CuGenDBv2

Gene ID	Spg030845
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	60S ribosomal protein L11
Genome location	scaffold11:29291738..29296410
RNA-Seq Expression	Spg030845
Synteny	Spg030845
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR002132 - Ribosomal protein L5 IPR022803 - Ribosomal protein L5 domain superfamily IPR031310 - Ribosomal protein L5, N-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

EMS66091.1 60S ribosomal protein L11 [Triticum urartu]

1.1e-17

64.44

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Query:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVD
        MRDIKVQKLVLNI VGESGDRLTRA+K LEQLSGQSPVF K        GIR NEKIACYVT+RGEKA+    S   ++E ++++  F D
Subjt:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVD

TVU01284.1 hypothetical protein EJB05_53247, partial [Eragrostis curvula]

1.1e-17

65.56

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Query:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVD
        MRDIKVQKLVLNI VGESGDRLTRA K LEQLSGQSPVF K        GIR NEKIACYVTVRGEKA+    S   ++E ++++  F D
Subjt:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVD

VAH58805.1 unnamed protein product [Triticum turgidum subsp. durum]

1.1e-17

64.44

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Query:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVD
        MRDIKVQKLVLNI VGESGDRLTRA+K LEQLSGQSPVF K        GIR NEKIACYVT+RGEKA+    S   ++E ++++  F D
Subjt:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVD

XP_022148025.1 60S ribosomal protein L11 isoform X1 [Momordica charantia]

1.1e-17

65.56

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Query:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVD
        MRDIKVQKLVLNI VGESGDRLTRA K LEQLSGQSPVF K        GIR NEKIACYVTVRGEKA+    S   ++E ++++  F D
Subjt:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVD

XP_022926136.1 60S ribosomal protein L11-1 [Cucurbita moschata]

1.1e-17

65.56

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Query:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVD
        MRDIKVQKLVLNI VGESGDRLTRA K LEQLSGQSPVF K        GIR NEKIACYVTVRGEKA+    S   ++E ++++  F D
Subjt:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVD

TrEMBL top hits

e value

%identity

Alignment

A0A446N950 Uncharacterized protein

5.2e-18

64.44

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Query:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVD
        MRDIKVQKLVLNI VGESGDRLTRA+K LEQLSGQSPVF K        GIR NEKIACYVT+RGEKA+    S   ++E ++++  F D
Subjt:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVD

A0A446NAJ2 Uncharacterized protein

5.2e-18

64.44

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Query:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVD
        MRDIKVQKLVLNI VGESGDRLTRA+K LEQLSGQSPVF K        GIR NEKIACYVT+RGEKA+    S   ++E ++++  F D
Subjt:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVD

M0UFX2 Uncharacterized protein

5.2e-18

64.44

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Query:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVD
        MRDIKVQKLVLNI VGESGDRLTRA+K LEQLSGQSPVF K        GIR NEKIACYVT+RGEKA+    S   ++E ++++  F D
Subjt:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVD

M8A2B4 60S ribosomal protein L11

5.2e-18

64.44

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Query:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVD
        MRDIKVQKLVLNI VGESGDRLTRA+K LEQLSGQSPVF K        GIR NEKIACYVT+RGEKA+    S   ++E ++++  F D
Subjt:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVD

Q5I7L2 Ribosomal protein L11

5.2e-18

64.44

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Query:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVD
        MRDIKVQKLVLNI VGESGDRLTRA+K LEQLSGQSPVF K        GIR NEKIACYVT+RGEKA+    S   ++E ++++  F D
Subjt:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVD

SwissProt top hits

e value

%identity

Alignment

A2YDY2 60S ribosomal protein L11

4.1e-20

78.26

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Query:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI
        MR+IKVQKLVLNI VGESGDRLTRA+K LEQLSGQSPVF K        GIR NEKIACYVTVRGEKA+
Subjt:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI

P42794 60S ribosomal protein L11-2

6.0e-19

48.23

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Query:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVDLSKQSQGGSK
        MRDIKVQKLVLNI VGESGDRLTRA+K LEQLSGQ+PVF K        GIR NEKIACYVTVRGEKA+    S   ++E ++++  F D      G  +
Subjt:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVDLSKQSQGGSK

Query:  VL---TESSPETSSSGSDITLSKSNPFVVVAMAMASSRRKG
         +    +  P T   G D  +    P   VA       R G
Subjt:  VL---TESSPETSSSGSDITLSKSNPFVVVAMAMASSRRKG

P42795 60S ribosomal protein L11-1

6.0e-19

48.23

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Query:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVDLSKQSQGGSK
        MRDIKVQKLVLNI VGESGDRLTRA+K LEQLSGQ+PVF K        GIR NEKIACYVTVRGEKA+    S   ++E ++++  F D      G  +
Subjt:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVDLSKQSQGGSK

Query:  VL---TESSPETSSSGSDITLSKSNPFVVVAMAMASSRRKG
         +    +  P T   G D  +    P   VA       R G
Subjt:  VL---TESSPETSSSGSDITLSKSNPFVVVAMAMASSRRKG

P46287 60S ribosomal protein L11

2.0e-19

62.22

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Query:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVD
        MR+IKVQKLVLNI VGESGDRLTRA K LEQLSGQ+PVF K        GIR NEKIACYVTVRG+KA+    S   ++E ++++  F D
Subjt:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVD

Q0DK10 60S ribosomal protein L11

4.1e-20

78.26

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Query:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI
        MR+IKVQKLVLNI VGESGDRLTRA+K LEQLSGQSPVF K        GIR NEKIACYVTVRGEKA+
Subjt:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI

Arabidopsis top hits

e value

%identity

Alignment

AT2G42740.1 ribosomal protein large subunit 16A

4.2e-20

48.23

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Query:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVDLSKQSQGGSK
        MRDIKVQKLVLNI VGESGDRLTRA+K LEQLSGQ+PVF K        GIR NEKIACYVTVRGEKA+    S   ++E ++++  F D      G  +
Subjt:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVDLSKQSQGGSK

Query:  VL---TESSPETSSSGSDITLSKSNPFVVVAMAMASSRRKG
         +    +  P T   G D  +    P   VA       R G
Subjt:  VL---TESSPETSSSGSDITLSKSNPFVVVAMAMASSRRKG

AT3G58700.1 Ribosomal L5P family protein

4.2e-20

48.23

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Query:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVDLSKQSQGGSK
        MRDIKVQKLVLNI VGESGDRLTRA+K LEQLSGQ+PVF K        GIR NEKIACYVTVRGEKA+    S   ++E ++++  F D      G  +
Subjt:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVDLSKQSQGGSK

Query:  VL---TESSPETSSSGSDITLSKSNPFVVVAMAMASSRRKG
         +    +  P T   G D  +    P   VA       R G
Subjt:  VL---TESSPETSSSGSDITLSKSNPFVVVAMAMASSRRKG

AT4G18730.1 ribosomal protein L16B

4.2e-20

48.23

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Query:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVDLSKQSQGGSK
        MRDIKVQKLVLNI VGESGDRLTRA+K LEQLSGQ+PVF K        GIR NEKIACYVTVRGEKA+    S   ++E ++++  F D      G  +
Subjt:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVDLSKQSQGGSK

Query:  VL---TESSPETSSSGSDITLSKSNPFVVVAMAMASSRRKG
         +    +  P T   G D  +    P   VA       R G
Subjt:  VL---TESSPETSSSGSDITLSKSNPFVVVAMAMASSRRKG

AT5G45775.1 Ribosomal L5P family protein

4.2e-20

48.23

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Query:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVDLSKQSQGGSK
        MRDIKVQKLVLNI VGESGDRLTRA+K LEQLSGQ+PVF K        GIR NEKIACYVTVRGEKA+    S   ++E ++++  F D      G  +
Subjt:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVDLSKQSQGGSK

Query:  VL---TESSPETSSSGSDITLSKSNPFVVVAMAMASSRRKG
         +    +  P T   G D  +    P   VA       R G
Subjt:  VL---TESSPETSSSGSDITLSKSNPFVVVAMAMASSRRKG

AT5G45775.2 Ribosomal L5P family protein

4.2e-20

48.23

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Query:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVDLSKQSQGGSK
        MRDIKVQKLVLNI VGESGDRLTRA+K LEQLSGQ+PVF K        GIR NEKIACYVTVRGEKA+    S   ++E ++++  F D      G  +
Subjt:  MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFK--------GIRCNEKIACYVTVRGEKAI----SEKHLREGKVVKCGFVDLSKQSQGGSK

Query:  VL---TESSPETSSSGSDITLSKSNPFVVVAMAMASSRRKG
         +    +  P T   G D  +    P   VA       R G
Subjt:  VL---TESSPETSSSGSDITLSKSNPFVVVAMAMASSRRKG

Sequences

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CDS sequence

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ATGAGGGATATTAAGGTGCAGAAACTGGTCCTCAATATCTTAGTTGGTGAGAGTGGAGATCGACTTACTAGAGCTACTAAGGCGCTTGAGCAATTAAGCGGCCAAAGCCC
TGTGTTTTTTAAAGGAATCAGATGTAATGAGAAGATTGCTTGCTATGTCACTGTTAGAGGTGAGAAGGCGATTTCTGAAAAACACTTGAGAGAAGGGAAAGTTGTGAAGT
GCGGCTTTGTGGATTTGTCCAAACAATCGCAAGGAGGCAGTAAGGTTCTTACAGAATCGTCTCCAGAAACATCATCTTCTGGAAGTGATATAACATTGTCTAAGTCGAAC
CCCTTTGTGGTTGTGGCTATGGCTATGGCGTCGAGTCGAAGAAAGGGCGCTGGTAAAGCTGTTTTGGCTGCCGCCTCGTGCTGGAAGGAAGGGGTTTTCTTTGTAGTTGT
GGGTTTCTTTGAAGGAAGGGGGTGGATTTGTTGTGGGTTTGTTTTTGAAGAAGAAAAAGAAGGGGGTGGGTTCGGTGGTTTTGAAGAAGAAGAAAAAGGAGGAGGTAGTG
GCATCGGCAGTCGTCGGCGGTGGGAAGGGAAAGGGGGAGGGGGAGGGGGAGGGGAAGAGGAAGCAAAGGGGAGGGGAACCGATTGGGGAGGAGAGAGATAA

mRNA sequence

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Protein sequence

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MRDIKVQKLVLNILVGESGDRLTRATKALEQLSGQSPVFFKGIRCNEKIACYVTVRGEKAISEKHLREGKVVKCGFVDLSKQSQGGSKVLTESSPETSSSGSDITLSKSN
PFVVVAMAMASSRRKGAGKAVLAAASCWKEGVFFVVVGFFEGRGWICCGFVFEEEKEGGGFGGFEEEEKGGGSGIGSRRRWEGKGGGGGGGEEEAKGRGTDWGGER

Spg030845 (gene) of Sponge gourd (cylindrica) v1 genome