Query:  IEAEKEIFDLWVE-------------------------DSARGVRARTPIEITPEPEPVANLDENMSVDFEDCYVPSPPVIDPTLGEEFCGTPTGRTAGA
        IEAEK +FD WV+                         D A G R +  +E+  +       +++M ++ ED  +P+P  ++P  GE+   T    T  A
Subjt:  IEAEKEIFDLWVE-------------------------DSARGVRARTPIEITPEPEPVANLDENMSVDFEDCYVPSPPVIDPTLGEEFCGTPTGRTAGA

Query:  GPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIAIW
        G SR   KRR   G++ +      Q T+++I KIA W
Subjt:  GPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIAIW

TYK07921.1 hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]7.3e-4837.54Show/hide
Query:  TFTFTIAILTMAASASA--------SKKEKHIWTPDEDEVLVQCLLHLVQVGGWRADNGTFQPGYQNQIGRMMKERLPGCNIVVSPNIESRVKLLKKQYM
        T T+ + ++ M   +S         SK  KH WT  EDEVLV+CLL LV+ GGWRADNGTF+ GY                               KQY 
Subjt:  TFTFTIAILTMAASASA--------SKKEKHIWTPDEDEVLVQCLLHLVQVGGWRADNGTFQPGYQNQIGRMMKERLPGCNIVVSPNIESRVKLLKKQYM

Query:  AIAEIMGQTCSGFGWNDERKCIEAEKEIFDLWVE-------------------------DSARGVRARTPIEITPEPEPVANLDENMSVDFEDCYVPSPP
        AIAE+MG  CSGFGWN+ +KCIE EK +FD WV+                         D A G R +TP+E++ +       +++M ++ ED  +P+P 
Subjt:  AIAEIMGQTCSGFGWNDERKCIEAEKEIFDLWVE-------------------------DSARGVRARTPIEITPEPEPVANLDENMSVDFEDCYVPSPP

Query:  VIDPTLGEEFCGTPTGRTAGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIAIWPTKRDELERSRRKELYAELQSIPGVSMEDGLVVARALLSNER
         ++P  GE+   TPT  T  AG SR   KRR   G++ +      + T+++I KIA W  ++ E+E S  K LYAELQ+IPG+ ++D L+VA +LL +  
Subjt:  VIDPTLGEEFCGTPTGRTAGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIAIWPTKRDELERSRRKELYAELQSIPGVSMEDGLVVARALLSNER

Query:  MLTHFMDFP
        ML  F+D+P
Subjt:  MLTHFMDFP

XP_008455678.1 PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]5.4e-4339.62Show/hide
Query:  EVDSHSSLMETFTFTIAILTMAASASASKKEKHIWTPDEDEVLVQCLLHLVQVGGWRADNGTFQPGYQNQIGRMMKERLPGCNIVVSPNIESRVKLLKKQ
        E DS    +E   F   + T   +++ SK  KH WT  +D+ LV+CLL LV+ GGWRA+N TF+P Y  Q+ ++MKE++P  NI V+ N+ESRVK LKKQ
Subjt:  EVDSHSSLMETFTFTIAILTMAASASASKKEKHIWTPDEDEVLVQCLLHLVQVGGWRADNGTFQPGYQNQIGRMMKERLPGCNIVVSPNIESRVKLLKKQ

Query:  YMAIAEIMGQTCSGFGWNDERKCIEAEKEIFDLWVE-------------------------DSARGVRARTPIEITPEPEPVANLDENMSVDFEDCYVPS
        Y AIA++MG  CS FGWN+ERKCIEAEK +FD WV+                         D A G R +  +E+  +       +++M ++ ED  +P+
Subjt:  YMAIAEIMGQTCSGFGWNDERKCIEAEKEIFDLWVE-------------------------DSARGVRARTPIEITPEPEPVANLDENMSVDFEDCYVPS

Query:  PPVIDPTLGEEFCGTPTGRTAGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIAIW
        P  ++P  GE+   T    T  AG SR   KRR   G++ +      Q T+++I KIA W
Subjt:  PPVIDPTLGEEFCGTPTGRTAGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIAIW

TrEMBL top hitse value%identityAlignment
A0A1S3C252 uncharacterized protein At2g29880-like2.6e-4339.62Show/hide
Query:  EVDSHSSLMETFTFTIAILTMAASASASKKEKHIWTPDEDEVLVQCLLHLVQVGGWRADNGTFQPGYQNQIGRMMKERLPGCNIVVSPNIESRVKLLKKQ
        E DS    +E   F   + T   +++ SK  KH WT  +D+ LV+CLL LV+ GGWRA+N TF+P Y  Q+ ++MKE++P  NI V+ N+ESRVK LKKQ
Subjt:  EVDSHSSLMETFTFTIAILTMAASASASKKEKHIWTPDEDEVLVQCLLHLVQVGGWRADNGTFQPGYQNQIGRMMKERLPGCNIVVSPNIESRVKLLKKQ

Query:  YMAIAEIMGQTCSGFGWNDERKCIEAEKEIFDLWVE-------------------------DSARGVRARTPIEITPEPEPVANLDENMSVDFEDCYVPS
        Y AIA++MG  CS FGWN+ERKCIEAEK +FD WV+                         D A G R +  +E+  +       +++M ++ ED  +P+
Subjt:  YMAIAEIMGQTCSGFGWNDERKCIEAEKEIFDLWVE-------------------------DSARGVRARTPIEITPEPEPVANLDENMSVDFEDCYVPS

Query:  PPVIDPTLGEEFCGTPTGRTAGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIAIW
        P  ++P  GE+   T    T  AG SR   KRR   G++ +      Q T+++I KIA W
Subjt:  PPVIDPTLGEEFCGTPTGRTAGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIAIW

A0A5A7U7F7 Retrotransposon protein1.2e-6747.31Show/hide
Query:  SASASKKEKHIWTPDEDEVLVQCLLHLVQVGGWRADNGTFQPGYQNQIGRMMKERLPGCNIVVSPNIESRVKLLKKQYMAIAEIMGQTCSGFGWNDERKC
        +++ SK  KH WT   DEVLV+CLL LV+ GGWRADNGTF+ GY  Q+ ++MKE++ G NI V+PN++SRVK+LKKQY+AIAE+MG  CSGFGWN+ERKC
Subjt:  SASASKKEKHIWTPDEDEVLVQCLLHLVQVGGWRADNGTFQPGYQNQIGRMMKERLPGCNIVVSPNIESRVKLLKKQYMAIAEIMGQTCSGFGWNDERKC

Query:  IEAEKEIFDLWVEDSARGVRARTPIEITPEPEPVANLDENMSVDFEDCYVPSPPVIDPTLGEEFCGTPTGRTAGAGPSRAVHKRRLSIGNVAEVLENGFQ
        IEAEK +FD WV+ +AR +                  +++M ++ ED  +P+P  ++P  GE+   TPT     AG SR   KRR   G++ +      +
Subjt:  IEAEKEIFDLWVEDSARGVRARTPIEITPEPEPVANLDENMSVDFEDCYVPSPPVIDPTLGEEFCGTPTGRTAGAGPSRAVHKRRLSIGNVAEVLENGFQ

Query:  MTAQQIEKIAIWPTKRDELERSRRKELYAELQSIPGVSMEDGLVVARALLSNERMLTHFMDFPPEWKFDYCMEILGRAP
         T+++I KIA W  ++ E+E S  K LY +LQ+IPG+ ++D L+VA +LL +  ML  F+D+P EWK+  CM ILGR P
Subjt:  MTAQQIEKIAIWPTKRDELERSRRKELYAELQSIPGVSMEDGLVVARALLSNERMLTHFMDFPPEWKFDYCMEILGRAP

A0A5A7VG45 Retrotransposon protein6.6e-4740Show/hide
Query:  SKKEKHIWTPDEDEVLVQCLLHLVQVGGWRADNGTFQPGYQNQIGRMMKERLPGCNIVVSPNIESRVKLLKKQYMAIAEIMGQTCSGFGWNDERKCIEAE
        SK  KH WT  EDEVLV+CLL LV+ GGWRADNGTF+  Y                               KQY AIAE+MG  CS FGWN+ERK     
Subjt:  SKKEKHIWTPDEDEVLVQCLLHLVQVGGWRADNGTFQPGYQNQIGRMMKERLPGCNIVVSPNIESRVKLLKKQYMAIAEIMGQTCSGFGWNDERKCIEAE

Query:  KEIFDLWVEDSARGVRARTPIEITPEPEPVANLDENMSVDFEDCYVPSPPVIDPTLGEEFCGTPTGRTAGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQ
                   A G R +TP+EI  +       +++M ++ ED  +P+P  ++P  GE+   TPT     AG  R   KRR   G++ +      + T++
Subjt:  KEIFDLWVEDSARGVRARTPIEITPEPEPVANLDENMSVDFEDCYVPSPPVIDPTLGEEFCGTPTGRTAGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQ

Query:  QIEKIAIWPTKRDELERSRRKELYAELQSIPGVSMEDGLVVARALLSNERMLTHFMDFPPEWKFDYCMEILGRAP
        +I KIA W  ++ E+E S  K LY ELQ+IPG+ ++D L+VA +LL +  ML  F+D+P EWK+  CM ILGR P
Subjt:  QIEKIAIWPTKRDELERSRRKELYAELQSIPGVSMEDGLVVARALLSNERMLTHFMDFPPEWKFDYCMEILGRAP

A0A5D3BC95 Retrotransposon protein5.8e-4340.93Show/hide
Query:  SASASKKEKHIWTPDEDEVLVQCLLHLVQVGGWRADNGTFQPGYQNQIGRMMKERLPGCNIVVSPNIESRVKLLKKQYMAIAEIMGQTCSGFGWNDERKC
        +++ SK  KH WT  +D+ LV+CLL LV+ GGWRA+N TF+P Y  Q+ ++MKE++P  NI V+ N+ESRVK LKKQY AIA++MG  CS FGWN+ERKC
Subjt:  SASASKKEKHIWTPDEDEVLVQCLLHLVQVGGWRADNGTFQPGYQNQIGRMMKERLPGCNIVVSPNIESRVKLLKKQYMAIAEIMGQTCSGFGWNDERKC

Query:  IEAEKEIFDLWVE-------------------------DSARGVRARTPIEITPEPEPVANLDENMSVDFEDCYVPSPPVIDPTLGEEFCGTPTGRTAGA
        IEAEK +FD WV+                         D A G R +  +E+  +       +++M ++ ED  +P+P  ++P  GE+   T    T  A
Subjt:  IEAEKEIFDLWVE-------------------------DSARGVRARTPIEITPEPEPVANLDENMSVDFEDCYVPSPPVIDPTLGEEFCGTPTGRTAGA

Query:  GPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIAIW
        G SR   KRR   G++ +      Q T+++I KIA W
Subjt:  GPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIAIW

A0A5D3C7T4 Uncharacterized protein3.5e-4837.54Show/hide
Query:  TFTFTIAILTMAASASA--------SKKEKHIWTPDEDEVLVQCLLHLVQVGGWRADNGTFQPGYQNQIGRMMKERLPGCNIVVSPNIESRVKLLKKQYM
        T T+ + ++ M   +S         SK  KH WT  EDEVLV+CLL LV+ GGWRADNGTF+ GY                               KQY 
Subjt:  TFTFTIAILTMAASASA--------SKKEKHIWTPDEDEVLVQCLLHLVQVGGWRADNGTFQPGYQNQIGRMMKERLPGCNIVVSPNIESRVKLLKKQYM

Query:  AIAEIMGQTCSGFGWNDERKCIEAEKEIFDLWVE-------------------------DSARGVRARTPIEITPEPEPVANLDENMSVDFEDCYVPSPP
        AIAE+MG  CSGFGWN+ +KCIE EK +FD WV+                         D A G R +TP+E++ +       +++M ++ ED  +P+P 
Subjt:  AIAEIMGQTCSGFGWNDERKCIEAEKEIFDLWVE-------------------------DSARGVRARTPIEITPEPEPVANLDENMSVDFEDCYVPSPP

Query:  VIDPTLGEEFCGTPTGRTAGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIAIWPTKRDELERSRRKELYAELQSIPGVSMEDGLVVARALLSNER
         ++P  GE+   TPT  T  AG SR   KRR   G++ +      + T+++I KIA W  ++ E+E S  K LYAELQ+IPG+ ++D L+VA +LL +  
Subjt:  VIDPTLGEEFCGTPTGRTAGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIAIWPTKRDELERSRRKELYAELQSIPGVSMEDGLVVARALLSNER

Query:  MLTHFMDFP
        ML  F+D+P
Subjt:  MLTHFMDFP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCAGTGTGTACACGACGTGGTACGAATGTGCCCACCATGTACATGGTTTTAGTGGTGTCGTTTACCAGTCGTATGAGACGTGGGATGACGCAGAAGCAGCTTATAT
CGCTTACACCATGGAAGTGGACAGTCATTCCAGTCTCATGGAGACCTTCACCTTCACAATAGCTATCCTAACCATGGCCGCGTCTGCCTCAGCTTCGAAGAAAGAGAAAC
ACATTTGGACGCCGGATGAAGATGAAGTGCTTGTGCAGTGCCTACTGCACCTAGTCCAAGTGGGGGGATGGCGTGCAGACAATGGGACGTTTCAGCCTGGTTACCAGAAT
CAGATTGGAAGGATGATGAAAGAAAGATTACCAGGATGCAACATAGTCGTCAGCCCGAACATTGAATCCAGAGTGAAGCTGCTAAAAAAACAGTACATGGCGATAGCCGA
GATTATGGGACAGACCTGCAGTGGATTTGGTTGGAATGATGAGAGAAAGTGCATAGAGGCGGAGAAGGAGATATTCGATTTGTGGGTCGAGGACAGCGCTAGAGGAGTGA
GAGCCCGAACCCCAATTGAGATAACACCTGAACCAGAGCCGGTAGCCAATCTGGATGAAAACATGAGCGTGGATTTTGAGGATTGCTACGTCCCAAGTCCCCCAGTTATT
GATCCCACCCTTGGAGAAGAATTCTGTGGGACACCGACTGGTAGGACGGCTGGTGCAGGACCTTCTAGGGCAGTACATAAGAGACGGCTATCCATTGGGAACGTGGCGGA
GGTACTGGAGAATGGATTCCAGATGACCGCACAACAGATCGAGAAGATTGCGATCTGGCCGACCAAGAGGGACGAGCTCGAGAGGAGTCGGCGAAAGGAGTTATATGCGG
AGCTACAATCCATTCCTGGGGTGTCTATGGAGGACGGCTTGGTGGTCGCACGGGCACTACTATCAAATGAGAGGATGTTGACTCACTTTATGGACTTCCCTCCAGAATGG
AAGTTCGACTACTGTATGGAGATCCTCGGTAGGGCACCGAGACAGCCCCCGCAGCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCAGTGTGTACACGACGTGGTACGAATGTGCCCACCATGTACATGGTTTTAGTGGTGTCGTTTACCAGTCGTATGAGACGTGGGATGACGCAGAAGCAGCTTATAT
CGCTTACACCATGGAAGTGGACAGTCATTCCAGTCTCATGGAGACCTTCACCTTCACAATAGCTATCCTAACCATGGCCGCGTCTGCCTCAGCTTCGAAGAAAGAGAAAC
ACATTTGGACGCCGGATGAAGATGAAGTGCTTGTGCAGTGCCTACTGCACCTAGTCCAAGTGGGGGGATGGCGTGCAGACAATGGGACGTTTCAGCCTGGTTACCAGAAT
CAGATTGGAAGGATGATGAAAGAAAGATTACCAGGATGCAACATAGTCGTCAGCCCGAACATTGAATCCAGAGTGAAGCTGCTAAAAAAACAGTACATGGCGATAGCCGA
GATTATGGGACAGACCTGCAGTGGATTTGGTTGGAATGATGAGAGAAAGTGCATAGAGGCGGAGAAGGAGATATTCGATTTGTGGGTCGAGGACAGCGCTAGAGGAGTGA
GAGCCCGAACCCCAATTGAGATAACACCTGAACCAGAGCCGGTAGCCAATCTGGATGAAAACATGAGCGTGGATTTTGAGGATTGCTACGTCCCAAGTCCCCCAGTTATT
GATCCCACCCTTGGAGAAGAATTCTGTGGGACACCGACTGGTAGGACGGCTGGTGCAGGACCTTCTAGGGCAGTACATAAGAGACGGCTATCCATTGGGAACGTGGCGGA
GGTACTGGAGAATGGATTCCAGATGACCGCACAACAGATCGAGAAGATTGCGATCTGGCCGACCAAGAGGGACGAGCTCGAGAGGAGTCGGCGAAAGGAGTTATATGCGG
AGCTACAATCCATTCCTGGGGTGTCTATGGAGGACGGCTTGGTGGTCGCACGGGCACTACTATCAAATGAGAGGATGTTGACTCACTTTATGGACTTCCCTCCAGAATGG
AAGTTCGACTACTGTATGGAGATCCTCGGTAGGGCACCGAGACAGCCCCCGCAGCCATGA
Protein sequenceShow/hide protein sequence
MPSVYTTWYECAHHVHGFSGVVYQSYETWDDAEAAYIAYTMEVDSHSSLMETFTFTIAILTMAASASASKKEKHIWTPDEDEVLVQCLLHLVQVGGWRADNGTFQPGYQN
QIGRMMKERLPGCNIVVSPNIESRVKLLKKQYMAIAEIMGQTCSGFGWNDERKCIEAEKEIFDLWVEDSARGVRARTPIEITPEPEPVANLDENMSVDFEDCYVPSPPVI
DPTLGEEFCGTPTGRTAGAGPSRAVHKRRLSIGNVAEVLENGFQMTAQQIEKIAIWPTKRDELERSRRKELYAELQSIPGVSMEDGLVVARALLSNERMLTHFMDFPPEW
KFDYCMEILGRAPRQPPQP