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Spg030858 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030858
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description60S ribosomal protein L11
Genome locationscaffold11:24863610..24868476
RNA-Seq ExpressionSpg030858
SyntenySpg030858
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR022803 - Ribosomal protein L5 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACG31637.1 60S ribosomal protein L11-1 [Zea mays]3.9e-0760.42Show/hide
Query:  VETTQARVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVANT
        +E    RV   +RCKSR+GIQH+V KEDAMKWFQVKYEG ++++  NT
Subjt:  VETTQARVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVANT

KAF3961778.1 hypothetical protein CMV_013637 [Castanea mollissima]5.1e-0765.31Show/hide
Query:  RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN-TVVVELG
        RV   +RCKSR+GIQH+V KEDAMKWFQVKYEG ++++  N TV+ ELG
Subjt:  RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN-TVVVELG

NP_001132427.1 60S ribosomal protein L11-1 [Zea mays]3.9e-0760.42Show/hide
Query:  VETTQARVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVANT
        +E    RV   +RCKSR+GIQH+V KEDAMKWFQVKYEG ++++  NT
Subjt:  VETTQARVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVANT

PKI44010.1 hypothetical protein CRG98_035595 [Punica granatum]1.5e-0640.91Show/hide
Query:  DKIICYKATPTPQWKPLLEP-CQIPRSDVL-------SCFVETTQARVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVANT
        +KI CY      +   LLE   ++   ++L        CF    Q  +    +CKSR+GIQH+V KEDAMKWFQVKYEG ++++  NT
Subjt:  DKIICYKATPTPQWKPLLEP-CQIPRSDVL-------SCFVETTQARVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVANT

XP_031104660.1 60S ribosomal protein L11-like [Ipomoea triloba]1.5e-0665.85Show/hide
Query:  RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN
        RV   +RCKSR+GIQH+V KEDAMKWFQVKYEG ++++ +N
Subjt:  RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN

TrEMBL top hitse value%identityAlignment
A0A218X0L8 60S ribosomal protein L11-17.2e-0766.67Show/hide
Query:  RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVANT
        RV   +RCKSR+GIQH+V KEDAMKWFQVKYEG ++++  NT
Subjt:  RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVANT

A0A3L6DTL4 60S ribosomal protein L111.9e-0760.42Show/hide
Query:  VETTQARVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVANT
        +E    RV   +RCKSR+GIQH+V KEDAMKWFQVKYEG ++++  NT
Subjt:  VETTQARVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVANT

A0A5B7BLB3 Putative 60S ribosomal protein L117.2e-0768.29Show/hide
Query:  RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN
        RV   +RCKSR+GIQH+VIKEDAMKWFQVKYEG ++++  N
Subjt:  RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN

B4FGL9 60S ribosomal protein L11-11.9e-0760.42Show/hide
Query:  VETTQARVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVANT
        +E    RV   +RCKSR+GIQH+V KEDAMKWFQVKYEG ++++  NT
Subjt:  VETTQARVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVANT

B6T3F4 60S ribosomal protein L11-11.9e-0760.42Show/hide
Query:  VETTQARVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVANT
        +E    RV   +RCKSR+GIQH+V KEDAMKWFQVKYEG ++++  NT
Subjt:  VETTQARVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVANT

SwissProt top hitse value%identityAlignment
A2YDY2 60S ribosomal protein L113.3e-0961.22Show/hide
Query:  VETTQARVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEV-ANT
        +E    RV   +RCKSR+GIQH+V KEDAMKWFQVKYEG ++++  ANT
Subjt:  VETTQARVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEV-ANT

P42794 60S ribosomal protein L11-22.8e-0860.98Show/hide
Query:  RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN
        RV   +RCK+R+GIQH+V K+DAMKWFQVKYEG ++++  N
Subjt:  RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN

P42795 60S ribosomal protein L11-12.8e-0860.98Show/hide
Query:  RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN
        RV   +RCK+R+GIQH+V K+DAMKWFQVKYEG ++++  N
Subjt:  RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN

P46287 60S ribosomal protein L118.1e-0863.16Show/hide
Query:  RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDE
        RV   +RCK+R+GIQH+V K+DAMKWFQVKYEG ++++
Subjt:  RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDE

Q0DK10 60S ribosomal protein L113.3e-0961.22Show/hide
Query:  VETTQARVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEV-ANT
        +E    RV   +RCKSR+GIQH+V KEDAMKWFQVKYEG ++++  ANT
Subjt:  VETTQARVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEV-ANT

Arabidopsis top hitse value%identityAlignment
AT2G42740.1 ribosomal protein large subunit 16A2.0e-0960.98Show/hide
Query:  RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN
        RV   +RCK+R+GIQH+V K+DAMKWFQVKYEG ++++  N
Subjt:  RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN

AT3G58700.1 Ribosomal L5P family protein2.0e-0960.98Show/hide
Query:  RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN
        RV   +RCK+R+GIQH+V K+DAMKWFQVKYEG ++++  N
Subjt:  RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN

AT4G18730.1 ribosomal protein L16B2.0e-0960.98Show/hide
Query:  RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN
        RV   +RCK+R+GIQH+V K+DAMKWFQVKYEG ++++  N
Subjt:  RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN

AT5G45775.1 Ribosomal L5P family protein2.0e-0960.98Show/hide
Query:  RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN
        RV   +RCK+R+GIQH+V K+DAMKWFQVKYEG ++++  N
Subjt:  RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN

AT5G45775.2 Ribosomal L5P family protein2.0e-0960.98Show/hide
Query:  RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN
        RV   +RCK+R+GIQH+V K+DAMKWFQVKYEG ++++  N
Subjt:  RVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVAN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCTCTCTAATCCCACCCGTTTCTCCCTCAGTCCCGATCGTCTTCTGATAGGAAGCTCAACAGCAGCATGTAGAAGTCATTTATGCGTCGCTCGGCTCGTGGGTCA
CCTTGGATTTGTGTGGGTCAGAGCGAACACCAAGCTTTTATCCCAATTTCTACCATTTCAAGGGAACTCGGCTGTGAAGCCAACTCTGCACTTAGTGCTCAAGCTTCTAG
ACAGTACTATTGAGTCATTTTTAATGTCATTGGATAGGAAGTACAGTGAGGATAAGATAATCTGCTACAAGGCTACTCCAACTCCACAATGGAAACCCTTGCTTGAACCT
TGCCAAATCCCTAGAAGTGATGTCCTGAGCTGTTTTGTTGAGACTACTCAGGCTAGAGTTCGTGCTCTTCAGAGGTGCAAGTCTCGCATCGGGATCCAGCACAAAGTCAT
AAAGGAGGATGCCATGAAGTGGTTCCAGGTGAAATATGAAGGTACTTTAGTGGATGAAGTGGCTAATACTGTAGTAGTGGAGCTTGGTGAAACTCAACTTGTTGTATACT
TCTCCATATGTTGCAAGTTTGTTCCCGATACTTCATTGATTCTCATCTTCACATCGAAACCTAATATATGTTGGACAACAGAATCTGCTAATGGAAAATCTTGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTCTCTCTAATCCCACCCGTTTCTCCCTCAGTCCCGATCGTCTTCTGATAGGAAGCTCAACAGCAGCATGTAGAAGTCATTTATGCGTCGCTCGGCTCGTGGGTCA
CCTTGGATTTGTGTGGGTCAGAGCGAACACCAAGCTTTTATCCCAATTTCTACCATTTCAAGGGAACTCGGCTGTGAAGCCAACTCTGCACTTAGTGCTCAAGCTTCTAG
ACAGTACTATTGAGTCATTTTTAATGTCATTGGATAGGAAGTACAGTGAGGATAAGATAATCTGCTACAAGGCTACTCCAACTCCACAATGGAAACCCTTGCTTGAACCT
TGCCAAATCCCTAGAAGTGATGTCCTGAGCTGTTTTGTTGAGACTACTCAGGCTAGAGTTCGTGCTCTTCAGAGGTGCAAGTCTCGCATCGGGATCCAGCACAAAGTCAT
AAAGGAGGATGCCATGAAGTGGTTCCAGGTGAAATATGAAGGTACTTTAGTGGATGAAGTGGCTAATACTGTAGTAGTGGAGCTTGGTGAAACTCAACTTGTTGTATACT
TCTCCATATGTTGCAAGTTTGTTCCCGATACTTCATTGATTCTCATCTTCACATCGAAACCTAATATATGTTGGACAACAGAATCTGCTAATGGAAAATCTTGTTAA
Protein sequenceShow/hide protein sequence
MSLSNPTRFSLSPDRLLIGSSTAACRSHLCVARLVGHLGFVWVRANTKLLSQFLPFQGNSAVKPTLHLVLKLLDSTIESFLMSLDRKYSEDKIICYKATPTPQWKPLLEP
CQIPRSDVLSCFVETTQARVRALQRCKSRIGIQHKVIKEDAMKWFQVKYEGTLVDEVANTVVVELGETQLVVYFSICCKFVPDTSLILIFTSKPNICWTTESANGKSC