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Spg030875 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030875
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold11:27688861..27696262
RNA-Seq ExpressionSpg030875
SyntenySpg030875
Gene Ontology termsGO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0004519 - endonuclease activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsIPR009027 - Ribosomal protein L9/RNase H1, N-terminal
IPR011320 - Ribonuclease H1, N-terminal
IPR037056 - Ribonuclease H1, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EFV27728.1 ribonuclease HI [Bacteroides sp. 4_1_36]1.1e-0633.33Show/hide
Query:  LRLVAFVCYTIHPPFDEVGHETGSGRTSLVGRLNPLQRNRVMGGNKFYVVFIGRMPGVYTMWYDCSCQVHGFSGTVYQSYVTLDAAEAAYTVHEGKLHLC
        L L++F+ + ++PP+ E      + R  L G  + L  + VM   K+YVV+ G  PG+YT W DC  Q  G+ G  Y+S+ + + AE A+          
Subjt:  LRLVAFVCYTIHPPFDEVGHETGSGRTSLVGRLNPLQRNRVMGGNKFYVVFIGRMPGVYTMWYDCSCQVHGFSGTVYQSYVTLDAAEAAYTVHEGKLHLC

Query:  TSSPKRLIDRNVVSTIVRTCSGA
         SSP   I R+  S   +T  GA
Subjt:  TSSPKRLIDRNVVSTIVRTCSGA

MBC8314618.1 viroplasmin family protein [Bacteroidetes bacterium]5.1e-0743.66Show/hide
Query:  MGGNKFYVVFIGRMPGVYTMWYDCSCQVHGFSGTVYQSYVTLDAAEAAY-TVHEGKLHLCTSSPKRLIDRN
        M  NKFYVV++G+ PG+YT W DC  QV G++G  Y+ + TL+ A AA+   HE  L    ++PK+++  N
Subjt:  MGGNKFYVVFIGRMPGVYTMWYDCSCQVHGFSGTVYQSYVTLDAAEAAY-TVHEGKLHLCTSSPKRLIDRN

MBN1198131.1 viroplasmin family protein [Bacteroidales bacterium]5.6e-0643.59Show/hide
Query:  MGGNKFYVVFIGRMPGVYTMWYDCSCQVHGFSGTVYQSYVTLDAAEAAY-TVHEGKLHLCTSSPKRLI-DRNVVSTIV
        M  NKFYVV++G  PGVY  W DC  QV GF+G  Y+ + T + AEAA+   HE  L    ++PK+++ D  ++ T V
Subjt:  MGGNKFYVVFIGRMPGVYTMWYDCSCQVHGFSGTVYQSYVTLDAAEAAY-TVHEGKLHLCTSSPKRLI-DRNVVSTIV

MBQ1972841.1 ribonuclease H family protein [Paraprevotella sp.]5.6e-0653.06Show/hide
Query:  MGGNKFYVVFIGRMPGVYTMWYDCSCQVHGFSGTVYQSYVTLDAAEAAY
        MGG KFYVV+ G  PG+Y+ W +C  Q++GF G VY+S+ T + AE AY
Subjt:  MGGNKFYVVFIGRMPGVYTMWYDCSCQVHGFSGTVYQSYVTLDAAEAAY

TSA24705.1 ribonuclease H [Bacteroidetes bacterium]6.6e-0745.07Show/hide
Query:  MGGNKFYVVFIGRMPGVYTMWYDCSCQVHGFSGTVYQSYVTLDAAEAAY-TVHEGKLHLCTSSPKRLIDRN
        M  NKFYVV++G+ PGVYT W +C  QV G++G  Y+ + TL+ AEAA+   HE  L    ++PK ++  N
Subjt:  MGGNKFYVVFIGRMPGVYTMWYDCSCQVHGFSGTVYQSYVTLDAAEAAY-TVHEGKLHLCTSSPKRLIDRN

TrEMBL top hitse value%identityAlignment
A0A078MFV1 Ribonuclease H2.7e-0640.51Show/hide
Query:  KFYVVFIGRMPGVYTMWYDCSCQVHGFSGTVYQSYVTLDAAEAAYTVHEGKLHLCTSSPKRLIDRNVVSTIVRTCSGAY
        KFY V +GR PGVYT W  C+ QV GFSG VY+S+ T   AEA     + +  +  +S + L++    ST++    G+Y
Subjt:  KFYVVFIGRMPGVYTMWYDCSCQVHGFSGTVYQSYVTLDAAEAAYTVHEGKLHLCTSSPKRLIDRNVVSTIVRTCSGAY

A0A087N0D2 RNase H domain-containing protein2.7e-0640.51Show/hide
Query:  KFYVVFIGRMPGVYTMWYDCSCQVHGFSGTVYQSYVTLDAAEAAYTVHEGKLHLCTSSPKRLIDRNVVSTIVRTCSGAY
        KFY V +GR PGVYT W  C+ QV GFSG VY+S+ T   AEA     + +  +  +S + L++    ST++    G+Y
Subjt:  KFYVVFIGRMPGVYTMWYDCSCQVHGFSGTVYQSYVTLDAAEAAYTVHEGKLHLCTSSPKRLIDRNVVSTIVRTCSGAY

A0A550BUU9 Uncharacterized protein3.5e-0651.72Show/hide
Query:  YVVFIGRMPGVYTMWYDCSCQVHGFSGTVYQSYVTLDAAEAAYTVHEGKLHLCTSSPK
        Y VF+GR PG YT W DC  QV G S   Y+SY TL AAE AY+    +  +CTS  K
Subjt:  YVVFIGRMPGVYTMWYDCSCQVHGFSGTVYQSYVTLDAAEAAYTVHEGKLHLCTSSPK

A0A6N3EQ78 Ribonuclease H4.6e-0653.06Show/hide
Query:  MGGNKFYVVFIGRMPGVYTMWYDCSCQVHGFSGTVYQSYVTLDAAEAAY
        MG  KFYVV+ G  PG+YT W DC  Q++GF G +Y+S+ T + AE AY
Subjt:  MGGNKFYVVFIGRMPGVYTMWYDCSCQVHGFSGTVYQSYVTLDAAEAAY

E5V604 Ribonuclease HI5.5e-0733.33Show/hide
Query:  LRLVAFVCYTIHPPFDEVGHETGSGRTSLVGRLNPLQRNRVMGGNKFYVVFIGRMPGVYTMWYDCSCQVHGFSGTVYQSYVTLDAAEAAYTVHEGKLHLC
        L L++F+ + ++PP+ E      + R  L G  + L  + VM   K+YVV+ G  PG+YT W DC  Q  G+ G  Y+S+ + + AE A+          
Subjt:  LRLVAFVCYTIHPPFDEVGHETGSGRTSLVGRLNPLQRNRVMGGNKFYVVFIGRMPGVYTMWYDCSCQVHGFSGTVYQSYVTLDAAEAAYTVHEGKLHLC

Query:  TSSPKRLIDRNVVSTIVRTCSGA
         SSP   I R+  S   +T  GA
Subjt:  TSSPKRLIDRNVVSTIVRTCSGA

SwissProt top hitse value%identityAlignment
Q07762 Ribonuclease H3.1e-0752Show/hide
Query:  FYVVFIGRMPGVYTMWYDCSCQVHGFSGTVYQSYVTLDAAEAAYTVHEGK
        FYVV +GR  G+Y+ W  CS QV GFSG VY+S+ TL  A A  T H  +
Subjt:  FYVVFIGRMPGVYTMWYDCSCQVHGFSGTVYQSYVTLDAAEAAYTVHEGK

Q9KEI9 Ribonuclease H9.0e-0745.28Show/hide
Query:  MGGNKFYVVFIGRMPGVYTMWYDCSCQVHGFSGTVYQSYVTLDAAEAAYTVHE
        M  +K+YVV+ GR PG+YT W  C  QV G++G  ++SY + + AEAA+   E
Subjt:  MGGNKFYVVFIGRMPGVYTMWYDCSCQVHGFSGTVYQSYVTLDAAEAAYTVHE

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGGTTCCGTTCTCGTCGTCTTCTTCTCCCCTGGATCCTTTCTTCTAGGGAATCTTCTTTTGAGGCCAGATCTCCGTCTGGTTGCCTTCGTATGCTACACCATCCA
TCCACCATTCGACGAGGTCGGGCATGAGACTGGTTCGGGGAGGACGAGCTTGGTAGGGAGGCTAAATCCTTTGCAAAGAAACAGGGTTATGGGAGGGAACAAGTTCTACG
TCGTTTTCATCGGGCGCATGCCTGGTGTTTACACGATGTGGTACGATTGTTCATGCCAAGTACACGGTTTTAGTGGCACCGTATACCAGTCGTATGTCACGTTGGATGCC
GCAGAAGCAGCTTATACCGTTCATGAAGGAAAACTTCACCTATGCACTAGCTCGCCTAAACGTCTCATAGATAGGAATGTAGTTAGTACGATTGTTAGGACATGTAGTGG
AGCATACCATGTTCTCCTCTTCATAATAGGGTTCTTGTTTGGTGTAGTCGTAGTCATATTAGTATCAGTTCATCGTGGTAGTATTAGGGATTTTGCAATGGCATCATTCC
TGGGACATTTGATCGCCTACTCCTTACTTCGATTGCACACAGTCCTACTCAAAGCACCTAAACCAGTTACGAACACGTTCACAGACGATAGGTGGAAGTGGTTTGAGGAC
AAGTACGATGTATGTGAAGTTGTAAATGTCTGCAGCGTCGAGACACTAGGGACAACGTCTCGACGCTACCCCTTTGTCGCCTCAATTATAAAAGGAAATCTTCGACAGCG
TCAAGACGCTAAGGGACAGCGTCTCGATGCTGTCGTCTCGGAAAAAATGGCTTGGGAAGAGCCTATAGTTTCATCGAGACGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGGTTCCGTTCTCGTCGTCTTCTTCTCCCCTGGATCCTTTCTTCTAGGGAATCTTCTTTTGAGGCCAGATCTCCGTCTGGTTGCCTTCGTATGCTACACCATCCA
TCCACCATTCGACGAGGTCGGGCATGAGACTGGTTCGGGGAGGACGAGCTTGGTAGGGAGGCTAAATCCTTTGCAAAGAAACAGGGTTATGGGAGGGAACAAGTTCTACG
TCGTTTTCATCGGGCGCATGCCTGGTGTTTACACGATGTGGTACGATTGTTCATGCCAAGTACACGGTTTTAGTGGCACCGTATACCAGTCGTATGTCACGTTGGATGCC
GCAGAAGCAGCTTATACCGTTCATGAAGGAAAACTTCACCTATGCACTAGCTCGCCTAAACGTCTCATAGATAGGAATGTAGTTAGTACGATTGTTAGGACATGTAGTGG
AGCATACCATGTTCTCCTCTTCATAATAGGGTTCTTGTTTGGTGTAGTCGTAGTCATATTAGTATCAGTTCATCGTGGTAGTATTAGGGATTTTGCAATGGCATCATTCC
TGGGACATTTGATCGCCTACTCCTTACTTCGATTGCACACAGTCCTACTCAAAGCACCTAAACCAGTTACGAACACGTTCACAGACGATAGGTGGAAGTGGTTTGAGGAC
AAGTACGATGTATGTGAAGTTGTAAATGTCTGCAGCGTCGAGACACTAGGGACAACGTCTCGACGCTACCCCTTTGTCGCCTCAATTATAAAAGGAAATCTTCGACAGCG
TCAAGACGCTAAGGGACAGCGTCTCGATGCTGTCGTCTCGGAAAAAATGGCTTGGGAAGAGCCTATAGTTTCATCGAGACGCTAA
Protein sequenceShow/hide protein sequence
MSGSVLVVFFSPGSFLLGNLLLRPDLRLVAFVCYTIHPPFDEVGHETGSGRTSLVGRLNPLQRNRVMGGNKFYVVFIGRMPGVYTMWYDCSCQVHGFSGTVYQSYVTLDA
AEAAYTVHEGKLHLCTSSPKRLIDRNVVSTIVRTCSGAYHVLLFIIGFLFGVVVVILVSVHRGSIRDFAMASFLGHLIAYSLLRLHTVLLKAPKPVTNTFTDDRWKWFED
KYDVCEVVNVCSVETLGTTSRRYPFVASIIKGNLRQRQDAKGQRLDAVVSEKMAWEEPIVSSRR