CuGenDBv2

Gene ID	Spg030905
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	U11/U12 small nuclear ribonucleoprotein 65 kDa protein
Genome location	scaffold11:25896666..25922657
RNA-Seq Expression	Spg030905
Synteny	Spg030905
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6597718.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein, partial [Cucurbita argyrosperma subsp. sororia]

7.8e-25

64.29

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Query:  LKEAAPDKAGKLTTPQQRIKIFLRLPAENATKRANYMGHHSR-KSLKSDVEGKYNSSGVSKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKE
        L  + P     LT P       L  PA    +  N     S  +S + DVEGKYNSSGVSKTA+SGNKRSRCE IVGPGIDKDVAHE VGVKPSTLVPKE
Subjt:  LKEAAPDKAGKLTTPQQRIKIFLRLPAENATKRANYMGHHSR-KSLKSDVEGKYNSSGVSKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKE

Query:  IPMIKKKNPVFQ
        IPMIKKKNPVFQ
Subjt:  IPMIKKKNPVFQ

KAG7029165.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita argyrosperma subsp. argyrosperma]

7.8e-25

64.29

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Query:  LKEAAPDKAGKLTTPQQRIKIFLRLPAENATKRANYMGHHSR-KSLKSDVEGKYNSSGVSKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKE
        L  + P     LT P       L  PA    +  N     S  +S + DVEGKYNSSGVSKTA+SGNKRSRCE IVGPGIDKDVAHE VGVKPSTLVPKE
Subjt:  LKEAAPDKAGKLTTPQQRIKIFLRLPAENATKRANYMGHHSR-KSLKSDVEGKYNSSGVSKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKE

Query:  IPMIKKKNPVFQ
        IPMIKKKNPVFQ
Subjt:  IPMIKKKNPVFQ

XP_022932769.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita moschata]

7.8e-25

64.29

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Query:  LKEAAPDKAGKLTTPQQRIKIFLRLPAENATKRANYMGHHSR-KSLKSDVEGKYNSSGVSKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKE
        L  + P     LT P       L  PA    +  N     S  +S + DVEGKYNSSGVSKTA+SGNKRSRCE IVGPGIDKDVAHE VGVKPSTLVPKE
Subjt:  LKEAAPDKAGKLTTPQQRIKIFLRLPAENATKRANYMGHHSR-KSLKSDVEGKYNSSGVSKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKE

Query:  IPMIKKKNPVFQ
        IPMIKKKNPVFQ
Subjt:  IPMIKKKNPVFQ

XP_022972081.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita maxima]

7.8e-25

64.29

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Query:  LKEAAPDKAGKLTTPQQRIKIFLRLPAENATKRANYMGHHSR-KSLKSDVEGKYNSSGVSKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKE
        L  + P     LT P       L  PA    +  N     S  +S + DVEGKYNSSGVSKTA+SGNKRSRCE IVGPGIDKDVAHE VGVKPSTLVPKE
Subjt:  LKEAAPDKAGKLTTPQQRIKIFLRLPAENATKRANYMGHHSR-KSLKSDVEGKYNSSGVSKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKE

Query:  IPMIKKKNPVFQ
        IPMIKKKNPVFQ
Subjt:  IPMIKKKNPVFQ

XP_023540623.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita pepo subsp. pepo]

7.8e-25

64.29

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Query:  LKEAAPDKAGKLTTPQQRIKIFLRLPAENATKRANYMGHHSR-KSLKSDVEGKYNSSGVSKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKE
        L  + P     LT P       L  PA    +  N     S  +S + DVEGKYNSSGVSKTA+SGNKRSRCE IVGPGIDKDVAHE VGVKPSTLVPKE
Subjt:  LKEAAPDKAGKLTTPQQRIKIFLRLPAENATKRANYMGHHSR-KSLKSDVEGKYNSSGVSKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKE

Query:  IPMIKKKNPVFQ
        IPMIKKKNPVFQ
Subjt:  IPMIKKKNPVFQ

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BIH7 U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1

6.4e-25

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Query:  PAENATKRANYMGHHSR-KSLKSDVEGKYNSSGVSKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPVFQV
        PA + ++  N     S  +S + DVEGKYNSSGVSKTAKSG KR RCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV Q+
Subjt:  PAENATKRANYMGHHSR-KSLKSDVEGKYNSSGVSKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPVFQV

A0A5A7TXT1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1

6.4e-25

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Query:  PAENATKRANYMGHHSR-KSLKSDVEGKYNSSGVSKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPVFQV
        PA + ++  N     S  +S + DVEGKYNSSGVSKTAKSG KR RCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV Q+
Subjt:  PAENATKRANYMGHHSR-KSLKSDVEGKYNSSGVSKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPVFQV

A0A5D3CT62 U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1

6.4e-25

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Query:  PAENATKRANYMGHHSR-KSLKSDVEGKYNSSGVSKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPVFQV
        PA + ++  N     S  +S + DVEGKYNSSGVSKTAKSG KR RCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV Q+
Subjt:  PAENATKRANYMGHHSR-KSLKSDVEGKYNSSGVSKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPVFQV

A0A6J1EXB4 U11/U12 small nuclear ribonucleoprotein 65 kDa protein

3.8e-25

64.29

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Query:  LKEAAPDKAGKLTTPQQRIKIFLRLPAENATKRANYMGHHSR-KSLKSDVEGKYNSSGVSKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKE
        L  + P     LT P       L  PA    +  N     S  +S + DVEGKYNSSGVSKTA+SGNKRSRCE IVGPGIDKDVAHE VGVKPSTLVPKE
Subjt:  LKEAAPDKAGKLTTPQQRIKIFLRLPAENATKRANYMGHHSR-KSLKSDVEGKYNSSGVSKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKE

Query:  IPMIKKKNPVFQ
        IPMIKKKNPVFQ
Subjt:  IPMIKKKNPVFQ

A0A6J1I4Z6 U11/U12 small nuclear ribonucleoprotein 65 kDa protein

3.8e-25

64.29

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Query:  LKEAAPDKAGKLTTPQQRIKIFLRLPAENATKRANYMGHHSR-KSLKSDVEGKYNSSGVSKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKE
        L  + P     LT P       L  PA    +  N     S  +S + DVEGKYNSSGVSKTA+SGNKRSRCE IVGPGIDKDVAHE VGVKPSTLVPKE
Subjt:  LKEAAPDKAGKLTTPQQRIKIFLRLPAENATKRANYMGHHSR-KSLKSDVEGKYNSSGVSKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKE

Query:  IPMIKKKNPVFQ
        IPMIKKKNPVFQ
Subjt:  IPMIKKKNPVFQ

SwissProt top hits

e value

%identity

Alignment

Q8RWV8 U11/U12 small nuclear ribonucleoprotein 65 kDa protein

9.6e-10

52.24

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Query:  KSDVEGKYNSSGVSKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPVFQV
        +S  E +  S     T+KSG KR+R   +VG G+DKDV HE VGVKPS+L PKEIP I+K   V Q+
Subjt:  KSDVEGKYNSSGVSKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPVFQV

Arabidopsis top hits

e value

%identity

Alignment

AT1G09230.1 RNA-binding (RRM/RBD/RNP motifs) family protein

6.8e-11

52.24

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Query:  KSDVEGKYNSSGVSKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPVFQV
        +S  E +  S     T+KSG KR+R   +VG G+DKDV HE VGVKPS+L PKEIP I+K   V Q+
Subjt:  KSDVEGKYNSSGVSKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPVFQV

Sequences

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CDS sequence

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ATGGAGGAGGAACTCCTCGATCATCTCCCTACAACGACGCTGGCCCACAGTCTGATACCTGAAAACCTCAAAGAAGCGGCTCCAGACAAAGCGGGCAAACTCACAACCCC
ACAGCAAAGGATCAAGATCTTCCTCCGCCTTCCGGCAGAGAATGCAACAAAAAGGGCCAACTACATGGGGCATCACTCTCGAAAGTCTCTCAAAAGTGATGTGGAAGGAA
AATATAATTCAAGTGGAGTCTCAAAAACTGCAAAATCAGGAAACAAGCGTTCTAGGTGTGAAACAATTGTAGGCCCCGGGATAGATAAAGATGTGGCTCATGAGGCTGTT
GGGGTGAAACCTTCCACATTGGTCCCAAAAGAGATTCCGATGATAAAAAAGAAAAACCCAGTGTTTCAGGTTGCTTTTATCATAAGATGTAACTAA

mRNA sequence

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Protein sequence

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MEEELLDHLPTTTLAHSLIPENLKEAAPDKAGKLTTPQQRIKIFLRLPAENATKRANYMGHHSRKSLKSDVEGKYNSSGVSKTAKSGNKRSRCETIVGPGIDKDVAHEAV
GVKPSTLVPKEIPMIKKKNPVFQVAFIIRCN

Spg030905 (gene) of Sponge gourd (cylindrica) v1 genome