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Spg030868 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030868
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold11:26807784..26813547
RNA-Seq ExpressionSpg030868
SyntenySpg030868
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]2.9e-1145Show/hide
Query:  PRGNRPSLQTRELAKTVEIELSMPDKLPKSAKSFQAK----LQFIFQSELIQ-------DCTSCSTI-QQGQQVSLEEDDVCWLHAIFWTKLVGSSGGGV
        PRGNRP+L T +L KTVEIEL +PD LP SA+S ++     L+  F+S  ++       D    S +  +G    +  DD+CWLHA+FW K  GS GGGV
Subjt:  PRGNRPSLQTRELAKTVEIELSMPDKLPKSAKSFQAK----LQFIFQSELIQ-------DCTSCSTI-QQGQQVSLEEDDVCWLHAIFWTKLVGSSGGGV

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]4.2e-1037.75Show/hide
Query:  KLYRGIESGKSGKVWNVILIIELRIHEHRKPRGNRPSLQTRELAKT-----------------VEIELSMPDKLPKSAKSFQAK----LQFIFQS-----
        KLY  IESGKSGK W+V+L            RGNR SLQ+ EL  T                 VEIEL +PD LP SA+S ++     L+  F+S     
Subjt:  KLYRGIESGKSGKVWNVILIIELRIHEHRKPRGNRPSLQTRELAKT-----------------VEIELSMPDKLPKSAKSFQAK----LQFIFQS-----

Query:  ------ELIQDCTSCSTIQQGQQVSLEEDDVCWLHAIFWTKLVGSSGGGVT
              +++       ++  G    +  DDVCWLHA+F  K VG  GGGVT
Subjt:  ------ELIQDCTSCSTIQQGQQVSLEEDDVCWLHAIFWTKLVGSSGGGVT

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.9e-1138.97Show/hide
Query:  KLYRGIESGKSGKVWNVILIIELRIHEHRKPRGNRPSLQTRELAKT-----------------VEIELSMPDKLPKSAKSFQAKLQFIFQSELIQDCTSC
        KLY  IESGKSG                 KPRGN+PSLQT EL KT                 VEIELS+PD LP SA+S+ +   + F ++++      
Subjt:  KLYRGIESGKSGKVWNVILIIELRIHEHRKPRGNRPSLQTRELAKT-----------------VEIELSMPDKLPKSAKSFQAKLQFIFQSELIQDCTSC

Query:  STIQQGQQVSLEEDDVCWLHAIFWTKLVGSSGGGVT
          +  G    +  DDVC LH +F  K  G  GGGVT
Subjt:  STIQQGQQVSLEEDDVCWLHAIFWTKLVGSSGGGVT

TYK15867.1 hypothetical protein E5676_scaffold637G00440 [Cucumis melo var. makuwa]4.2e-1039.33Show/hide
Query:  KLYRGIESGKSGKVWNVILIIELRIHEHRKPRGNRPSLQTRELAKT-----------------VEIELSMPDKLPKSAKS--------FQAKLQFIFQSE
        KLY  IESGKSGK W+V+            PRGNRPSLQT +L KT                 VEIEL +PD LP SAKS        +   L       
Subjt:  KLYRGIESGKSGKVWNVILIIELRIHEHRKPRGNRPSLQTRELAKT-----------------VEIELSMPDKLPKSAKS--------FQAKLQFIFQSE

Query:  LIQDCTSCSTIQQGQQVSLE--------EDDVCWLHAIFWTKLVGSSGGG
         ++     S ++    V  E         DDVCWLHAIF  K  G SGGG
Subjt:  LIQDCTSCSTIQQGQQVSLE--------EDDVCWLHAIFWTKLVGSSGGG

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]4.2e-1037.75Show/hide
Query:  KLYRGIESGKSGKVWNVILIIELRIHEHRKPRGNRPSLQTRELAKT-----------------VEIELSMPDKLPKSAKSFQAK----LQFIFQS-----
        KLY  IESGKSGK W+V+L            RGNR SLQ+ EL  T                 VEIEL +PD LP SA+S ++     L+  F+S     
Subjt:  KLYRGIESGKSGKVWNVILIIELRIHEHRKPRGNRPSLQTRELAKT-----------------VEIELSMPDKLPKSAKSFQAK----LQFIFQS-----

Query:  ------ELIQDCTSCSTIQQGQQVSLEEDDVCWLHAIFWTKLVGSSGGGVT
              +++       ++  G    +  DDVCWLHA+F  K VG  GGGVT
Subjt:  ------ELIQDCTSCSTIQQGQQVSLEEDDVCWLHAIFWTKLVGSSGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7UAH6 CCHC-type domain-containing protein1.4e-1145Show/hide
Query:  PRGNRPSLQTRELAKTVEIELSMPDKLPKSAKSFQAK----LQFIFQSELIQ-------DCTSCSTI-QQGQQVSLEEDDVCWLHAIFWTKLVGSSGGGV
        PRGNRP+L T +L KTVEIEL +PD LP SA+S ++     L+  F+S  ++       D    S +  +G    +  DD+CWLHA+FW K  GS GGGV
Subjt:  PRGNRPSLQTRELAKTVEIELSMPDKLPKSAKSFQAK----LQFIFQSELIQ-------DCTSCSTI-QQGQQVSLEEDDVCWLHAIFWTKLVGSSGGGV

A0A5A7V9N3 Reverse transcriptase2.0e-1037.75Show/hide
Query:  KLYRGIESGKSGKVWNVILIIELRIHEHRKPRGNRPSLQTRELAKT-----------------VEIELSMPDKLPKSAKSFQAK----LQFIFQS-----
        KLY  IESGKSGK W+V+L            RGNR SLQ+ EL  T                 VEIEL +PD LP SA+S ++     L+  F+S     
Subjt:  KLYRGIESGKSGKVWNVILIIELRIHEHRKPRGNRPSLQTRELAKT-----------------VEIELSMPDKLPKSAKSFQAK----LQFIFQS-----

Query:  ------ELIQDCTSCSTIQQGQQVSLEEDDVCWLHAIFWTKLVGSSGGGVT
              +++       ++  G    +  DDVCWLHA+F  K VG  GGGVT
Subjt:  ------ELIQDCTSCSTIQQGQQVSLEEDDVCWLHAIFWTKLVGSSGGGVT

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein2.4e-1138.97Show/hide
Query:  KLYRGIESGKSGKVWNVILIIELRIHEHRKPRGNRPSLQTRELAKT-----------------VEIELSMPDKLPKSAKSFQAKLQFIFQSELIQDCTSC
        KLY  IESGKSG                 KPRGN+PSLQT EL KT                 VEIELS+PD LP SA+S+ +   + F ++++      
Subjt:  KLYRGIESGKSGKVWNVILIIELRIHEHRKPRGNRPSLQTRELAKT-----------------VEIELSMPDKLPKSAKSFQAKLQFIFQSELIQDCTSC

Query:  STIQQGQQVSLEEDDVCWLHAIFWTKLVGSSGGGVT
          +  G    +  DDVC LH +F  K  G  GGGVT
Subjt:  STIQQGQQVSLEEDDVCWLHAIFWTKLVGSSGGGVT

A0A5D3CVC0 Uncharacterized protein2.0e-1039.33Show/hide
Query:  KLYRGIESGKSGKVWNVILIIELRIHEHRKPRGNRPSLQTRELAKT-----------------VEIELSMPDKLPKSAKS--------FQAKLQFIFQSE
        KLY  IESGKSGK W+V+            PRGNRPSLQT +L KT                 VEIEL +PD LP SAKS        +   L       
Subjt:  KLYRGIESGKSGKVWNVILIIELRIHEHRKPRGNRPSLQTRELAKT-----------------VEIELSMPDKLPKSAKS--------FQAKLQFIFQSE

Query:  LIQDCTSCSTIQQGQQVSLE--------EDDVCWLHAIFWTKLVGSSGGG
         ++     S ++    V  E         DDVCWLHAIF  K  G SGGG
Subjt:  LIQDCTSCSTIQQGQQVSLE--------EDDVCWLHAIFWTKLVGSSGGG

A0A5D3DSY7 Putative Retrotransposon protein2.0e-1037.75Show/hide
Query:  KLYRGIESGKSGKVWNVILIIELRIHEHRKPRGNRPSLQTRELAKT-----------------VEIELSMPDKLPKSAKSFQAK----LQFIFQS-----
        KLY  IESGKSGK W+V+L            RGNR SLQ+ EL  T                 VEIEL +PD LP SA+S ++     L+  F+S     
Subjt:  KLYRGIESGKSGKVWNVILIIELRIHEHRKPRGNRPSLQTRELAKT-----------------VEIELSMPDKLPKSAKSFQAK----LQFIFQS-----

Query:  ------ELIQDCTSCSTIQQGQQVSLEEDDVCWLHAIFWTKLVGSSGGGVT
              +++       ++  G    +  DDVCWLHA+F  K VG  GGGVT
Subjt:  ------ELIQDCTSCSTIQQGQQVSLEEDDVCWLHAIFWTKLVGSSGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCAGCCGAAGGCCAGCGTCGAGACGCTAGGTCGCAGCGTCTCAACGCTGCAATGTCGTGGGCACCAAATCGTGACGGATCAAGGGCAAAACAAAGGAATCAGGCA
AAATTCTCAGAAATGCGACCGCATTTCTGGCAAGGCTAAAGTGATATGCGACCACATTTCTGGACAGAGGCAGACAGTTCCGAGTTCATCAATTCGTGAGCCACAAATGA
CTGGAAGTAGGTTTAATTTCAGGAGAAAAGTAGAAGGTAGCAGGAAGCACGAATTTGGAATAGCTGTGTTCGGGGGATTTCTGGACAAATCCATTAGGAATCTCATTTTC
ATTCTTTGCAGTAAGTTGTACAGGGGTATTGAATCTGGAAAATCTGGAAAAGTGTGGAATGTGATTTTAATTATAGAGTTGAGAATTCATGAGCATAGAAAGCCAAGAGG
AAATAGGCCGAGTCTACAGACCAGGGAACTAGCCAAGACTGTAGAGATCGAGCTCTCGATGCCTGATAAACTACCAAAGTCTGCTAAAAGCTTCCAGGCCAAGCTCCAGT
TTATTTTCCAAAGTGAATTAATTCAGGACTGCACTTCATGTTCAACGATTCAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTTC
TGGACTAAGCTAGTAGGTAGTTCGGGAGGAGGTGTGACAAAAAGGGTCAAACAACATCGGTTCTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCCAGCCGAAGGCCAGCGTCGAGACGCTAGGTCGCAGCGTCTCAACGCTGCAATGTCGTGGGCACCAAATCGTGACGGATCAAGGGCAAAACAAAGGAATCAGGCA
AAATTCTCAGAAATGCGACCGCATTTCTGGCAAGGCTAAAGTGATATGCGACCACATTTCTGGACAGAGGCAGACAGTTCCGAGTTCATCAATTCGTGAGCCACAAATGA
CTGGAAGTAGGTTTAATTTCAGGAGAAAAGTAGAAGGTAGCAGGAAGCACGAATTTGGAATAGCTGTGTTCGGGGGATTTCTGGACAAATCCATTAGGAATCTCATTTTC
ATTCTTTGCAGTAAGTTGTACAGGGGTATTGAATCTGGAAAATCTGGAAAAGTGTGGAATGTGATTTTAATTATAGAGTTGAGAATTCATGAGCATAGAAAGCCAAGAGG
AAATAGGCCGAGTCTACAGACCAGGGAACTAGCCAAGACTGTAGAGATCGAGCTCTCGATGCCTGATAAACTACCAAAGTCTGCTAAAAGCTTCCAGGCCAAGCTCCAGT
TTATTTTCCAAAGTGAATTAATTCAGGACTGCACTTCATGTTCAACGATTCAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTTC
TGGACTAAGCTAGTAGGTAGTTCGGGAGGAGGTGTGACAAAAAGGGTCAAACAACATCGGTTCTCATAA
Protein sequenceShow/hide protein sequence
MFQPKASVETLGRSVSTLQCRGHQIVTDQGQNKGIRQNSQKCDRISGKAKVICDHISGQRQTVPSSSIREPQMTGSRFNFRRKVEGSRKHEFGIAVFGGFLDKSIRNLIF
ILCSKLYRGIESGKSGKVWNVILIIELRIHEHRKPRGNRPSLQTRELAKTVEIELSMPDKLPKSAKSFQAKLQFIFQSELIQDCTSCSTIQQGQQVSLEEDDVCWLHAIF
WTKLVGSSGGGVTKRVKQHRFS