; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg030980 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030980
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold10:22001122..22005729
RNA-Seq ExpressionSpg030980
SyntenySpg030980
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]9.6e-0786.49Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSS
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSS

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]6.2e-0665.45Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSS
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+S
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSS

TYK11693.1 gag protease polyprotein [Cucumis melo var. makuwa]4.0e-0562.5Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSR
        +TEILS RLYGTVCTQ                 VEIELPVPDTLPTSAESS+S+SR
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSR

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]2.0e-0462.5Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSR
        MTEILS RLYGTVCTQ                 VEIELPV DTLPTSAESS S+SR
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSR

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]6.2e-0665.45Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSS
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+S
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSS

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein4.6e-0786.49Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSS
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSS

A0A5A7VMG9 Reverse transcriptase3.0e-0665.45Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSS
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+S
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSS

A0A5D3CIF4 Gag protease polyprotein1.9e-0562.5Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSR
        +TEILS RLYGTVCTQ                 VEIELPVPDTLPTSAESS+S+SR
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSR

A0A5D3CU23 Retrotrans_gag domain-containing protein9.6e-0562.5Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSR
        MTEILS RLYGTVCTQ                 VEIELPV DTLPTSAESS S+SR
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSR

A0A5D3DX39 Reverse transcriptase3.0e-0665.45Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSS
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+S
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACATTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGACTTCAAACCCCAAAGGAAGTTAGTGAGGTGGGATCCACTTCCATAGGTTGTCTAGTGAGTCATGTGGCCACTAATTCATTAGCACCCATCCAGGAGCTTAATT
CTTTCGATATTGCTAAGGTTGAGCATTTAGGGATTATGATTGTTCTTTTTTCTATTCTCACGAGAGTTCCCGTGTTCTTGTCTTTGCCAAGCATTCATGAAAAGATTTTA
GCCCTAATTTCGACTAGAGACCTTCTGTGGGAGCTGAAGCAAGGCCAAGGAGTGGGAACCAAGCTTGAAGACGTGGAGATCGTGACGGGGATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACATTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGACTTCAAACCCCAAAGGAAGTTAGTGAGGTGGGATCCACTTCCATAGGTTGTCTAGTGAGTCATGTGGCCACTAATTCATTAGCACCCATCCAGGAGCTTAATT
CTTTCGATATTGCTAAGGTTGAGCATTTAGGGATTATGATTGTTCTTTTTTCTATTCTCACGAGAGTTCCCGTGTTCTTGTCTTTGCCAAGCATTCATGAAAAGATTTTA
GCCCTAATTTCGACTAGAGACCTTCTGTGGGAGCTGAAGCAAGGCCAAGGAGTGGGAACCAAGCTTGAAGACGTGGAGATCGTGACGGGGATGTGA
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSRLQTPKEVSEVGSTSIGCLVSHVATNSLAPIQELNSFDIAKVEHLGIMIVLFSILTRVPVFLSLPSIHEKIL
ALISTRDLLWELKQGQGVGTKLEDVEIVTGM