; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg030926 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030926
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold11:28315252..28318896
RNA-Seq ExpressionSpg030926
SyntenySpg030926
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_030494802.1 uncharacterized protein LOC115710583 [Cannabis sativa]2.6e-5546.26Show/hide
Query:  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAKTFNEAYEILERISTNSCQWSDVRG-TNKKVKSVLEVDGVS
        F+Q EDET S+AWERFKE+LRKCPHHG+PHCIQ++TFYNGLNA ++ ++DASA GA+L+K++NEA+EILERI++N+ QWS  R  T++KV  VLEVD ++
Subjt:  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAKTFNEAYEILERISTNSCQWSDVRG-TNKKVKSVLEVDGVS

Query:  TIRADLAMIANALKNVTVISHQQPPVV----------------------EPAAVVL--------------------------PQQNKQALPQQNSGNSLE
         + A +A + N LKN+ +    QP                          PA+V                            PQQ  Q  PQ +  +SLE
Subjt:  TIRADLAMIANALKNVTVISHQQPPVV----------------------EPAAVVL--------------------------PQQNKQALPQQNSGNSLE

Query:  AMMKEFMARTDAAIQSNQASMRALELQVGQLANELKARPQGKLLSDTEHPRREGKEQVKAVTLRSGKPLEERKGPSKTQDT
        ++M+++MA+ DA IQS  AS++ LE+Q+GQLAN+LK RPQG L SDTE+PRR+GKE  KAVTLRSGK +E     + ++++
Subjt:  AMMKEFMARTDAAIQSNQASMRALELQVGQLANELKARPQGKLLSDTEHPRREGKEQVKAVTLRSGKPLEERKGPSKTQDT

XP_030503898.1 uncharacterized protein LOC115719117 [Cannabis sativa]2.2e-5444.75Show/hide
Query:  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAKTFNEAYEILERISTNSCQWSDVRG-TNKKVKSVLEVDGVS
        F+QLEDET S+AWERFKELLRKCPHHG+PHCIQ++TFYNGLNA ++ ++DASA GA+L+K++NEA+EILERI++N+ QWS  R  T++KV  VLEVD ++
Subjt:  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAKTFNEAYEILERISTNSCQWSDVRG-TNKKVKSVLEVDGVS

Query:  TIRADLAMIANALKNVTVISHQQP----------------------------------------------------------PVVEPAAVVLPQQNKQAL
         + A +A + N LKN+ +    QP                                                              P     P+  +   
Subjt:  TIRADLAMIANALKNVTVISHQQP----------------------------------------------------------PVVEPAAVVLPQQNKQAL

Query:  PQQNSGNSLEAMMKEFMARTDAAIQSNQASMRALELQVGQLANELKARPQGKLLSDTEHPRREGKEQVKAVTLRSGKPLEER------KGPSKTQ
        PQ +  +SLE++M+++MA+ DA IQS  AS+R LE+Q+GQLAN+LK RPQG L SDTE+PRR+GKE  KAVTLRSGK +E        K PS  Q
Subjt:  PQQNSGNSLEAMMKEFMARTDAAIQSNQASMRALELQVGQLANELKARPQGKLLSDTEHPRREGKEQVKAVTLRSGKPLEER------KGPSKTQ

XP_030505222.1 uncharacterized protein LOC115720205 [Cannabis sativa]4.1e-5347.04Show/hide
Query:  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAKTFNEAYEILERISTNSCQWSDVRG-TNKKVKSVLEVDGVS
        F+QLEDET S+AWERFKELLRKCPHHG+PHCIQ++TFYNGLNA ++ ++DASA GA+L+K++NEA+EILERI++N+ QWS  R  T++KV  VLEVD ++
Subjt:  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAKTFNEAYEILERISTNSCQWSDVRG-TNKKVKSVLEVDGVS

Query:  TIRADLAMIANALKNVTVISHQQPPVVEPAAVV------------------------------------------------LPQQNKQALPQQNSGNSLE
         + A +A + N LKN+ +    QP      A +                                                 PQQ  Q  PQ +  +SLE
Subjt:  TIRADLAMIANALKNVTVISHQQPPVVEPAAVV------------------------------------------------LPQQNKQALPQQNSGNSLE

Query:  AMMKEFMARTDAAIQSNQASMRALELQVGQLANELKARPQGKLLSDTEHPRREGKEQVKAVTLRSGKPLE
        ++M+++MA+ DA IQS       LE+Q+GQLAN+LK RPQG L SDTE+PRR+ KE  KAVTLRSGK +E
Subjt:  AMMKEFMARTDAAIQSNQASMRALELQVGQLANELKARPQGKLLSDTEHPRREGKEQVKAVTLRSGKPLE

XP_030509265.1 uncharacterized protein LOC115723943 [Cannabis sativa]3.6e-5753.09Show/hide
Query:  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAKTFNEAYEILERISTNSCQWSDVRG-TNKKVKSVLEVDGVS
        F++LEDE+ S+AWERFKELLRKCPHHG+PHCIQM+TFYNGLNA ++ ++DASA GA+L+K++NEA+EILE I++N+ QWS+ R  T++KV  VLEVD ++
Subjt:  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAKTFNEAYEILERISTNSCQWSDVRG-TNKKVKSVLEVDGVS

Query:  TIRADLAMIANALKNVTVISHQQPPVVEPAAVVLPQQNKQALP-------------QQNSGNSLEAMMKEFMARTDAAIQSNQASMRALELQVGQLANEL
         + A +A + N   N++           PA      Q +QA P             Q    +SLE++M+++MA+ DA IQS  AS+R LELQ+G LANEL
Subjt:  TIRADLAMIANALKNVTVISHQQPPVVEPAAVVLPQQNKQALP-------------QQNSGNSLEAMMKEFMARTDAAIQSNQASMRALELQVGQLANEL

Query:  KARPQGKLLSDTEHPRREGKEQVKAVTLRSGKPL----EERKG
        KARPQG L SDTE+PRR+GKEQ K++ LRSGK L    EE KG
Subjt:  KARPQGKLLSDTEHPRREGKEQVKAVTLRSGKPL----EERKG

XP_030510138.1 uncharacterized protein LOC115724905 [Cannabis sativa]6.9e-5344.71Show/hide
Query:  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAKTFNEAYEILERISTNSCQWSDVRG-TNKKVKSVLEVDGVS
        F+QLEDET S+AWERFKELLRKCPHHG+PHCIQ++TFYNGLNA ++ ++DASA GA+L+K++NEA+EILERI++N+ QWS  R  T++KV  VLEVD ++
Subjt:  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAKTFNEAYEILERISTNSCQWSDVRG-TNKKVKSVLEVDGVS

Query:  TIRADLAMIANALKNVTVISHQQPPVV----------------------EPAAVV---------------------------------------LPQQNK
         + A +A + N LKN+ +    QP                          PA+V                                           Q K
Subjt:  TIRADLAMIANALKNVTVISHQQPPVV----------------------EPAAVV---------------------------------------LPQQNK

Query:  QAL----------PQQNSGNSLEAMMKEFMARTDAAIQSNQASMRALELQVGQLANELKARPQGKLLSDTEHPRREGKEQVKAVTLRSGKPLE
        Q+           PQ +  +SLE++M+++MA+ DA IQS  AS+R LE+Q+GQLAN+LK RPQG L SDTE+PRR+ KE  KAVTLRSGK +E
Subjt:  QAL----------PQQNSGNSLEAMMKEFMARTDAAIQSNQASMRALELQVGQLANELKARPQGKLLSDTEHPRREGKEQVKAVTLRSGKPLE

TrEMBL top hitse value%identityAlignment
A0A5B6VWJ0 Retroelement pol polyprotein-like3.7e-4439.39Show/hide
Query:  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAKTFNEAYEILERISTNSCQWSDVR-GTNKKVKSVLEVDGVS
        F  ++DE+  EAWERFKELL+KCPHHG+PHCIQ++TFYNGL A T+ +VDASA GALL+K++NEAYEI+ERI++N+ QW   R  + ++V  + EVD ++
Subjt:  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAKTFNEAYEILERISTNSCQWSDVR-GTNKKVKSVLEVDGVS

Query:  TIRADLAMIANALKNVTVISHQ----QPP---------------------------------------------------------------------VV
        ++ + ++ I++  KN+T         QPP                                                                       
Subjt:  TIRADLAMIANALKNVTVISHQ----QPP---------------------------------------------------------------------VV

Query:  EPAAVVLPQ--QNKQALPQQNSGNSLEAMMKEFMARTDAAIQSNQASMRALELQVGQLANELKARPQGKLLSDTEHPRREGKEQVKAVTLRSGKPLE
        +P    LP   Q  Q L Q  + NSLE+++K +MA+ DA IQS  A+++ LE QVGQLA EL+ R QG L SDTE+PR  GKE  KA+TLRS K +E
Subjt:  EPAAVVLPQ--QNKQALPQQNSGNSLEAMMKEFMARTDAAIQSNQASMRALELQVGQLANELKARPQGKLLSDTEHPRREGKEQVKAVTLRSGKPLE

A0A6J1EEI2 uncharacterized protein LOC1114333943.6e-3966.1Show/hide
Query:  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAKTFNEAYEILERISTNSCQWSDVRGT-NKKVKSVLEVDGVS
        F+Q ED+T SEAWERFKE+LRKCPHHGLPHCIQM+TFYNGLN  T+ +VDASA GA+L+KT+NEAYEILERI++N+CQW+DVR    +K + VLEVD +S
Subjt:  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAKTFNEAYEILERISTNSCQWSDVRGT-NKKVKSVLEVDGVS

Query:  TIRADLAMIANALKNVTV
        +I A LA + N L+N+ +
Subjt:  TIRADLAMIANALKNVTV

A0A6J1EQ90 uncharacterized protein LOC1114364111.8e-3836.96Show/hide
Query:  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAKTFNEAYEILERISTNSCQWSDVRGT-NKKVKSVLEVDGVS
        F+Q EDET SEA ERFKE+LRKCPHHGLPHCIQM+TFYNGLN VT+ +VDASA GA+L+KT+NEAYEILERI++N+CQW+DVR    +K + VLEVD +S
Subjt:  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAKTFNEAYEILERISTNSCQWSDVRGT-NKKVKSVLEVDGVS

Query:  TIRADLAMIANALKNV---------------------------------------------------------------------------------TVI
        +I A LA + N L+N+                                                                                 ++ 
Subjt:  TIRADLAMIANALKNV---------------------------------------------------------------------------------TVI

Query:  SHQQPPVVE-PAAVVLPQQNKQALPQQN------------SGNSLEAMMKEFMARTDAAIQSNQASMRALELQVGQLANELKARPQGKLLSDTEHPRREG
        + Q PP    P+   L  Q   +  Q N            S  S+E+++KE+MA+ DA IQS QAS+R LE+Q+G   N  +     +  +DT+    E 
Subjt:  SHQQPPVVE-PAAVVLPQQNKQALPQQN------------SGNSLEAMMKEFMARTDAAIQSNQASMRALELQVGQLANELKARPQGKLLSDTEHPRREG

Query:  KEQ
          Q
Subjt:  KEQ

A0A6J1G7Q6 uncharacterized protein LOC1114515981.4e-4642.38Show/hide
Query:  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAKTFNEAYEILERISTNSCQWSDVRGT-NKKVKSVLEVDGVS
        F++ E+ET SEAWERFKE LRKCPHHGLPHCIQ++TFYNGLN  T+ +VDASA G +L+KT+NEAYEILERI++N+CQW DVR    KK + VLEVD +S
Subjt:  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAKTFNEAYEILERISTNSCQWSDVRGT-NKKVKSVLEVDGVS

Query:  TIRADLAMIANALKNV---------------TVI------------------------------------------------------------------
        +I A LA + N L+N+               TV+                                                                  
Subjt:  TIRADLAMIANALKNV---------------TVI------------------------------------------------------------------

Query:  SHQQPPVVE-PAAVVLPQQ----NKQALPQQN--------SGNSLEAMMKEFMARTDAAIQSNQASMRALELQVGQLANELKARPQGKLLSDTEHPRREG
        + Q PP    P    L  Q    ++QA  Q          SG  LE+++KE+MAR DA IQS Q S+R LE+QVGQLANEL+ RP GKL +DTE P+REG
Subjt:  SHQQPPVVE-PAAVVLPQQ----NKQALPQQN--------SGNSLEAMMKEFMARTDAAIQSNQASMRALELQVGQLANELKARPQGKLLSDTEHPRREG

Query:  KE
         E
Subjt:  KE

A0A6J1H7E4 uncharacterized protein LOC1114611687.3e-4068.97Show/hide
Query:  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAKTFNEAYEILERISTNSCQWSDVRGT-NKKVKSVLEVDGVS
        F+Q EDET SEAWERFKE+LRKCPHHGLPHCIQM+TFYNGLN  T+ +VDASA GA+L+KT+NEAYEILERI++N+CQW+DVR    KK + VLEVD +S
Subjt:  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAKTFNEAYEILERISTNSCQWSDVRGT-NKKVKSVLEVDGVS

Query:  TIRADLAMIANALKNV
        +I A LA + N L+N+
Subjt:  TIRADLAMIANALKNV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGATCCGCCTAGGGTGAGGTTCGAGCTTGATCCAGAAATCGAGAGGACATTCAGGATAAGAAGGAGAGAGCAGCGTAGACAGCAAAATCAAATGGCTGACGTGCC
GCATCTACCGCAGGGTCCTGAAGGGTTTAGGCAACTTGAAGATGAGACTTTTAGTGAGGCTTGGGAGAGGTTTAAGGAGCTTTTGCGAAAGTGTCCCCACCATGGCTTAC
CACATTGTATCCAAATGCAAACATTTTACAATGGATTAAACGCGGTAACTCAAGGTATGGTTGATGCTTCGGCTGGAGGGGCCCTTTTGGCAAAAACTTTTAACGAAGCC
TATGAAATTTTAGAAAGAATATCTACTAATAGTTGTCAGTGGTCGGATGTTAGAGGCACAAATAAAAAGGTTAAGAGTGTATTAGAAGTTGATGGTGTGTCCACCATTAG
GGCTGATCTTGCAATGATTGCTAACGCTCTTAAGAATGTGACAGTGATTAGTCATCAACAGCCGCCAGTTGTGGAGCCTGCTGCAGTGGTATTGCCCCAGCAAAATAAGC
AGGCTTTGCCCCAGCAGAATTCGGGGAATTCTCTCGAGGCAATGATGAAAGAATTTATGGCTCGTACAGACGCCGCAATTCAAAGTAATCAAGCTTCAATGAGAGCCCTT
GAATTGCAAGTGGGACAGCTAGCCAATGAGCTGAAGGCAAGGCCTCAAGGGAAACTTCTTTCAGATACTGAACACCCAAGAAGGGAAGGTAAGGAGCAGGTAAAGGCAGT
GACTCTTAGGAGTGGTAAGCCACTAGAAGAAAGAAAAGGGCCTAGTAAAACCCAGGATACAGATGGTAATTGTGATAGAAATGTTGTTGTTGAGAAAGAGTTGGAGTCTG
GTCAGGGTGCTGGAGGCAGCAATAAAGATGCTGGAGCATCTGGAAATTGCATGAGGAATTACGATGCTGCCACGTGTCACGCAGAGGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCGATCCGCCTAGGGTGAGGTTCGAGCTTGATCCAGAAATCGAGAGGACATTCAGGATAAGAAGGAGAGAGCAGCGTAGACAGCAAAATCAAATGGCTGACGTGCC
GCATCTACCGCAGGGTCCTGAAGGGTTTAGGCAACTTGAAGATGAGACTTTTAGTGAGGCTTGGGAGAGGTTTAAGGAGCTTTTGCGAAAGTGTCCCCACCATGGCTTAC
CACATTGTATCCAAATGCAAACATTTTACAATGGATTAAACGCGGTAACTCAAGGTATGGTTGATGCTTCGGCTGGAGGGGCCCTTTTGGCAAAAACTTTTAACGAAGCC
TATGAAATTTTAGAAAGAATATCTACTAATAGTTGTCAGTGGTCGGATGTTAGAGGCACAAATAAAAAGGTTAAGAGTGTATTAGAAGTTGATGGTGTGTCCACCATTAG
GGCTGATCTTGCAATGATTGCTAACGCTCTTAAGAATGTGACAGTGATTAGTCATCAACAGCCGCCAGTTGTGGAGCCTGCTGCAGTGGTATTGCCCCAGCAAAATAAGC
AGGCTTTGCCCCAGCAGAATTCGGGGAATTCTCTCGAGGCAATGATGAAAGAATTTATGGCTCGTACAGACGCCGCAATTCAAAGTAATCAAGCTTCAATGAGAGCCCTT
GAATTGCAAGTGGGACAGCTAGCCAATGAGCTGAAGGCAAGGCCTCAAGGGAAACTTCTTTCAGATACTGAACACCCAAGAAGGGAAGGTAAGGAGCAGGTAAAGGCAGT
GACTCTTAGGAGTGGTAAGCCACTAGAAGAAAGAAAAGGGCCTAGTAAAACCCAGGATACAGATGGTAATTGTGATAGAAATGTTGTTGTTGAGAAAGAGTTGGAGTCTG
GTCAGGGTGCTGGAGGCAGCAATAAAGATGCTGGAGCATCTGGAAATTGCATGAGGAATTACGATGCTGCCACGTGTCACGCAGAGGCTTAA
Protein sequenceShow/hide protein sequence
MSDPPRVRFELDPEIERTFRIRRREQRRQQNQMADVPHLPQGPEGFRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAKTFNEA
YEILERISTNSCQWSDVRGTNKKVKSVLEVDGVSTIRADLAMIANALKNVTVISHQQPPVVEPAAVVLPQQNKQALPQQNSGNSLEAMMKEFMARTDAAIQSNQASMRAL
ELQVGQLANELKARPQGKLLSDTEHPRREGKEQVKAVTLRSGKPLEERKGPSKTQDTDGNCDRNVVVEKELESGQGAGGSNKDAGASGNCMRNYDAATCHAEA