CuGenDBv2

Gene ID	Spg030928
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Cytochrome c biogenesis FC
Genome location	scaffold11:28881756..28883516
RNA-Seq Expression	Spg030928
Synteny	Spg030928
Gene Ontology terms	GO:0017004 - cytochrome complex assembly (biological process) GO:0005739 - mitochondrion (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR044955 - Cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAB8477478.1 hypothetical protein FH972_025344 [Carpinus fangiana]

2.2e-95

93.81

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Query:  RKFIRSMDGAKIGVLVRASHPILLPDIIGRSSSETRARNASFRFVPVLHFLLLSSKGDFSYFESFCGVLCLLFFRTLFSLPRHSSAKRERARRRKGQTLR
        RKFIRSMDGAK GVLVRAS PILLPDIIGRSSSETRARNASFRFVPVLHFLLL SKGDFSY ESFCGVLCLLFFRTLFSLPR  SAKRERARRRKGQTLR
Subjt:  RKFIRSMDGAKIGVLVRASHPILLPDIIGRSSSETRARNASFRFVPVLHFLLLSSKGDFSYFESFCGVLCLLFFRTLFSLPRHSSAKRERARRRKGQTLR

Query:  PNGNEQRRNDKMRCSGHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIRLEALALPTSRQLMVVGHDYYQKAPMKMNISHGGVCIFMLGVLL
        PNGNEQRRNDKMRCSGHPHLERRVEGFGPVAFPV PSSGGACV GV PEI LEALALPTSRQLM VGHDYYQKAPMKMNISHGGVCI MLGVLL
Subjt:  PNGNEQRRNDKMRCSGHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIRLEALALPTSRQLMVVGHDYYQKAPMKMNISHGGVCIFMLGVLL

TKS02628.1 hypothetical protein D5086_0000160290 [Populus alba]

3.3e-104

63.04

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Query:  PARARRENGHDSPSPRSTVQNMSTVRSFGVGSDRTRPNRLDLWN-----PIGSDRSFEF-----------------------------------------
        PARARRENGHDSPS RSTVQN   + S GVGSDRTRPNRLDLWN     PIGSDRSFEF                                         
Subjt:  PARARRENGHDSPSPRSTVQNMSTVRSFGVGSDRTRPNRLDLWN-----PIGSDRSFEF-----------------------------------------

Query:  -------------------------------------------------------RKFIRSMDGAKIGVLVRASHPILLPDIIGRSSSETRARNASFRFV
                                                               RKFIRSMDGAK GVLVRAS PILLPD I RSS ETRARNA FRFV
Subjt:  -------------------------------------------------------RKFIRSMDGAKIGVLVRASHPILLPDIIGRSSSETRARNASFRFV

Query:  PVLHFLLLSSKGDFSYFESFCGVLCLLFFRTLFSLPRHSSAKRERARRRKGQTLRPNGNEQRRNDKMRCSGHPHLERRVEGFGPVAFPVRPSSGGACVWG
        PVLHFLLL SKGDFSY ESFCGVLCLLFFRT FSLPR  SAKRERARRRK QTLRPNGNEQRRNDKMRCSGHPHL+RRVEGFGP+AFPV PSSGGACV G
Subjt:  PVLHFLLLSSKGDFSYFESFCGVLCLLFFRTLFSLPRHSSAKRERARRRKGQTLRPNGNEQRRNDKMRCSGHPHLERRVEGFGPVAFPVRPSSGGACVWG

Query:  VLPEIRLEALALPTSRQLMVVGHDYYQKAPMKMNISHGGVCIFMLGVLL
        V PEI +EALALPTSRQLM VGHDYYQKAPMKMNISHGGVCI MLGVLL
Subjt:  VLPEIRLEALALPTSRQLMVVGHDYYQKAPMKMNISHGGVCIFMLGVLL

YP_003587254.1 cytochrome c biogenesis FC [Citrullus lanatus]

6.7e-97

94.33

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Query:  RKFIRSMDGAKIGVLVRASHPILLPDIIGRSSSETRARNASFRFVPVLHFLLLSSKGDFSYFESFCGVLCLLFFRTLFSLPRHSSAKRERARRRKGQTLR
        RKFIRSMDGAK GVLVRAS PILLPDIIGRSSSETRARNA F FVPVLHFLLL SKGDFSYFESFCGVLCLLFF TLFSLPRHSSAKRERARRRKGQTLR
Subjt:  RKFIRSMDGAKIGVLVRASHPILLPDIIGRSSSETRARNASFRFVPVLHFLLLSSKGDFSYFESFCGVLCLLFFRTLFSLPRHSSAKRERARRRKGQTLR

Query:  PNGNEQRRNDKMRCSGHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIRLEALALPTSRQLMVVGHDYYQKAPMKMNISHGGVCIFMLGVLL
        PNGNEQ  N KMRCSGHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEI LEALALPTSRQLM VGHDYYQKAPMKMNISHGGVCIFMLGVLL
Subjt:  PNGNEQRRNDKMRCSGHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIRLEALALPTSRQLMVVGHDYYQKAPMKMNISHGGVCIFMLGVLL

YP_009526542.1 cytochrome c biogenesis FC [Ammopiptanthus mongolicus]

4.2e-115

72.22

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Query:  MYMSSVFHFDVPARARRENGHDSPSPRSTVQNMSTVRSFGVGSDRTRPNRLDLWNPIGSDRSFEFR----------------------------------
        MYM SVFH DVPARARRENGHDSPSPRS VQNM  V S GVGSDRTRPNRLDLWNPIGSDRSFEFR                                  
Subjt:  MYMSSVFHFDVPARARRENGHDSPSPRSTVQNMSTVRSFGVGSDRTRPNRLDLWNPIGSDRSFEFR----------------------------------

Query:  ---------------------------KFIRSMDGAKIGVLVRASHPILLPDIIGRSSSETRARNASFRFVPVLHFLLLSSKGDFSYFESFCGVLCLLFF
                                   KFIRSMDGAK GVLVRAS PILLPDIIGRSSSETRA NASFRFVPVLHFLLL SKGDFSY ESFCGVLCLLFF
Subjt:  ---------------------------KFIRSMDGAKIGVLVRASHPILLPDIIGRSSSETRARNASFRFVPVLHFLLLSSKGDFSYFESFCGVLCLLFF

Query:  RTLFSLPRHSSAKRERARRRKGQTLR--PNGNEQRRNDKMRCSGHPHLERRVEGFGPVAFPVRPSSGGACVWGV--LPEIRLEALALPTSRQLMVVGHDY
        RTLFSLPR  SAKRERARRRK QTLR  PNGNEQ+RNDKMRCSGHPHLERRVEGFGPVAFPV PSSGGACV GV   PEI LEALALPTSRQLM VGHDY
Subjt:  RTLFSLPRHSSAKRERARRRKGQTLR--PNGNEQRRNDKMRCSGHPHLERRVEGFGPVAFPVRPSSGGACVWGV--LPEIRLEALALPTSRQLMVVGHDY

Query:  YQKAPMKMNISHGGVCIFMLGVLL
        +QKAPMKMNISH GVCI +LGVLL
Subjt:  YQKAPMKMNISHGGVCIFMLGVLL

YP_009913656.1 cytochrome c biogenesis FC [Luffa acutangula]

3.1e-102

97.94

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Query:  RKFIRSMDGAKIGVLVRASHPILLPDIIGRSSSETRARNASFRFVPVLHFLLLSSKGDFSYFESFCGVLCLLFFRTLFSLPRHSSAKRERARRRKGQTLR
        RKFIRSMDGAK GVLVRAS PILLPDIIGRSSSETRARNASFRFVPVLHFLLLSSKGDFSYFESFCGVLCLLFFRTLFSLPRHSSAKRERARRRKGQTLR
Subjt:  RKFIRSMDGAKIGVLVRASHPILLPDIIGRSSSETRARNASFRFVPVLHFLLLSSKGDFSYFESFCGVLCLLFFRTLFSLPRHSSAKRERARRRKGQTLR

Query:  PNGNEQRRNDKMRCSGHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIRLEALALPTSRQLMVVGHDYYQKAPMKMNISHGGVCIFMLGVLL
        PNGNEQRRNDKMRCSGHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEI LEALALPTSRQLM VGHDYYQKAPMKMNISHGGVCIFMLGVLL
Subjt:  PNGNEQRRNDKMRCSGHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIRLEALALPTSRQLMVVGHDYYQKAPMKMNISHGGVCIFMLGVLL

TrEMBL top hits

e value

%identity

Alignment

A0A385G289 Cytochrome c biogenesis FC

2.0e-115

72.22

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Query:  MYMSSVFHFDVPARARRENGHDSPSPRSTVQNMSTVRSFGVGSDRTRPNRLDLWNPIGSDRSFEFR----------------------------------
        MYM SVFH DVPARARRENGHDSPSPRS VQNM  V S GVGSDRTRPNRLDLWNPIGSDRSFEFR                                  
Subjt:  MYMSSVFHFDVPARARRENGHDSPSPRSTVQNMSTVRSFGVGSDRTRPNRLDLWNPIGSDRSFEFR----------------------------------

Query:  ---------------------------KFIRSMDGAKIGVLVRASHPILLPDIIGRSSSETRARNASFRFVPVLHFLLLSSKGDFSYFESFCGVLCLLFF
                                   KFIRSMDGAK GVLVRAS PILLPDIIGRSSSETRA NASFRFVPVLHFLLL SKGDFSY ESFCGVLCLLFF
Subjt:  ---------------------------KFIRSMDGAKIGVLVRASHPILLPDIIGRSSSETRARNASFRFVPVLHFLLLSSKGDFSYFESFCGVLCLLFF

Query:  RTLFSLPRHSSAKRERARRRKGQTLR--PNGNEQRRNDKMRCSGHPHLERRVEGFGPVAFPVRPSSGGACVWGV--LPEIRLEALALPTSRQLMVVGHDY
        RTLFSLPR  SAKRERARRRK QTLR  PNGNEQ+RNDKMRCSGHPHLERRVEGFGPVAFPV PSSGGACV GV   PEI LEALALPTSRQLM VGHDY
Subjt:  RTLFSLPRHSSAKRERARRRKGQTLR--PNGNEQRRNDKMRCSGHPHLERRVEGFGPVAFPVRPSSGGACVWGV--LPEIRLEALALPTSRQLMVVGHDY

Query:  YQKAPMKMNISHGGVCIFMLGVLL
        +QKAPMKMNISH GVCI +LGVLL
Subjt:  YQKAPMKMNISHGGVCIFMLGVLL

A0A4U5PYC8 Uncharacterized protein

1.6e-104

63.04

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Query:  PARARRENGHDSPSPRSTVQNMSTVRSFGVGSDRTRPNRLDLWN-----PIGSDRSFEF-----------------------------------------
        PARARRENGHDSPS RSTVQN   + S GVGSDRTRPNRLDLWN     PIGSDRSFEF                                         
Subjt:  PARARRENGHDSPSPRSTVQNMSTVRSFGVGSDRTRPNRLDLWN-----PIGSDRSFEF-----------------------------------------

Query:  -------------------------------------------------------RKFIRSMDGAKIGVLVRASHPILLPDIIGRSSSETRARNASFRFV
                                                               RKFIRSMDGAK GVLVRAS PILLPD I RSS ETRARNA FRFV
Subjt:  -------------------------------------------------------RKFIRSMDGAKIGVLVRASHPILLPDIIGRSSSETRARNASFRFV

Query:  PVLHFLLLSSKGDFSYFESFCGVLCLLFFRTLFSLPRHSSAKRERARRRKGQTLRPNGNEQRRNDKMRCSGHPHLERRVEGFGPVAFPVRPSSGGACVWG
        PVLHFLLL SKGDFSY ESFCGVLCLLFFRT FSLPR  SAKRERARRRK QTLRPNGNEQRRNDKMRCSGHPHL+RRVEGFGP+AFPV PSSGGACV G
Subjt:  PVLHFLLLSSKGDFSYFESFCGVLCLLFFRTLFSLPRHSSAKRERARRRKGQTLRPNGNEQRRNDKMRCSGHPHLERRVEGFGPVAFPVRPSSGGACVWG

Query:  VLPEIRLEALALPTSRQLMVVGHDYYQKAPMKMNISHGGVCIFMLGVLL
        V PEI +EALALPTSRQLM VGHDYYQKAPMKMNISHGGVCI MLGVLL
Subjt:  VLPEIRLEALALPTSRQLMVVGHDYYQKAPMKMNISHGGVCIFMLGVLL

A0A5N6L146 CcmF_C domain-containing protein

1.0e-95

93.81

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Query:  RKFIRSMDGAKIGVLVRASHPILLPDIIGRSSSETRARNASFRFVPVLHFLLLSSKGDFSYFESFCGVLCLLFFRTLFSLPRHSSAKRERARRRKGQTLR
        RKFIRSMDGAK GVLVRAS PILLPDIIGRSSSETRARNASFRFVPVLHFLLL SKGDFSY ESFCGVLCLLFFRTLFSLPR  SAKRERARRRKGQTLR
Subjt:  RKFIRSMDGAKIGVLVRASHPILLPDIIGRSSSETRARNASFRFVPVLHFLLLSSKGDFSYFESFCGVLCLLFFRTLFSLPRHSSAKRERARRRKGQTLR

Query:  PNGNEQRRNDKMRCSGHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIRLEALALPTSRQLMVVGHDYYQKAPMKMNISHGGVCIFMLGVLL
        PNGNEQRRNDKMRCSGHPHLERRVEGFGPVAFPV PSSGGACV GV PEI LEALALPTSRQLM VGHDYYQKAPMKMNISHGGVCI MLGVLL
Subjt:  PNGNEQRRNDKMRCSGHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIRLEALALPTSRQLMVVGHDYYQKAPMKMNISHGGVCIFMLGVLL

A0A7D6C5F1 Cytochrome c biogenesis FC

1.5e-102

97.94

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Query:  RKFIRSMDGAKIGVLVRASHPILLPDIIGRSSSETRARNASFRFVPVLHFLLLSSKGDFSYFESFCGVLCLLFFRTLFSLPRHSSAKRERARRRKGQTLR
        RKFIRSMDGAK GVLVRAS PILLPDIIGRSSSETRARNASFRFVPVLHFLLLSSKGDFSYFESFCGVLCLLFFRTLFSLPRHSSAKRERARRRKGQTLR
Subjt:  RKFIRSMDGAKIGVLVRASHPILLPDIIGRSSSETRARNASFRFVPVLHFLLLSSKGDFSYFESFCGVLCLLFFRTLFSLPRHSSAKRERARRRKGQTLR

Query:  PNGNEQRRNDKMRCSGHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIRLEALALPTSRQLMVVGHDYYQKAPMKMNISHGGVCIFMLGVLL
        PNGNEQRRNDKMRCSGHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEI LEALALPTSRQLM VGHDYYQKAPMKMNISHGGVCIFMLGVLL
Subjt:  PNGNEQRRNDKMRCSGHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIRLEALALPTSRQLMVVGHDYYQKAPMKMNISHGGVCIFMLGVLL

D5I3C4 Cytochrome c biogenesis FC

3.2e-97

94.33

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Query:  RKFIRSMDGAKIGVLVRASHPILLPDIIGRSSSETRARNASFRFVPVLHFLLLSSKGDFSYFESFCGVLCLLFFRTLFSLPRHSSAKRERARRRKGQTLR
        RKFIRSMDGAK GVLVRAS PILLPDIIGRSSSETRARNA F FVPVLHFLLL SKGDFSYFESFCGVLCLLFF TLFSLPRHSSAKRERARRRKGQTLR
Subjt:  RKFIRSMDGAKIGVLVRASHPILLPDIIGRSSSETRARNASFRFVPVLHFLLLSSKGDFSYFESFCGVLCLLFFRTLFSLPRHSSAKRERARRRKGQTLR

Query:  PNGNEQRRNDKMRCSGHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIRLEALALPTSRQLMVVGHDYYQKAPMKMNISHGGVCIFMLGVLL
        PNGNEQ  N KMRCSGHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEI LEALALPTSRQLM VGHDYYQKAPMKMNISHGGVCIFMLGVLL
Subjt:  PNGNEQRRNDKMRCSGHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIRLEALALPTSRQLMVVGHDYYQKAPMKMNISHGGVCIFMLGVLL

SwissProt top hits

e value

%identity

Alignment

P38451 Uncharacterized mitochondrial protein ymf2

7.1e-09

39.13

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Query:  GDFSYFESFCGVLCLLFFRTLFSLPRHSSAKRERARRRKGQTLRPNGNEQRRNDKMRCSGHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIRLEALA
        GDFSY ESFCGVLC  FF T F    H   +R+   R K        ++QRR + +  S      RR        F VR                    A
Subjt:  GDFSYFESFCGVLCLLFFRTLFSLPRHSSAKRERARRRKGQTLRPNGNEQRRNDKMRCSGHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIRLEALA

Query:  LPTSRQLMVVGHDYYQKAPMKMNISHGGVCIFMLGVLL
        LP+  +L+ VGHD ++KAP+ M ISHGGVCIF++GV+L
Subjt:  LPTSRQLMVVGHDYYQKAPMKMNISHGGVCIFMLGVLL

P93286 Cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein

5.5e-86

84.85

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Query:  RKFIRSMDGAKIGVLVRASHPILLPDIIGRSSSETRARNASFRFVPVLHFLLLSSKGDFSYFESFCGVLCLLFFRTLFSLPRHSSAKRERARRRKGQTLR
        RK IRSMDGAK GVLVRAS PILLPDIIGRSSSETRAR A F FVPVLHF LL SKGDFSY ESFCGVLCLLFF T F L R  SAKRERARRRKGQTLR
Subjt:  RKFIRSMDGAKIGVLVRASHPILLPDIIGRSSSETRARNASFRFVPVLHFLLLSSKGDFSYFESFCGVLCLLFFRTLFSLPRHSSAKRERARRRKGQTLR

Query:  PNGNEQRRNDKMRCSGHPH--LERRVEGFGPVAFPVRPSSGGACVWGVLPEIRLEALALPTSRQL--MVVGHDYYQKAPMKMNISHGGVCIFMLGVLL
        PNGNEQRRNDKMRCSGHPH  LERRVEGFGP+AFPV P  GGACV GV PEI LEALALP SRQL  M VGHDYYQK PMKMNISHGGVCI MLGVLL
Subjt:  PNGNEQRRNDKMRCSGHPH--LERRVEGFGPVAFPVRPSSGGACVWGVLPEIRLEALALPTSRQL--MVVGHDYYQKAPMKMNISHGGVCIFMLGVLL

Arabidopsis top hits

e value

%identity

Alignment

ATMG00180.1 cytochrome C biogenesis 452

3.0e-87

84.85

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Query:  RKFIRSMDGAKIGVLVRASHPILLPDIIGRSSSETRARNASFRFVPVLHFLLLSSKGDFSYFESFCGVLCLLFFRTLFSLPRHSSAKRERARRRKGQTLR
        RK IRSMDGAK GVLVRAS PILLPDIIGRSSSETRAR A F FVPVLHF LL SKGDFSY ESFCGVLCLLFFRT   L R  SAKRERARRRKGQTLR
Subjt:  RKFIRSMDGAKIGVLVRASHPILLPDIIGRSSSETRARNASFRFVPVLHFLLLSSKGDFSYFESFCGVLCLLFFRTLFSLPRHSSAKRERARRRKGQTLR

Query:  PNGNEQRRNDKMRCSGHPH--LERRVEGFGPVAFPVRPSSGGACVWGVLPEIRLEALALPTSRQL--MVVGHDYYQKAPMKMNISHGGVCIFMLGVLL
        PNGNEQRRNDKMRCSGHPH  LERRVEGFGP+AFPV P  GGACV GV PEI LEALALP SRQL  M VGHDYYQK PMKMNISHGGVCI MLGVLL
Subjt:  PNGNEQRRNDKMRCSGHPH--LERRVEGFGPVAFPVRPSSGGACVWGVLPEIRLEALALPTSRQL--MVVGHDYYQKAPMKMNISHGGVCIFMLGVLL

Sequences

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CDS sequence

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ATGTACATGTCTTCGGTCTTTCATTTTGATGTTCCTGCTCGTGCCCGGAGAGAGAATGGGCACGACTCCCCCTCTCCCCGTTCTACCGTCCAAAACATGTCAACCGTTCG
AAGTTTTGGGGTTGGGTCGGATAGGACCAGACCCAATCGACTGGATCTGTGGAATCCAATCGGATCTGATCGTAGCTTCGAGTTCAGGAAATTCATACGCTCCATGGACG
GAGCAAAAATTGGAGTCTTGGTCAGAGCAAGCCACCCTATTCTATTACCAGACATAATTGGGAGAAGCTCATCCGAAACTCGAGCTAGAAACGCCTCATTTCGTTTCGTT
CCCGTTCTTCATTTCCTTCTTCTTTCATCCAAGGGAGACTTCTCATATTTTGAATCTTTCTGTGGTGTGCTCTGTTTACTATTCTTTCGTACTCTCTTCTCTTTACCACG
CCATAGTTCAGCGAAGCGTGAGCGGGCGCGGAGAAGGAAAGGCCAAACACTCAGGCCTAACGGGAATGAGCAACGGCGAAATGACAAGATGAGATGCTCCGGGCACCCCC
ATTTAGAAAGAAGGGTCGAAGGTTTTGGGCCTGTAGCTTTCCCCGTCCGCCCTTCGTCGGGTGGTGCTTGTGTGTGGGGTGTGCTACCAGAAATCAGGCTTGAAGCTCTC
GCCTTACCAACGAGCCGACAACTGATGGTTGTTGGTCACGACTACTACCAAAAAGCTCCAATGAAGATGAATATTTCACATGGAGGAGTGTGCATCTTTATGTTGGGTGT
TCTTCTTGAAGGATTGGAATTCCCAATTCCGTTTCAACGGCAGCAATTGGACCGTTCGTAA

mRNA sequence

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Protein sequence

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MYMSSVFHFDVPARARRENGHDSPSPRSTVQNMSTVRSFGVGSDRTRPNRLDLWNPIGSDRSFEFRKFIRSMDGAKIGVLVRASHPILLPDIIGRSSSETRARNASFRFV
PVLHFLLLSSKGDFSYFESFCGVLCLLFFRTLFSLPRHSSAKRERARRRKGQTLRPNGNEQRRNDKMRCSGHPHLERRVEGFGPVAFPVRPSSGGACVWGVLPEIRLEAL
ALPTSRQLMVVGHDYYQKAPMKMNISHGGVCIFMLGVLLEGLEFPIPFQRQQLDRS

Spg030928 (gene) of Sponge gourd (cylindrica) v1 genome