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Spg030958 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030958
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionThreonyl-tRNA synthetase
Genome locationscaffold11:27284076..27286441
RNA-Seq ExpressionSpg030958
SyntenySpg030958
Gene Ontology termsGO:0006435 - threonyl-tRNA aminoacylation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0004829 - threonine-tRNA ligase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR002320 - Threonine-tRNA ligase, class IIa
IPR018163 - Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7029174.1 Threonine--tRNA ligase, mitochondrial 1 [Cucurbita argyrosperma subsp. argyrosperma]1.7e-2296.67Show/hide
Query:  EGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFKAIEY
        EGFYYDAFYDDL LNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFKAI Y
Subjt:  EGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFKAIEY

KAG7032420.1 Threonine--tRNA ligase, mitochondrial 1, partial [Cucurbita argyrosperma subsp. argyrosperma]3.5e-2385.07Show/hide
Query:  GFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFKAIEYHSKDLQFI
        GFYYD FYDDLGLNDDHFKQIESGALKAVSE+QPFERIEV+RQQALEMFSDNKFKAIEY   +  F+
Subjt:  GFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFKAIEYHSKDLQFI

XP_004142299.1 threonine--tRNA ligase, mitochondrial 1 [Cucumis sativus]1.9e-2196.43Show/hide
Query:  EGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK
        EGFYYDAFYDDLGLNDDHFKQIESGALKAVSE+QPFERIEV+RQQALEMFSDNKFK
Subjt:  EGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK

XP_023527929.1 threonine--tRNA ligase, mitochondrial 1-like, partial [Cucurbita pepo subsp. pepo]1.1e-2198.21Show/hide
Query:  EGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK
        EGFYYDAFYDDLGLNDDHFK+IESGALKAVSERQPFERIEVSRQQALEMFSDNKFK
Subjt:  EGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK

XP_038891995.1 threonine--tRNA ligase, mitochondrial 1 [Benincasa hispida]1.9e-2196.43Show/hide
Query:  EGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK
        EGFYYDAFYDDLGLNDDHFKQIESGALKAVSE+QPFERIEV+RQQALEMFSDNKFK
Subjt:  EGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK

TrEMBL top hitse value%identityAlignment
A0A0A0KJG3 Uncharacterized protein9.2e-2296.43Show/hide
Query:  EGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK
        EGFYYDAFYDDLGLNDDHFKQIESGALKAVSE+QPFERIEV+RQQALEMFSDNKFK
Subjt:  EGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK

A0A6J1DER8 Threonyl-tRNA synthetase2.7e-2194.64Show/hide
Query:  EGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK
        EGFYYD FYDDLGLNDDHFKQIESGALKAVSE+QPFERIEV+RQQALEMFSDNKFK
Subjt:  EGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK

A0A6J1DG60 Threonyl-tRNA synthetase2.7e-2194.64Show/hide
Query:  EGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK
        EGFYYD FYDDLGLNDDHFKQIESGALKAVSE+QPFERIEV+RQQALEMFSDNKFK
Subjt:  EGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK

A0A6J1DR46 Threonyl-tRNA synthetase9.2e-2296.43Show/hide
Query:  EGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK
        EGFYYDAFYDDLGLNDDHFKQIESGALKAVSE+QPFERIEV+RQQALEMFSDNKFK
Subjt:  EGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK

A0A6J1F237 Threonyl-tRNA synthetase2.1e-2198.21Show/hide
Query:  EGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK
        EGFYYDAFYDDL LNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK
Subjt:  EGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK

SwissProt top hitse value%identityAlignment
O04630 Threonine--tRNA ligase, mitochondrial 15.6e-1669.64Show/hide
Query:  EGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK
        EGFYYD FY +LGL+D+HF  IE+GA KA  E QPFERIEV++ QALEMFS+N FK
Subjt:  EGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK

Q0V9S0 Threonine--tRNA ligase 2, cytoplasmic9.6e-0845.61Show/hide
Query:  KEGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK
        + GFYYD + D  G++ + F  +E+     + E+QPFER+EVS+   LEMF  NKFK
Subjt:  KEGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK

Q3ZBV8 Threonine--tRNA ligase 1, cytoplasmic6.2e-0742.11Show/hide
Query:  KEGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK
        + GFYYD + ++ G++ + F  +E+   K + E+Q FER+EV ++  LEMF  NKFK
Subjt:  KEGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK

Q5XHY5 Threonine--tRNA ligase 1, cytoplasmic6.2e-0742.11Show/hide
Query:  KEGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK
        + GFYYD + ++ G++ + F  +E+   K + E+Q FER+EV ++  LEMF  NKFK
Subjt:  KEGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK

Q9D0R2 Threonine--tRNA ligase 1, cytoplasmic6.2e-0742.11Show/hide
Query:  KEGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK
        + GFYYD + ++ G++ + F  +E+   K + E+Q FER+EV ++  LEMF  NKFK
Subjt:  KEGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK

Arabidopsis top hitse value%identityAlignment
AT5G26830.1 Threonyl-tRNA synthetase4.0e-1769.64Show/hide
Query:  EGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK
        EGFYYD FY +LGL+D+HF  IE+GA KA  E QPFERIEV++ QALEMFS+N FK
Subjt:  EGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCAAGACGAGGTGGTTGTGAAGTGCCTGAAGGCTTACGACTATGCTGAACAAAAGGAGGGATTCTATTACGATGCTTTTTATGATGATTTGGGCTTAAATGATGA
TCACTTCAAGCAAATTGAGTCTGGTGCACTGAAGGCTGTATCGGAGAGACAACCTTTTGAGCGCATTGAAGTTTCAAGGCAACAAGCTCTTGAAATGTTTTCTGACAATA
AATTCAAGGCAATTGAATATCACTCAAAAGATTTGCAGTTCATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCAAGACGAGGTGGTTGTGAAGTGCCTGAAGGCTTACGACTATGCTGAACAAAAGGAGGGATTCTATTACGATGCTTTTTATGATGATTTGGGCTTAAATGATGA
TCACTTCAAGCAAATTGAGTCTGGTGCACTGAAGGCTGTATCGGAGAGACAACCTTTTGAGCGCATTGAAGTTTCAAGGCAACAAGCTCTTGAAATGTTTTCTGACAATA
AATTCAAGGCAATTGAATATCACTCAAAAGATTTGCAGTTCATTTGA
Protein sequenceShow/hide protein sequence
MPQDEVVVKCLKAYDYAEQKEGFYYDAFYDDLGLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFKAIEYHSKDLQFI