| GenBank top hits | e value | %identity | Alignment |
|---|
| KAG6597731.1 General transcription and DNA repair factor IIH subunit TFB1-1, partial [Cucurbita argyrosperma subsp. sororia] | 7.0e-81 | 77.46 | Show/hide |
Query: LLFLTERKFVFRPSDPTSASKLDVEFRLIKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFVGKPGFKVISCNAIYYLSLCLKLCGNRRL
+L +TERKFVFRPSDPTSASKLDVEFR IKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFV
Subjt: LLFLTERKFVFRPSDPTSASKLDVEFRLIKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFVGKPGFKVISCNAIYYLSLCLKLCGNRRL
Query: IDLKDGSALAKSGEPAQTPSEKPVATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLVGFKSSMVLDTKP
GSALAKSGE Q PSEK VATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERD S KSKQLVGFKSSMVLDTKP
Subjt: IDLKDGSALAKSGEPAQTPSEKPVATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLVGFKSSMVLDTKP
Query: MSDGRVSFITFSL
MSDGR + +TF+L
Subjt: MSDGRVSFITFSL
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| KAG7029183.1 putative RNA polymerase II transcription factor B subunit 1-1 [Cucurbita argyrosperma subsp. argyrosperma] | 7.0e-81 | 77.46 | Show/hide |
Query: LLFLTERKFVFRPSDPTSASKLDVEFRLIKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFVGKPGFKVISCNAIYYLSLCLKLCGNRRL
+L +TERKFVFRPSDPTSASKLDVEFR IKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFV
Subjt: LLFLTERKFVFRPSDPTSASKLDVEFRLIKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFVGKPGFKVISCNAIYYLSLCLKLCGNRRL
Query: IDLKDGSALAKSGEPAQTPSEKPVATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLVGFKSSMVLDTKP
GSALAKSGE Q PSEK VATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERD S KSKQLVGFKSSMVLDTKP
Subjt: IDLKDGSALAKSGEPAQTPSEKPVATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLVGFKSSMVLDTKP
Query: MSDGRVSFITFSL
MSDGR + +TF+L
Subjt: MSDGRVSFITFSL
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| XP_008457278.1 PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Cucumis melo] | 1.2e-80 | 76.06 | Show/hide |
Query: LLFLTERKFVFRPSDPTSASKLDVEFRLIKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFVGKPGFKVISCNAIYYLSLCLKLCGNRRL
+L +TE KFVFRPSDPTSASKLDVEFR IKGHKNTKEGSNKPPWLNLT+DQGGSYIFEFKNFSDLHVCREFV
Subjt: LLFLTERKFVFRPSDPTSASKLDVEFRLIKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFVGKPGFKVISCNAIYYLSLCLKLCGNRRL
Query: IDLKDGSALAKSGEPAQTPSEKPVATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLVGFKSSMVLDTKP
GSALAK GE AQ PSE+PVA FPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERD+SKKSKQL+GFKSSMVLDTKP
Subjt: IDLKDGSALAKSGEPAQTPSEKPVATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLVGFKSSMVLDTKP
Query: MSDGRVSFITFSL
MSDGR + +TF+L
Subjt: MSDGRVSFITFSL
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| XP_022932684.1 probable RNA polymerase II transcription factor B subunit 1-1 [Cucurbita moschata] | 7.0e-81 | 77.46 | Show/hide |
Query: LLFLTERKFVFRPSDPTSASKLDVEFRLIKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFVGKPGFKVISCNAIYYLSLCLKLCGNRRL
+L +TERKFVFRPSDPTSASKLDVEFR IKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFV
Subjt: LLFLTERKFVFRPSDPTSASKLDVEFRLIKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFVGKPGFKVISCNAIYYLSLCLKLCGNRRL
Query: IDLKDGSALAKSGEPAQTPSEKPVATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLVGFKSSMVLDTKP
GSALAKSGE Q PSEK VATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERD S KSKQLVGFKSSMVLDTKP
Subjt: IDLKDGSALAKSGEPAQTPSEKPVATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLVGFKSSMVLDTKP
Query: MSDGRVSFITFSL
MSDGR + +TF+L
Subjt: MSDGRVSFITFSL
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| XP_022972269.1 probable RNA polymerase II transcription factor B subunit 1-1 [Cucurbita maxima] | 7.0e-81 | 77.46 | Show/hide |
Query: LLFLTERKFVFRPSDPTSASKLDVEFRLIKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFVGKPGFKVISCNAIYYLSLCLKLCGNRRL
+L +TERKFVFRPSDPTSASKLDVEFR IKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFV
Subjt: LLFLTERKFVFRPSDPTSASKLDVEFRLIKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFVGKPGFKVISCNAIYYLSLCLKLCGNRRL
Query: IDLKDGSALAKSGEPAQTPSEKPVATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLVGFKSSMVLDTKP
GSALAKSGE Q PSEK VATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERD S KSKQLVGFKSSMVLDTKP
Subjt: IDLKDGSALAKSGEPAQTPSEKPVATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLVGFKSSMVLDTKP
Query: MSDGRVSFITFSL
MSDGR + +TF+L
Subjt: MSDGRVSFITFSL
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A1S3C6E8 probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 | 5.8e-81 | 76.06 | Show/hide |
Query: LLFLTERKFVFRPSDPTSASKLDVEFRLIKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFVGKPGFKVISCNAIYYLSLCLKLCGNRRL
+L +TE KFVFRPSDPTSASKLDVEFR IKGHKNTKEGSNKPPWLNLT+DQGGSYIFEFKNFSDLHVCREFV
Subjt: LLFLTERKFVFRPSDPTSASKLDVEFRLIKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFVGKPGFKVISCNAIYYLSLCLKLCGNRRL
Query: IDLKDGSALAKSGEPAQTPSEKPVATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLVGFKSSMVLDTKP
GSALAK GE AQ PSE+PVA FPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERD+SKKSKQL+GFKSSMVLDTKP
Subjt: IDLKDGSALAKSGEPAQTPSEKPVATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLVGFKSSMVLDTKP
Query: MSDGRVSFITFSL
MSDGR + +TF+L
Subjt: MSDGRVSFITFSL
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| A0A5A7V248 Putative RNA polymerase II transcription factor B subunit 1-1 isoform X1 | 9.9e-81 | 77.03 | Show/hide |
Query: TERKFVFRPSDPTSASKLDVEFRLIKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFVGKPGFKVISCNAIYYLSLCLKLCGNRRLIDLK
TE KFVFRPSDPTSASKLDVEFR IKGHKNTKEGSNKPPWLNLT+DQGGSYIFEFKNFSDLHVCREFV
Subjt: TERKFVFRPSDPTSASKLDVEFRLIKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFVGKPGFKVISCNAIYYLSLCLKLCGNRRLIDLK
Query: DGSALAKSGEPAQTPSEKPVATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLVGFKSSMVLDTKPMSDG
GSALAK GE AQ PSE+PVA FPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERD+SKKSKQL+GFKSSMVLDTKPMSDG
Subjt: DGSALAKSGEPAQTPSEKPVATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLVGFKSSMVLDTKPMSDG
Query: RVSFITFSL
R + +TF+L
Subjt: RVSFITFSL
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| A0A6J1DNY2 probable RNA polymerase II transcription factor B subunit 1-1 isoform X2 | 2.2e-80 | 76.06 | Show/hide |
Query: LLFLTERKFVFRPSDPTSASKLDVEFRLIKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFVGKPGFKVISCNAIYYLSLCLKLCGNRRL
+L +TERKFVF+PSDPTSASKLDVEFR IKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFV
Subjt: LLFLTERKFVFRPSDPTSASKLDVEFRLIKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFVGKPGFKVISCNAIYYLSLCLKLCGNRRL
Query: IDLKDGSALAKSGEPAQTPSEKPVATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLVGFKSSMVLDTKP
GSALAKSGE AQ SE+ VATFPHEQLSK EMELRM+CLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLVGFK+SMVLDTKP
Subjt: IDLKDGSALAKSGEPAQTPSEKPVATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLVGFKSSMVLDTKP
Query: MSDGRVSFITFSL
MSDGR + +TF+L
Subjt: MSDGRVSFITFSL
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| A0A6J1EXP7 probable RNA polymerase II transcription factor B subunit 1-1 | 3.4e-81 | 77.46 | Show/hide |
Query: LLFLTERKFVFRPSDPTSASKLDVEFRLIKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFVGKPGFKVISCNAIYYLSLCLKLCGNRRL
+L +TERKFVFRPSDPTSASKLDVEFR IKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFV
Subjt: LLFLTERKFVFRPSDPTSASKLDVEFRLIKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFVGKPGFKVISCNAIYYLSLCLKLCGNRRL
Query: IDLKDGSALAKSGEPAQTPSEKPVATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLVGFKSSMVLDTKP
GSALAKSGE Q PSEK VATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERD S KSKQLVGFKSSMVLDTKP
Subjt: IDLKDGSALAKSGEPAQTPSEKPVATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLVGFKSSMVLDTKP
Query: MSDGRVSFITFSL
MSDGR + +TF+L
Subjt: MSDGRVSFITFSL
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| A0A6J1IB04 probable RNA polymerase II transcription factor B subunit 1-1 | 3.4e-81 | 77.46 | Show/hide |
Query: LLFLTERKFVFRPSDPTSASKLDVEFRLIKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFVGKPGFKVISCNAIYYLSLCLKLCGNRRL
+L +TERKFVFRPSDPTSASKLDVEFR IKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFV
Subjt: LLFLTERKFVFRPSDPTSASKLDVEFRLIKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFVGKPGFKVISCNAIYYLSLCLKLCGNRRL
Query: IDLKDGSALAKSGEPAQTPSEKPVATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLVGFKSSMVLDTKP
GSALAKSGE Q PSEK VATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERD S KSKQLVGFKSSMVLDTKP
Subjt: IDLKDGSALAKSGEPAQTPSEKPVATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLVGFKSSMVLDTKP
Query: MSDGRVSFITFSL
MSDGR + +TF+L
Subjt: MSDGRVSFITFSL
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P32780 General transcription factor IIH subunit 1 | 5.0e-05 | 37.84 | Show/hide |
Query: SKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKS--KQLVGFKSSMVLDTKPMSDG
+ E+E + R LQED L +L+K V+ V++ EFWA R + D+S S KQ VG ++ + D +P +DG
Subjt: SKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKS--KQLVGFKSSMVLDTKPMSDG
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| Q3ECP0 General transcription and DNA repair factor IIH subunit TFB1-1 | 2.8e-40 | 46.23 | Show/hide |
Query: LFLTERKFVFRPSDPTSASKLDVEFRLIKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFVGKPGFKVISCNAIYYLSLCLKLCGNRRLI
L + E +F P+DP S SKL V + IK K TKEGSNKPPWLNLT Q S+IFEF+N+ D+H CR+F+ K
Subjt: LFLTERKFVFRPSDPTSASKLDVEFRLIKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFVGKPGFKVISCNAIYYLSLCLKLCGNRRLI
Query: DLKDGSALAKSGEPAQTPSEKPVATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLVGFKSSMVLDTKPM
ALAK + K V + EQLS E+ELR + L+E+SELQ+LHKQFV VLTE EFWA RKKLL +D+ +KSKQ +G KS MV KP
Subjt: DLKDGSALAKSGEPAQTPSEKPVATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLVGFKSSMVLDTKPM
Query: SDGRVSFITFSL
+DGR + +TF+L
Subjt: SDGRVSFITFSL
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| Q55FP1 General transcription factor IIH subunit 1 | 1.5e-06 | 32.29 | Show/hide |
Query: SGEPAQTPSE---KPVATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFV-IGGVLTESEFWAARKKLLERDNSKKSKQLVGFKSSMVLDTKPMSD
S +PAQ + K ++ LS+ +++ R+ LQ + EL++L++Q V V++ES+FW +RK +L+ D+++ KQ G S+++ D +P S+
Subjt: SGEPAQTPSE---KPVATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFV-IGGVLTESEFWAARKKLLERDNSKKSKQLVGFKSSMVLDTKPMSD
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| Q9DBA9 General transcription factor IIH subunit 1 | 3.8e-05 | 38.36 | Show/hide |
Query: SKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKS-KQLVGFKSSMVLDTKPMSDG
+ E+E + R LQED L +L+K V+ V++ EFWA R + D+S S KQ VG ++ + D +P +DG
Subjt: SKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKS-KQLVGFKSSMVLDTKPMSDG
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| Q9M322 General transcription and DNA repair factor IIH subunit TFB1-3 | 1.5e-41 | 47.64 | Show/hide |
Query: LFLTERKFVFRPSDPTSASKLDVEFRLIKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFVGKPGFKVISCNAIYYLSLCLKLCGNRRLI
L L+E +F P+DP S KL V+ IK K TKEGSNKPPWLNLT QG S+IFEF+N+ D+H CR+F+ K
Subjt: LFLTERKFVFRPSDPTSASKLDVEFRLIKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFVGKPGFKVISCNAIYYLSLCLKLCGNRRLI
Query: DLKDGSALAKSGEPAQTPSEKPVATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLVGFKSSMVLDTKPM
ALAK E K V P EQLS +E ELR + L+E+SELQKLHKQFV VLTE EFW+ RKKLL +D+ +KSKQ +G KS MV KP
Subjt: DLKDGSALAKSGEPAQTPSEKPVATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLVGFKSSMVLDTKPM
Query: SDGRVSFITFSL
+DGR + +TF+L
Subjt: SDGRVSFITFSL
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