; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg030828 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030828
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold11:28737986..28748040
RNA-Seq ExpressionSpg030828
SyntenySpg030828
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR024752 - Myb/SANT-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033487.1 uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa]1.5e-4561.18Show/hide
Query:  IHFESPKHIWTPMEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILKRQYGAIVKMMGPTCSGFWWNDERKCIE
        I+ +  KH WT +EDE LV+CLLQLV+ G W+VDNGTF+ GYL QV KLMKEK+   +IQVT  LE  V ILK+QY  I +MMGP CSGF WN ERKCIE
Subjt:  IHFESPKHIWTPMEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILKRQYGAIVKMMGPTCSGFWWNDERKCIE

Query:  AEKSVFDDWVRVHPHARRMRNKSFPYFDDLAIVFGKDRDNGEGALTPKEVAT
        AEKSV +DWV+ H +AR + NK FPYF DL IVFG+DR  G    TP E+ +
Subjt:  AEKSVFDDWVRVHPHARRMRNKSFPYFDDLAIVFGKDRDNGEGALTPKEVAT

KAA0056560.1 retrotransposon protein [Cucumis melo var. makuwa]3.8e-4453.02Show/hide
Query:  SPKHIWTPMEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILKRQYGAIVKMMGPTCSGFWWNDERKCIEAEKS
        +P+H+WT  E+  LV+CL++L+ +GGWK DNGTFRSGYL Q++++M EKLP C ++ T+ ++ ++  LKR + AI +M GP CSGF WNDE KCI AEK 
Subjt:  SPKHIWTPMEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILKRQYGAIVKMMGPTCSGFWWNDERKCIEAEKS

Query:  VFDDWVRVHPHARRMRNKSFPYFDDLAIVFGKDRDNGEGALTPKEVATD
        +FD+WVR HP A+ + NK FPY+D+L  VFG+DR  G  A T   VA++
Subjt:  VFDDWVRVHPHARRMRNKSFPYFDDLAIVFGKDRDNGEGALTPKEVATD

TYJ96933.1 retrotransposon protein [Cucumis melo var. makuwa]9.9e-4563.04Show/hide
Query:  ESPKHIWTPMEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILKRQYGAIVKMMGPTCSGFWWNDERKCIEAEK
        ++ KH WT ++D+ LV+CLLQLV+ GGW+ +N TF+  YL QV KLMKEK+PR +IQVT  LE +V  LK+QY AI KMMGP CS F WN+ERKCIEAEK
Subjt:  ESPKHIWTPMEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILKRQYGAIVKMMGPTCSGFWWNDERKCIEAEK

Query:  SVFDDWVRVHPHARRMRNKSFPYFDDLAIVFGKDRDNG
        SVFDDWV+ HP+AR + NK F YF DL IVFG+D+  G
Subjt:  SVFDDWVRVHPHARRMRNKSFPYFDDLAIVFGKDRDNG

TYK26842.1 uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]1.5e-4561.18Show/hide
Query:  IHFESPKHIWTPMEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILKRQYGAIVKMMGPTCSGFWWNDERKCIE
        I+ +  KH WT +EDE LV+CLLQLV+ G W+VDNGTF+ GYL QV KLMKEK+   +IQVT  LE  V ILK+QY  I +MMGP CSGF WN ERKCIE
Subjt:  IHFESPKHIWTPMEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILKRQYGAIVKMMGPTCSGFWWNDERKCIE

Query:  AEKSVFDDWVRVHPHARRMRNKSFPYFDDLAIVFGKDRDNGEGALTPKEVAT
        AEKSV +DWV+ H +AR + NK FPYF DL IVFG+DR  G    TP E+ +
Subjt:  AEKSVFDDWVRVHPHARRMRNKSFPYFDDLAIVFGKDRDNGEGALTPKEVAT

XP_008455678.1 PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]9.9e-4563.04Show/hide
Query:  ESPKHIWTPMEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILKRQYGAIVKMMGPTCSGFWWNDERKCIEAEK
        ++ KH WT ++D+ LV+CLLQLV+ GGW+ +N TF+  YL QV KLMKEK+PR +IQVT  LE +V  LK+QY AI KMMGP CS F WN+ERKCIEAEK
Subjt:  ESPKHIWTPMEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILKRQYGAIVKMMGPTCSGFWWNDERKCIEAEK

Query:  SVFDDWVRVHPHARRMRNKSFPYFDDLAIVFGKDRDNG
        SVFDDWV+ HP+AR + NK F YF DL IVFG+D+  G
Subjt:  SVFDDWVRVHPHARRMRNKSFPYFDDLAIVFGKDRDNG

TrEMBL top hitse value%identityAlignment
A0A1S3C252 uncharacterized protein At2g29880-like4.8e-4563.04Show/hide
Query:  ESPKHIWTPMEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILKRQYGAIVKMMGPTCSGFWWNDERKCIEAEK
        ++ KH WT ++D+ LV+CLLQLV+ GGW+ +N TF+  YL QV KLMKEK+PR +IQVT  LE +V  LK+QY AI KMMGP CS F WN+ERKCIEAEK
Subjt:  ESPKHIWTPMEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILKRQYGAIVKMMGPTCSGFWWNDERKCIEAEK

Query:  SVFDDWVRVHPHARRMRNKSFPYFDDLAIVFGKDRDNG
        SVFDDWV+ HP+AR + NK F YF DL IVFG+D+  G
Subjt:  SVFDDWVRVHPHARRMRNKSFPYFDDLAIVFGKDRDNG

A0A5A7SW62 Myb_DNA-bind_3 domain-containing protein7.4e-4661.18Show/hide
Query:  IHFESPKHIWTPMEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILKRQYGAIVKMMGPTCSGFWWNDERKCIE
        I+ +  KH WT +EDE LV+CLLQLV+ G W+VDNGTF+ GYL QV KLMKEK+   +IQVT  LE  V ILK+QY  I +MMGP CSGF WN ERKCIE
Subjt:  IHFESPKHIWTPMEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILKRQYGAIVKMMGPTCSGFWWNDERKCIE

Query:  AEKSVFDDWVRVHPHARRMRNKSFPYFDDLAIVFGKDRDNGEGALTPKEVAT
        AEKSV +DWV+ H +AR + NK FPYF DL IVFG+DR  G    TP E+ +
Subjt:  AEKSVFDDWVRVHPHARRMRNKSFPYFDDLAIVFGKDRDNGEGALTPKEVAT

A0A5A7UNC0 Retrotransposon protein1.8e-4453.02Show/hide
Query:  SPKHIWTPMEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILKRQYGAIVKMMGPTCSGFWWNDERKCIEAEKS
        +P+H+WT  E+  LV+CL++L+ +GGWK DNGTFRSGYL Q++++M EKLP C ++ T+ ++ ++  LKR + AI +M GP CSGF WNDE KCI AEK 
Subjt:  SPKHIWTPMEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILKRQYGAIVKMMGPTCSGFWWNDERKCIEAEKS

Query:  VFDDWVRVHPHARRMRNKSFPYFDDLAIVFGKDRDNGEGALTPKEVATD
        +FD+WVR HP A+ + NK FPY+D+L  VFG+DR  G  A T   VA++
Subjt:  VFDDWVRVHPHARRMRNKSFPYFDDLAIVFGKDRDNGEGALTPKEVATD

A0A5D3BC95 Retrotransposon protein4.8e-4563.04Show/hide
Query:  ESPKHIWTPMEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILKRQYGAIVKMMGPTCSGFWWNDERKCIEAEK
        ++ KH WT ++D+ LV+CLLQLV+ GGW+ +N TF+  YL QV KLMKEK+PR +IQVT  LE +V  LK+QY AI KMMGP CS F WN+ERKCIEAEK
Subjt:  ESPKHIWTPMEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILKRQYGAIVKMMGPTCSGFWWNDERKCIEAEK

Query:  SVFDDWVRVHPHARRMRNKSFPYFDDLAIVFGKDRDNG
        SVFDDWV+ HP+AR + NK F YF DL IVFG+D+  G
Subjt:  SVFDDWVRVHPHARRMRNKSFPYFDDLAIVFGKDRDNG

A0A5D3DTL0 Myb_DNA-bind_3 domain-containing protein7.4e-4661.18Show/hide
Query:  IHFESPKHIWTPMEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILKRQYGAIVKMMGPTCSGFWWNDERKCIE
        I+ +  KH WT +EDE LV+CLLQLV+ G W+VDNGTF+ GYL QV KLMKEK+   +IQVT  LE  V ILK+QY  I +MMGP CSGF WN ERKCIE
Subjt:  IHFESPKHIWTPMEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILKRQYGAIVKMMGPTCSGFWWNDERKCIE

Query:  AEKSVFDDWVRVHPHARRMRNKSFPYFDDLAIVFGKDRDNGEGALTPKEVAT
        AEKSV +DWV+ H +AR + NK FPYF DL IVFG+DR  G    TP E+ +
Subjt:  AEKSVFDDWVRVHPHARRMRNKSFPYFDDLAIVFGKDRDNGEGALTPKEVAT

SwissProt top hitse value%identityAlignment
O82368 Uncharacterized protein At2g298802.5e-0624.11Show/hide
Query:  ESPKHIWTPMEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILKRQYGAIVKMMGPTCSGFWWNDERKCIEAEK
        + P   W+  E   L   L+  ++  GW+  NGT     +++ +  +  K  +C+   T+ L  ++  +K++Y     +     SGF W+   K   A  
Subjt:  ESPKHIWTPMEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILKRQYGAIVKMMGPTCSGFWWNDERKCIEAEK

Query:  SVFDDWVRVHPHARRMRNKSFPYFDDLAIVFGKDRDNGEGA
         V+  ++  HP+   MR  +F  F+DL ++F      G  A
Subjt:  SVFDDWVRVHPHARRMRNKSFPYFDDLAIVFGKDRDNGEGA

Arabidopsis top hitse value%identityAlignment
AT2G24960.1 unknown protein2.5e-0925.91Show/hide
Query:  FFVLDGIVRPSFHTL-------GQANGIIHFESPKHIWTPMEDEVLVQCLLQLVQVG-GWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTI
        + V DG    S H L       G++  +   ES K  WT   D+  V+ ++   Q+G G K  N   +  ++  ++                + +Y   +
Subjt:  FFVLDGIVRPSFHTL-------GQANGIIHFESPKHIWTPMEDEVLVQCLLQLVQVG-GWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTI

Query:  LKRQYGAIVKMMGPTCS-----GFWWNDERKCIEAEKSVFDDWVRVHPHARRMRNKSFPYFDDLAIVF------GKD-RDNGEGALTPKEVAT
        L+ +Y  ++K      +     GF W++ R  I A+ +V+D +++ HP AR  R KS P ++DL  +F      G D RD+G  A T +  A+
Subjt:  LKRQYGAIVKMMGPTCS-----GFWWNDERKCIEAEKSVFDDWVRVHPHARRMRNKSFPYFDDLAIVF------GKD-RDNGEGALTPKEVAT

AT2G24960.2 unknown protein2.5e-0925.91Show/hide
Query:  FFVLDGIVRPSFHTL-------GQANGIIHFESPKHIWTPMEDEVLVQCLLQLVQVG-GWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTI
        + V DG    S H L       G++  +   ES K  WT   D+  V+ ++   Q+G G K  N   +  ++  ++                + +Y   +
Subjt:  FFVLDGIVRPSFHTL-------GQANGIIHFESPKHIWTPMEDEVLVQCLLQLVQVG-GWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTI

Query:  LKRQYGAIVKMMGPTCS-----GFWWNDERKCIEAEKSVFDDWVRVHPHARRMRNKSFPYFDDLAIVF------GKD-RDNGEGALTPKEVAT
        L+ +Y  ++K      +     GF W++ R  I A+ +V+D +++ HP AR  R KS P ++DL  +F      G D RD+G  A T +  A+
Subjt:  LKRQYGAIVKMMGPTCS-----GFWWNDERKCIEAEKSVFDDWVRVHPHARRMRNKSFPYFDDLAIVF------GKD-RDNGEGALTPKEVAT

AT4G02210.1 unknown protein6.4e-1022.44Show/hide
Query:  ESPKHIWTPMEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILKRQYGAIVKMMGPTCS-----GFWWNDERKC
        E  + +WTP  D+  ++ +++ V+ G    D+   +  +          K   C         Y   +LK ++  +  +     +     GF W+D R+ 
Subjt:  ESPKHIWTPMEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILKRQYGAIVKMMGPTCS-----GFWWNDERKC

Query:  IEAEKSVFDDWVRVHPHARRMRNKSFPYFDDLAIVF--GKDRDNGEGALTPKEVAT
        + A+  V+D+++++HP +R  R KS P + DL +V+  G      E +++  E  T
Subjt:  IEAEKSVFDDWVRVHPHARRMRNKSFPYFDDLAIVF--GKDRDNGEGALTPKEVAT

AT4G02210.2 unknown protein6.4e-1022.44Show/hide
Query:  ESPKHIWTPMEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILKRQYGAIVKMMGPTCS-----GFWWNDERKC
        E  + +WTP  D+  ++ +++ V+ G    D+   +  +          K   C         Y   +LK ++  +  +     +     GF W+D R+ 
Subjt:  ESPKHIWTPMEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILKRQYGAIVKMMGPTCS-----GFWWNDERKC

Query:  IEAEKSVFDDWVRVHPHARRMRNKSFPYFDDLAIVF--GKDRDNGEGALTPKEVAT
        + A+  V+D+++++HP +R  R KS P + DL +V+  G      E +++  E  T
Subjt:  IEAEKSVFDDWVRVHPHARRMRNKSFPYFDDLAIVF--GKDRDNGEGALTPKEVAT

AT5G27260.1 unknown protein2.6e-1126.95Show/hide
Query:  WTPMEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEY-----KVTILKRQYGAIVKMMGPTCSGFWWNDERKCIEAEKS
        W+P E ++LVQ L++ +    W+  NGT         L +  + +P  + +   +  Y     ++  LK QY + + +     SGF W+   K   A   
Subjt:  WTPMEDEVLVQCLLQLVQVGGWKVDNGTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEY-----KVTILKRQYGAIVKMMGPTCSGFWWNDERKCIEAEKS

Query:  VFDDWVRVHPHARRMRNKSFPYFDDLAIVFGKDRDNGEGAL
        V+ D+++ HP+ +++R  +F +FD+L I+FG+    G+ A+
Subjt:  VFDDWVRVHPHARRMRNKSFPYFDDLAIVFGKDRDNGEGAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGAAGTAGACTTCTGGCTTCAGAGGCTTCAATCTTCAGAGTCTTGCAGGAAGCTTCAAGCTTTTGAATTTTGCAGAAGCTTCAATCTTCGGAGTCTTGCAGCAGG
ATCTGGACTTCAATCTTCAAGATTCTTGCAGGAGGAACGAGGCTTCAATCTTCAAGTCTTCTTAAGCATCAGAGGTGGTGTGGCAAGCACCAAACCAGGGTGCAGGAATA
TCAGTATGGCTTTTGATTACTCTGGGAGGCAACAAGTTGGCGTCAGGAATGGCTCAGGCACTTCAATGGATGAAATTGATCACGAGCAAGTTATGGACTACCACCGAGGA
CGAATTCTGGTGGGGATTGGAGTGAGGAGGGGGATTGTGAAGCATGTAGTGGACGTGATTCCATCTCTCCCTTGCCGCTCCATAAACTCGACCCTCTCGCTTGCCGCCTC
CAAATTTCCATCAATTTTCTTGTATCGTGGCTTCCTCCCTTCAAAAATAGTGTTCTTTGTTCTTGATGGGATTGTGAGGCCTTCTTTTCATACTCTAGGCCAGGCCAATG
GCATCATCCACTTCGAAAGCCCGAAACATATCTGGACACCAATGGAGGATGAAGTTTTGGTCCAGTGCTTGTTACAGTTAGTTCAAGTAGGTGGTTGGAAGGTTGACAAC
GGGACCTTTAGATCGGGGTATTTGCAACAAGTATTGAAGTTGATGAAAGAGAAATTGCCAAGATGCGACATACAAGTGACCTCGACCTTGGAGTACAAAGTGACGATCCT
AAAAAGGCAATACGGTGCCATTGTCAAAATGATGGGTCCCACCTGCAGTGGTTTTTGGTGGAATGATGAGCGAAAGTGCATTGAGGCGGAGAAATCAGTCTTTGATGATT
GGGTTAGGGTACACCCACATGCCCGACGTATGAGGAACAAGTCATTCCCCTACTTCGACGACCTAGCAATTGTGTTCGGGAAGGATAGGGATAATGGAGAAGGTGCTTTG
ACTCCGAAAGAAGTGGCTACCGATCTGGATAAGGGCTGCATGTGTATCTTGGGAAGGCAACCATGA
mRNA sequenceShow/hide mRNA sequence
ATGATTGAAGTAGACTTCTGGCTTCAGAGGCTTCAATCTTCAGAGTCTTGCAGGAAGCTTCAAGCTTTTGAATTTTGCAGAAGCTTCAATCTTCGGAGTCTTGCAGCAGG
ATCTGGACTTCAATCTTCAAGATTCTTGCAGGAGGAACGAGGCTTCAATCTTCAAGTCTTCTTAAGCATCAGAGGTGGTGTGGCAAGCACCAAACCAGGGTGCAGGAATA
TCAGTATGGCTTTTGATTACTCTGGGAGGCAACAAGTTGGCGTCAGGAATGGCTCAGGCACTTCAATGGATGAAATTGATCACGAGCAAGTTATGGACTACCACCGAGGA
CGAATTCTGGTGGGGATTGGAGTGAGGAGGGGGATTGTGAAGCATGTAGTGGACGTGATTCCATCTCTCCCTTGCCGCTCCATAAACTCGACCCTCTCGCTTGCCGCCTC
CAAATTTCCATCAATTTTCTTGTATCGTGGCTTCCTCCCTTCAAAAATAGTGTTCTTTGTTCTTGATGGGATTGTGAGGCCTTCTTTTCATACTCTAGGCCAGGCCAATG
GCATCATCCACTTCGAAAGCCCGAAACATATCTGGACACCAATGGAGGATGAAGTTTTGGTCCAGTGCTTGTTACAGTTAGTTCAAGTAGGTGGTTGGAAGGTTGACAAC
GGGACCTTTAGATCGGGGTATTTGCAACAAGTATTGAAGTTGATGAAAGAGAAATTGCCAAGATGCGACATACAAGTGACCTCGACCTTGGAGTACAAAGTGACGATCCT
AAAAAGGCAATACGGTGCCATTGTCAAAATGATGGGTCCCACCTGCAGTGGTTTTTGGTGGAATGATGAGCGAAAGTGCATTGAGGCGGAGAAATCAGTCTTTGATGATT
GGGTTAGGGTACACCCACATGCCCGACGTATGAGGAACAAGTCATTCCCCTACTTCGACGACCTAGCAATTGTGTTCGGGAAGGATAGGGATAATGGAGAAGGTGCTTTG
ACTCCGAAAGAAGTGGCTACCGATCTGGATAAGGGCTGCATGTGTATCTTGGGAAGGCAACCATGA
Protein sequenceShow/hide protein sequence
MIEVDFWLQRLQSSESCRKLQAFEFCRSFNLRSLAAGSGLQSSRFLQEERGFNLQVFLSIRGGVASTKPGCRNISMAFDYSGRQQVGVRNGSGTSMDEIDHEQVMDYHRG
RILVGIGVRRGIVKHVVDVIPSLPCRSINSTLSLAASKFPSIFLYRGFLPSKIVFFVLDGIVRPSFHTLGQANGIIHFESPKHIWTPMEDEVLVQCLLQLVQVGGWKVDN
GTFRSGYLQQVLKLMKEKLPRCDIQVTSTLEYKVTILKRQYGAIVKMMGPTCSGFWWNDERKCIEAEKSVFDDWVRVHPHARRMRNKSFPYFDDLAIVFGKDRDNGEGAL
TPKEVATDLDKGCMCILGRQP