; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg030775 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030775
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA-directed RNA polymerase subunit
Genome locationscaffold11:25836050..25838985
RNA-Seq ExpressionSpg030775
SyntenySpg030775
Gene Ontology termsGO:0006386 - termination of RNA polymerase III transcription (biological process)
GO:0042779 - tRNA 3'-trailer cleavage (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001222 - Zinc finger, TFIIS-type
IPR034014 - Pol III subunit C11, C-terminal zinc ribbon


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597716.1 DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. sororia]1.4e-1490.7Show/hide
Query:  ATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED
        ATCPNC FGKAAFIQIQLRSADEPA+TFYKCMNE+CR NWRED
Subjt:  ATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED
XP_004141147.1 DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus]9.4e-1695.35Show/hide
Query:  ATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED
        ATCPNC+FGKAAFIQIQLRSADEPATTFYKCMNENCR NWRED
Subjt:  ATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED
XP_022152387.1 DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia]1.9e-1695.35Show/hide
Query:  ATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED
        ATCPNC+FGKAAFIQ+QLRSADEPATTFYKCMNENCRHNWRED
Subjt:  ATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED
XP_022152562.1 DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia]1.0e-1490.7Show/hide
Query:  ATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED
        ATCPNC+FGKAAFIQ+QLRSADEPATTFYKCMNE+CR NWRED
Subjt:  ATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED
XP_038903069.1 DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida]1.1e-1697.67Show/hide
Query:  ATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED
        ATCPNC+FGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED
Subjt:  ATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED
TrEMBL top hitse value%identityAlignment
A0A0A0LCM4 DNA-directed RNA polymerase subunit4.5e-1695.35Show/hide
Query:  ATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED
        ATCPNC+FGKAAFIQIQLRSADEPATTFYKCMNENCR NWRED
Subjt:  ATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED
A0A1S3CQ50 DNA-directed RNA polymerase subunit4.5e-1695.35Show/hide
Query:  ATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED
        ATCPNC+FGKAAFIQIQLRSADEPATTFYKCMNENCR NWRED
Subjt:  ATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED
A0A6J1DDT5 DNA-directed RNA polymerase subunit9.2e-1795.35Show/hide
Query:  ATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED
        ATCPNC+FGKAAFIQ+QLRSADEPATTFYKCMNENCRHNWRED
Subjt:  ATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED
A0A6J1DGL3 DNA-directed RNA polymerase subunit5.0e-1590.7Show/hide
Query:  ATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED
        ATCPNC+FGKAAFIQ+QLRSADEPATTFYKCMNE+CR NWRED
Subjt:  ATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED
A0A6J1IB59 DNA-directed RNA polymerase subunit6.6e-1590.7Show/hide
Query:  ATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED
        ATCPNC FGKAAFIQIQLRSADEPA+TFYKCMNE+CR NWRED
Subjt:  ATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED
SwissProt top hitse value%identityAlignment
O13896 DNA-directed RNA polymerase III subunit RPC101.3e-0450Show/hide
Query:  TCPN--CSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED
        TC N  C   +A F Q+Q+RSADEP +TFY+C    C+  WRE+
Subjt:  TCPN--CSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED
Q04307 DNA-directed RNA polymerase III subunit RPC101.8e-0656.82Show/hide
Query:  CPN---CSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED
        CPN   C    A F Q+Q+RSADEP TTFYKC+  NC H W+E+
Subjt:  CPN---CSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED
Q2M2S7 DNA-directed RNA polymerase III subunit RPC107.5e-0857.5Show/hide
Query:  CPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRE
        CP C   +A F+Q+Q R ADEP TTFYKC N  C H WR+
Subjt:  CPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRE
Q9CQZ7 DNA-directed RNA polymerase III subunit RPC101.5e-0860Show/hide
Query:  CPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRE
        CP C   +A F+Q+Q RSADEP TTFYKC N  C H WR+
Subjt:  CPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRE
Q9Y2Y1 DNA-directed RNA polymerase III subunit RPC101.2e-0858.54Show/hide
Query:  TCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRE
        +CP C   +A F+Q+Q RSADEP TTFYKC N  C H WR+
Subjt:  TCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRE
Arabidopsis top hitse value%identityAlignment
AT1G01210.1 DNA-directed RNA polymerase, subunit M, archaeal3.2e-0648.84Show/hide
Query:  ATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED
        A CP C   KA F  +Q+RSADEP + FY+C+   C   WRE+
Subjt:  ATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED
AT4G07950.1 DNA-directed RNA polymerase, subunit M, archaeal3.2e-0648.84Show/hide
Query:  ATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED
        A CP C   KA F  +Q+RSADEP + FY+C+   C   WRE+
Subjt:  ATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTATCAGTTATCCTCATCACAGAGATTGGTGCAGGAGCATATTGTAGCCTTCAAGGCTTATGCGTTTCAACTTGTGGCAAATGGGAATCCCGACACGTTGAGGTT
TATAGTCTGTGAATACACGTTTAATAAGTTTTGGGAAGGGGTGGAGGAGGGTGGCGGAGCCCACCTTGTTAAGTGGGAAGTGGTTTCTAAGCTGACAGATGTTGGGGATT
GGGGGATAAAACTTACTTTTGGGAGGATTCGATCCTTGTGTTCCCTTTTTCCTCATCTTTATAATCAGTTTGAGAAGAGGCTACATTCAATTGCCTTTCTCTTACCCTCT
CGCAACCCTGCCTCTCTCTCCTTGGGCATCAGTCATCCTCTCACCAACCGCAAGGTGACGGATCTTGTCAGCCTCCTCTCGATCTTTCAAATCAGGTCACTCACCTTCGG
AGACGAGACTCACATGTCAAGATCCCTAGACCCTTCGAAGGAAAGTTTTTATGGCAAGCTTGCTTCTTTGCTAATATGTGGAATATTTGGCTTGCAAGGAATGATTGTAC
TTTTGGGGACTGAGAGATCGAGAGAGGATCTTTTGGAGTTGATTAGACTTAGCACTTCTTTATGGACTTCACAGCCTGCAAGGTTGGAGATGGTTTTGATTTTCTTCGCA
ACATGTCCAAATTGTTCGTTTGGCAAGGCTGCTTTTATACAAATACAACTGAGATCAGCTGATGAACCTGCTACAACATTTTACAAGTGCATGAATGAAAACTGCAGACA
TAATTGGCGTGAGGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTATCAGTTATCCTCATCACAGAGATTGGTGCAGGAGCATATTGTAGCCTTCAAGGCTTATGCGTTTCAACTTGTGGCAAATGGGAATCCCGACACGTTGAGGTT
TATAGTCTGTGAATACACGTTTAATAAGTTTTGGGAAGGGGTGGAGGAGGGTGGCGGAGCCCACCTTGTTAAGTGGGAAGTGGTTTCTAAGCTGACAGATGTTGGGGATT
GGGGGATAAAACTTACTTTTGGGAGGATTCGATCCTTGTGTTCCCTTTTTCCTCATCTTTATAATCAGTTTGAGAAGAGGCTACATTCAATTGCCTTTCTCTTACCCTCT
CGCAACCCTGCCTCTCTCTCCTTGGGCATCAGTCATCCTCTCACCAACCGCAAGGTGACGGATCTTGTCAGCCTCCTCTCGATCTTTCAAATCAGGTCACTCACCTTCGG
AGACGAGACTCACATGTCAAGATCCCTAGACCCTTCGAAGGAAAGTTTTTATGGCAAGCTTGCTTCTTTGCTAATATGTGGAATATTTGGCTTGCAAGGAATGATTGTAC
TTTTGGGGACTGAGAGATCGAGAGAGGATCTTTTGGAGTTGATTAGACTTAGCACTTCTTTATGGACTTCACAGCCTGCAAGGTTGGAGATGGTTTTGATTTTCTTCGCA
ACATGTCCAAATTGTTCGTTTGGCAAGGCTGCTTTTATACAAATACAACTGAGATCAGCTGATGAACCTGCTACAACATTTTACAAGTGCATGAATGAAAACTGCAGACA
TAATTGGCGTGAGGATTAA
Protein sequenceShow/hide protein sequence
MSYQLSSSQRLVQEHIVAFKAYAFQLVANGNPDTLRFIVCEYTFNKFWEGVEEGGGAHLVKWEVVSKLTDVGDWGIKLTFGRIRSLCSLFPHLYNQFEKRLHSIAFLLPS
RNPASLSLGISHPLTNRKVTDLVSLLSIFQIRSLTFGDETHMSRSLDPSKESFYGKLASLLICGIFGLQGMIVLLGTERSREDLLELIRLSTSLWTSQPARLEMVLIFFA
TCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED