; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg030781 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030781
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionribosomal protein L16
Genome locationscaffold11:28878984..28880637
RNA-Seq ExpressionSpg030781
SyntenySpg030781
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0006811 - ion transport (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000114 - Ribosomal protein L16
IPR016180 - Ribosomal protein L10e/L16
IPR018280 - Ribosomal protein S3, conserved site
IPR020798 - Ribosomal protein L16, conserved site
IPR036419 - Ribosomal protein S3, C-terminal domain superfamily
IPR036920 - Ribosomal protein L10e/L16 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEF27073.1 60S ribosomal protein L16, putative [Ricinus communis]1.7e-6092.97Show/hide
Query:  GRSEGAEIARTECRKYGKTSRNVFNQKIDYASAEVSTHYGISGGCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGK
        GR EGAEIARTEC KYGKTSRNVFNQKIDYA AEVST YGISG CSRGCKLD TQLGFGRYGTKSC+AGRLSYRAIEAARRAIIGQFHRAM GQFRRNGK
Subjt:  GRSEGAEIARTECRKYGKTSRNVFNQKIDYASAEVSTHYGISGGCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGK

Query:  IWVRVLAELPITGKPTEVRMGRGKGNPT
        IWVRVLA+LPITGKPTEVRMGRGKGNPT
Subjt:  IWVRVLAELPITGKPTEVRMGRGKGNPT

GFS28408.1 hypothetical protein Acr_00g0001640 [Actinidia rufa]2.8e-6092.97Show/hide
Query:  GRSEGAEIARTECRKYGKTSRNVFNQKIDYASAEVSTHYGISGGCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGK
        GRSEGAEIARTEC KYGKTSRNVFNQKIDYA AEVST YGISG CSRGCK D TQLGFGRYGT+SCRAGRLSYRAIEAARRAIIGQFHRAM GQFRRNGK
Subjt:  GRSEGAEIARTECRKYGKTSRNVFNQKIDYASAEVSTHYGISGGCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGK

Query:  IWVRVLAELPITGKPTEVRMGRGKGNPT
        IWVRVLA+LPITGKPTEVRMGRGKGNPT
Subjt:  IWVRVLAELPITGKPTEVRMGRGKGNPT

KAA0040387.1 ribosomal protein S3 [Cucumis melo var. makuwa]3.1e-5991.41Show/hide
Query:  GRSEGAEIARTECRKYGKTSRNVFNQKIDYASAEVSTHYGISGGCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGK
        GRSEGAEIARTEC KYGKTSRNVF+QKIDYA AEVST YGISG CSRGCK D TQLGFGRYGT+SCRAGRLSYRAIEAARRAIIGQFHRAM GQFRRNG+
Subjt:  GRSEGAEIARTECRKYGKTSRNVFNQKIDYASAEVSTHYGISGGCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGK

Query:  IWVRVLAELPITGKPTEVRMGRGKGNPT
        IWVRVLA+LPITGKPTEVRMGRGKGNPT
Subjt:  IWVRVLAELPITGKPTEVRMGRGKGNPT

TYK08752.1 ribosomal protein S3 [Cucumis melo var. makuwa]3.1e-5991.41Show/hide
Query:  GRSEGAEIARTECRKYGKTSRNVFNQKIDYASAEVSTHYGISGGCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGK
        GRSEGAEIARTEC KYGKTSRNVF+QKIDYA AEVST YGISG CSRGCK D TQLGFGRYGT+SCRAGRLSYRAIEAARRAIIGQFHRAM GQFRRNG+
Subjt:  GRSEGAEIARTECRKYGKTSRNVFNQKIDYASAEVSTHYGISGGCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGK

Query:  IWVRVLAELPITGKPTEVRMGRGKGNPT
        IWVRVLA+LPITGKPTEVRMGRGKGNPT
Subjt:  IWVRVLAELPITGKPTEVRMGRGKGNPT

XP_030965048.1 uncharacterized protein LOC115986320 [Quercus lobata]1.8e-5992.19Show/hide
Query:  GRSEGAEIARTECRKYGKTSRNVFNQKIDYASAEVSTHYGISGGCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGK
        GRSEGAEIARTEC KYGKTSRNVFNQKIDYA AEVST YGI G C RGCK D TQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAM GQFRRNGK
Subjt:  GRSEGAEIARTECRKYGKTSRNVFNQKIDYASAEVSTHYGISGGCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGK

Query:  IWVRVLAELPITGKPTEVRMGRGKGNPT
        IWVRVLA+LPITGKPTEVRMGRGKGNPT
Subjt:  IWVRVLAELPITGKPTEVRMGRGKGNPT

TrEMBL top hitse value%identityAlignment
A0A5A7TFQ7 Ribosomal protein S3 (Mitochondrion)1.5e-5991.41Show/hide
Query:  GRSEGAEIARTECRKYGKTSRNVFNQKIDYASAEVSTHYGISGGCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGK
        GRSEGAEIARTEC KYGKTSRNVF+QKIDYA AEVST YGISG CSRGCK D TQLGFGRYGT+SCRAGRLSYRAIEAARRAIIGQFHRAM GQFRRNG+
Subjt:  GRSEGAEIARTECRKYGKTSRNVFNQKIDYASAEVSTHYGISGGCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGK

Query:  IWVRVLAELPITGKPTEVRMGRGKGNPT
        IWVRVLA+LPITGKPTEVRMGRGKGNPT
Subjt:  IWVRVLAELPITGKPTEVRMGRGKGNPT

A0A5D3CBR7 Ribosomal protein S3 (Mitochondrion)1.5e-5991.41Show/hide
Query:  GRSEGAEIARTECRKYGKTSRNVFNQKIDYASAEVSTHYGISGGCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGK
        GRSEGAEIARTEC KYGKTSRNVF+QKIDYA AEVST YGISG CSRGCK D TQLGFGRYGT+SCRAGRLSYRAIEAARRAIIGQFHRAM GQFRRNG+
Subjt:  GRSEGAEIARTECRKYGKTSRNVFNQKIDYASAEVSTHYGISGGCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGK

Query:  IWVRVLAELPITGKPTEVRMGRGKGNPT
        IWVRVLA+LPITGKPTEVRMGRGKGNPT
Subjt:  IWVRVLAELPITGKPTEVRMGRGKGNPT

A0A5N6L0R0 Uncharacterized protein1.5e-5991.41Show/hide
Query:  GRSEGAEIARTECRKYGKTSRNVFNQKIDYASAEVSTHYGISGGCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGK
        GRSEGAEIARTEC KYGKTSRN+FNQKIDYA AEVST YGI G CSRGCK D TQLGFGRYG KSCRAGRLSYRAIEAARRAIIGQFHRAM GQFRRNGK
Subjt:  GRSEGAEIARTECRKYGKTSRNVFNQKIDYASAEVSTHYGISGGCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGK

Query:  IWVRVLAELPITGKPTEVRMGRGKGNPT
        IWVRVLA+LPITGKPTEVRMGRGKGNPT
Subjt:  IWVRVLAELPITGKPTEVRMGRGKGNPT

A0A7J0D6P3 Uncharacterized protein1.4e-6092.97Show/hide
Query:  GRSEGAEIARTECRKYGKTSRNVFNQKIDYASAEVSTHYGISGGCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGK
        GRSEGAEIARTEC KYGKTSRNVFNQKIDYA AEVST YGISG CSRGCK D TQLGFGRYGT+SCRAGRLSYRAIEAARRAIIGQFHRAM GQFRRNGK
Subjt:  GRSEGAEIARTECRKYGKTSRNVFNQKIDYASAEVSTHYGISGGCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGK

Query:  IWVRVLAELPITGKPTEVRMGRGKGNPT
        IWVRVLA+LPITGKPTEVRMGRGKGNPT
Subjt:  IWVRVLAELPITGKPTEVRMGRGKGNPT

B9TAP3 60S ribosomal protein L16, putative8.0e-6192.97Show/hide
Query:  GRSEGAEIARTECRKYGKTSRNVFNQKIDYASAEVSTHYGISGGCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGK
        GR EGAEIARTEC KYGKTSRNVFNQKIDYA AEVST YGISG CSRGCKLD TQLGFGRYGTKSC+AGRLSYRAIEAARRAIIGQFHRAM GQFRRNGK
Subjt:  GRSEGAEIARTECRKYGKTSRNVFNQKIDYASAEVSTHYGISGGCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGK

Query:  IWVRVLAELPITGKPTEVRMGRGKGNPT
        IWVRVLA+LPITGKPTEVRMGRGKGNPT
Subjt:  IWVRVLAELPITGKPTEVRMGRGKGNPT

SwissProt top hitse value%identityAlignment
P27927 60S ribosomal protein L16, mitochondrial2.1e-3486.9Show/hide
Query:  CSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGKIWVRVLAELPITGKPTEVRMGRGKGNPT
        CSRG + D TQLGFGRYGTKS RAGRLSYRAIEAARRA IGQF RAM GQFRRN KIWVRVLA+LPITGKP EVRMGRGKGNPT
Subjt:  CSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGKIWVRVLAELPITGKPTEVRMGRGKGNPT

P46801 60S ribosomal protein L16, mitochondrial7.0e-3890.48Show/hide
Query:  CSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGKIWVRVLAELPITGKPTEVRMGRGKGNPT
        CSRGC+ D TQLGFGRYGTKSCRAGRLSYRAIEAARRA IGQFHRAM GQFRRN KIWVRVLA+LPITGKP EVRMGRGKGNPT
Subjt:  CSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGKIWVRVLAELPITGKPTEVRMGRGKGNPT

P49389 60S ribosomal protein L16, mitochondrial2.5e-3586.21Show/hide
Query:  GGCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIG-QFHRAMRGQFRRNGKIWVRVLAELPITGKPTEVRMGRGKGNPT
        G CSRGCK D T+LGFGRYGTKSCRAGRLSYRAIEAARRA IG  F RAM GQFRRN KIWVRVLA+LPITGKP EVRMGRGKGNPT
Subjt:  GGCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIG-QFHRAMRGQFRRNGKIWVRVLAELPITGKPTEVRMGRGKGNPT

Q04715 60S ribosomal protein L16, mitochondrial4.4e-4091.86Show/hide
Query:  GGCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGKIWVRVLAELPITGKPTEVRMGRGKGNPT
        G CSRGCK D TQLGFGRYGTKSCRAGRLSYRAIEAARRAIIG FHRAM GQFRRNGKIWVRVLA++PITGKPTEVRMGRGKGNPT
Subjt:  GGCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGKIWVRVLAELPITGKPTEVRMGRGKGNPT

Q95747 60S ribosomal protein L16, mitochondrial2.0e-3787.21Show/hide
Query:  GGCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGKIWVRVLAELPITGKPTEVRMGRGKGNPT
        G CSRGCK D T+LGFGRYG KSC+AG LSYRAIEAARRAIIG FHRAM GQFRRNGKIWVRV A+LPITGKPTEVRMGRGKGNPT
Subjt:  GGCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGKIWVRVLAELPITGKPTEVRMGRGKGNPT

Arabidopsis top hitse value%identityAlignment
AT2G28830.1 PLANT U-BOX 121.8e-0435.29Show/hide
Query:  RYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGKIWVRVLAELPITGKPTEVRMGRGKGNP
        RY  ++     ++ R IEA RRA+     R +         + V + A+ P+T +P E RMGRGKG P
Subjt:  RYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGKIWVRVLAELPITGKPTEVRMGRGKGNP

ATCG00790.1 ribosomal protein L166.4e-1039.29Show/hide
Query:  GCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGKIWVRVLAELPITGKPTEVRMGRGKGNP
        G  +G      ++ FGRY  ++     ++ R IEA R        RAM    RR GKIWVR+  + P+T +P E RMG GKG+P
Subjt:  GCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGKIWVRVLAELPITGKPTEVRMGRGKGNP

ATMG00080.1 ribosomal protein L163.5e-4089.53Show/hide
Query:  GGCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGKIWVRVLAELPITGKPTEVRMGRGKGNPT
        G CSRGCK D T+LGFGRYGTKSC+AGRLSYRAIEAARRAIIG FHRAM GQFRRNGKIWVRV A+LPITGKPTEVRMGRGKGNPT
Subjt:  GGCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGKIWVRVLAELPITGKPTEVRMGRGKGNPT

ATMG00090.1 structural constituent of ribosome;protein binding1.4e-0972.5Show/hide
Query:  EGAEIARTECRKYGKTSRNVFNQKIDYASAEVSTHYGISG
        + AE A+T+C K+ KTSRNVFN KIDYA AEVST YGISG
Subjt:  EGAEIARTECRKYGKTSRNVFNQKIDYASAEVSTHYGISG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCGATCAGAAGGGGCAGAAATAGCTAGAACTGAATGCAGAAAGTATGGAAAAACATCTCGTAATGTATTTAACCAGAAAATCGATTATGCTTCTGCGGAAGTATC
TACTCATTATGGAATCTCAGGCGGATGTAGTAGGGGTTGCAAACTGGACGATACACAACTTGGTTTTGGAAGATATGGCACTAAAAGTTGTAGAGCAGGTCGTCTTTCAT
ATCGAGCTATTGAAGCAGCGCGTCGGGCTATAATCGGACAATTCCATCGTGCTATGAGAGGACAATTCCGAAGAAATGGTAAAATATGGGTAAGAGTTCTCGCAGAGCTC
CCTATTACCGGGAAACCTACAGAAGTCAGAATGGGAAGAGGAAAAGGAAATCCTACAGTTGTACGACGAGCCTTTTTGTTCCAGGCGTACGACCCGGATACATTAAGATC
CTTCCCACAGGATCATCATGACTCCTACGTTCCGACTTCCAAAGGCGATCCTAAGGGAAGAAGAATGAAAGGGATAAGGCTGCAAGAAGAACCTAGAGAGGAAGCTCCAC
CGAAAGAAGAAGAGGAAATCAGACTCGAGTTTCTGGAAATCTTTCAAGAGGGAGTTCCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTCGATCAGAAGGGGCAGAAATAGCTAGAACTGAATGCAGAAAGTATGGAAAAACATCTCGTAATGTATTTAACCAGAAAATCGATTATGCTTCTGCGGAAGTATC
TACTCATTATGGAATCTCAGGCGGATGTAGTAGGGGTTGCAAACTGGACGATACACAACTTGGTTTTGGAAGATATGGCACTAAAAGTTGTAGAGCAGGTCGTCTTTCAT
ATCGAGCTATTGAAGCAGCGCGTCGGGCTATAATCGGACAATTCCATCGTGCTATGAGAGGACAATTCCGAAGAAATGGTAAAATATGGGTAAGAGTTCTCGCAGAGCTC
CCTATTACCGGGAAACCTACAGAAGTCAGAATGGGAAGAGGAAAAGGAAATCCTACAGTTGTACGACGAGCCTTTTTGTTCCAGGCGTACGACCCGGATACATTAAGATC
CTTCCCACAGGATCATCATGACTCCTACGTTCCGACTTCCAAAGGCGATCCTAAGGGAAGAAGAATGAAAGGGATAAGGCTGCAAGAAGAACCTAGAGAGGAAGCTCCAC
CGAAAGAAGAAGAGGAAATCAGACTCGAGTTTCTGGAAATCTTTCAAGAGGGAGTTCCATAG
Protein sequenceShow/hide protein sequence
MGRSEGAEIARTECRKYGKTSRNVFNQKIDYASAEVSTHYGISGGCSRGCKLDDTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMRGQFRRNGKIWVRVLAEL
PITGKPTEVRMGRGKGNPTVVRRAFLFQAYDPDTLRSFPQDHHDSYVPTSKGDPKGRRMKGIRLQEEPREEAPPKEEEEIRLEFLEIFQEGVP