CuGenDBv2

Gene ID	Spg030887
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA-directed RNA polymerase subunit
Genome location	scaffold11:25840269..25842813
RNA-Seq Expression	Spg030887
Synteny	Spg030887
Gene Ontology terms	GO:0006386 - termination of RNA polymerase III transcription (biological process) GO:0042779 - tRNA 3'-trailer cleavage (biological process) GO:0005666 - RNA polymerase III complex (cellular component) GO:0005730 - nucleolus (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001529 - DNA-directed RNA polymerase, M/15kDa subunit IPR012164 - DNA-directed RNA polymerase subunit/transcription factor S IPR019761 - DNA-directed RNA polymerase M, 15kDa subunit, conserved site IPR029401 - Nudix hydrolase, N-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6597716.1 DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. sororia]

1.1e-32

87.8

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Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE----DKGFVRRGFI
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE    + GF +  FI
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE----DKGFVRRGFI

KAG7029162.1 DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.1e-32

87.8

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Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE----DKGFVRRGFI
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE    + GF +  FI
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE----DKGFVRRGFI

XP_004141147.1 DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus]

3.3e-32

100

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Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE

XP_022932603.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata]

1.1e-32

87.8

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Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE----DKGFVRRGFI
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE    + GF +  FI
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE----DKGFVRRGFI

XP_038903069.1 DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida]

3.3e-32

100

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Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LCM4 DNA-directed RNA polymerase subunit

1.6e-32

100

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Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE

A0A1S3CQ50 DNA-directed RNA polymerase subunit

1.6e-32

100

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Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE

A0A6J1DGL3 DNA-directed RNA polymerase subunit

8.7e-31

94.12

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Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYV +LENRVKIKRKQHL+KKELEPIISD+DMKNAAQTE
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE

A0A6J1EXG3 DNA-directed RNA polymerase subunit

5.5e-33

87.8

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Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE----DKGFVRRGFI
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE    + GF +  FI
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE----DKGFVRRGFI

A0A6J1IB59 DNA-directed RNA polymerase subunit

5.5e-33

87.8

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Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE----DKGFVRRGFI
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE    + GF +  FI
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE----DKGFVRRGFI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G01210.1 DNA-directed RNA polymerase, subunit M, archaeal

5.8e-19

57.35

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Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE
        MEFCPTCGN+L++E    G +SRFFC TCPYV+Y++ +V+IK+KQ LVKK +E +++ DD+  AA+TE
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE

AT4G07950.1 DNA-directed RNA polymerase, subunit M, archaeal

5.2e-20

61.76

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Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE
        MEFCPTCGN+L++E    G SSRFFC TCPYV+ +E RV+IK+KQ LVKK +EP+++ DD+  AA+TE
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE

Sequences

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CDS sequence

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ATGGAGTTTTGCCCAACTTGTGGGAACATGCTGCAATTTGAGTTGCCCAATATGGGTAAATCTTCTAGATTCTTTTGCCCGACTTGTCCATATGTGTCTTACTTGGAGAA
TAGGGTAAAGATCAAAAGAAAGCAACATTTGGTGAAAAAGGAATTAGAACCCATAATATCTGATGACGATATGAAAAATGCAGCTCAAACCGAAGATAAGGGGTTTGTCA
GAAGAGGGTTTATAAATGAAGTGGATTGGACGGGTTATGGGGGAGGAAACTGGAAATAG

mRNA sequence

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Protein sequence

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MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEDKGFVRRGFINEVDWTGYGGGNWK

Spg030887 (gene) of Sponge gourd (cylindrica) v1 genome