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Spg030930 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030930
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPH_TFIIH domain-containing protein
Genome locationscaffold11:24307489..24310529
RNA-Seq ExpressionSpg030930
SyntenySpg030930
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597731.1 General transcription and DNA repair factor IIH subunit TFB1-1, partial [Cucurbita argyrosperma subsp. sororia]3.0e-1055.41Show/hide
Query:  GVDPCPKANGWKSWNFWKFWTALAFIGFWLFMVFL-----MPPDNWKMGTKYVQKSAKYKTSVKDPGTPGVLEM
        G  PCPKANG+  W     W  + F    +  +F+     +    WKMGTKYVQKSAKYKTSVKDPGTPGVLEM
Subjt:  GVDPCPKANGWKSWNFWKFWTALAFIGFWLFMVFL-----MPPDNWKMGTKYVQKSAKYKTSVKDPGTPGVLEM

KAG7029183.1 putative RNA polymerase II transcription factor B subunit 1-1 [Cucurbita argyrosperma subsp. argyrosperma]2.9e-05100Show/hide
Query:  MGTKYVQKSAKYKTSVKDPGTPGVLEM
        MGTKYVQKSAKYKTSVKDPGTPGVLEM
Subjt:  MGTKYVQKSAKYKTSVKDPGTPGVLEM

XP_022155949.1 probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Momordica charantia]2.9e-05100Show/hide
Query:  MGTKYVQKSAKYKTSVKDPGTPGVLEM
        MGTKYVQKSAKYKTSVKDPGTPGVLEM
Subjt:  MGTKYVQKSAKYKTSVKDPGTPGVLEM

XP_022155950.1 probable RNA polymerase II transcription factor B subunit 1-1 isoform X2 [Momordica charantia]2.9e-05100Show/hide
Query:  MGTKYVQKSAKYKTSVKDPGTPGVLEM
        MGTKYVQKSAKYKTSVKDPGTPGVLEM
Subjt:  MGTKYVQKSAKYKTSVKDPGTPGVLEM

XP_023539702.1 probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Cucurbita pepo subsp. pepo]2.9e-05100Show/hide
Query:  MGTKYVQKSAKYKTSVKDPGTPGVLEM
        MGTKYVQKSAKYKTSVKDPGTPGVLEM
Subjt:  MGTKYVQKSAKYKTSVKDPGTPGVLEM

TrEMBL top hitse value%identityAlignment
A0A0A0KYD2 PH_TFIIH domain-containing protein3.2e-0592.86Show/hide
Query:  KMGTKYVQKSAKYKTSVKDPGTPGVLEM
        +MGTKYV KSAKYKTSVKDPGTPGVLEM
Subjt:  KMGTKYVQKSAKYKTSVKDPGTPGVLEM

A0A6J1DNY2 probable RNA polymerase II transcription factor B subunit 1-1 isoform X21.4e-05100Show/hide
Query:  MGTKYVQKSAKYKTSVKDPGTPGVLEM
        MGTKYVQKSAKYKTSVKDPGTPGVLEM
Subjt:  MGTKYVQKSAKYKTSVKDPGTPGVLEM

A0A6J1DRT9 probable RNA polymerase II transcription factor B subunit 1-1 isoform X11.4e-05100Show/hide
Query:  MGTKYVQKSAKYKTSVKDPGTPGVLEM
        MGTKYVQKSAKYKTSVKDPGTPGVLEM
Subjt:  MGTKYVQKSAKYKTSVKDPGTPGVLEM

A0A6J1EXP7 probable RNA polymerase II transcription factor B subunit 1-11.4e-05100Show/hide
Query:  MGTKYVQKSAKYKTSVKDPGTPGVLEM
        MGTKYVQKSAKYKTSVKDPGTPGVLEM
Subjt:  MGTKYVQKSAKYKTSVKDPGTPGVLEM

A0A6J1IB04 probable RNA polymerase II transcription factor B subunit 1-11.4e-05100Show/hide
Query:  MGTKYVQKSAKYKTSVKDPGTPGVLEM
        MGTKYVQKSAKYKTSVKDPGTPGVLEM
Subjt:  MGTKYVQKSAKYKTSVKDPGTPGVLEM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGAACCAGAAGGAACAGTGGTGGGACTTGGAAGAAGTTCAAATTGGTTGCTCGATTTCGTTCGGGAGTACGGTTCCGGGAGTTGATCCTTGTCCGAAGGCTAA
TGGCTGGAAATCTTGGAATTTCTGGAAATTTTGGACTGCCCTTGCTTTTATTGGGTTCTGGTTGTTTATGGTGTTTTTAATGCCACCAGATAATTGGAAGATGGGAACCA
AGTATGTCCAGAAGAGTGCTAAGTACAAGACTTCAGTTAAGGATCCTGGCACGCCTGGCGTTTTGGAAATGGTACATGAGCTGGGTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAGAACCAGAAGGAACAGTGGTGGGACTTGGAAGAAGTTCAAATTGGTTGCTCGATTTCGTTCGGGAGTACGGTTCCGGGAGTTGATCCTTGTCCGAAGGCTAA
TGGCTGGAAATCTTGGAATTTCTGGAAATTTTGGACTGCCCTTGCTTTTATTGGGTTCTGGTTGTTTATGGTGTTTTTAATGCCACCAGATAATTGGAAGATGGGAACCA
AGTATGTCCAGAAGAGTGCTAAGTACAAGACTTCAGTTAAGGATCCTGGCACGCCTGGCGTTTTGGAAATGGTACATGAGCTGGGTGAATGA
Protein sequenceShow/hide protein sequence
MKKNQKEQWWDLEEVQIGCSISFGSTVPGVDPCPKANGWKSWNFWKFWTALAFIGFWLFMVFLMPPDNWKMGTKYVQKSAKYKTSVKDPGTPGVLEMVHELGE