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Spg030981 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030981
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold10:22870085..22873275
RNA-Seq ExpressionSpg030981
SyntenySpg030981
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031665.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.5e-0854.32Show/hide
Query:  MCIQGMHWELLYILQGIKSRTFEELATHTHDMELNDQPQRKIDNLEVKLFDEVSSDKK----LQSIVPSRMKRKFSVLINT
        MC QGMHW LLYILQGIK RTFEELAT  HDMEL+  P R   +  V    EV  DKK     + +V S MK   S+++NT
Subjt:  MCIQGMHWELLYILQGIKSRTFEELATHTHDMELNDQPQRKIDNLEVKLFDEVSSDKK----LQSIVPSRMKRKFSVLINT

KAA0057875.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.2e-0888.57Show/hide
Query:  MCIQGMHWELLYILQGIKSRTFEELATHTHDMELN
        MC QGMHWELLYILQGIK RTFEELAT THDMEL+
Subjt:  MCIQGMHWELLYILQGIKSRTFEELATHTHDMELN

TYK11760.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.2e-0888.57Show/hide
Query:  MCIQGMHWELLYILQGIKSRTFEELATHTHDMELN
        MC QGMHWELLYILQGIK RTFEELAT THDMEL+
Subjt:  MCIQGMHWELLYILQGIKSRTFEELATHTHDMELN

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]2.5e-0849.43Show/hide
Query:  MCIQGMHWELLYILQGIKSRTFEELATHTHDMELNDQPQRKIDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTEGSLKFLLSK
        MC QGMHW LLYILQGIK RTFEELAT  HDMEL+   +   D L  ++  +    K  + IV S +K   S+++NT   LKF   K
Subjt:  MCIQGMHWELLYILQGIKSRTFEELATHTHDMELNDQPQRKIDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTEGSLKFLLSK

XP_038903381.1 uncharacterized protein LOC120089993 [Benincasa hispida]1.5e-0846.94Show/hide
Query:  MCIQGMHWELLYILQGIKSRTFEELATHTHDMELNDQPQRKIDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINT-------EGSLKFLLSKFEGA
        MC QGMHWELLYIL GIKS  FEELATH HDMEL+   +   D L  +   +    K  + IV    K+  SV+INT       +G  K +  K EGA
Subjt:  MCIQGMHWELLYILQGIKSRTFEELATHTHDMELNDQPQRKIDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINT-------EGSLKFLLSKFEGA

TrEMBL top hitse value%identityAlignment
A0A2N9I793 Uncharacterized protein2.1e-0888.57Show/hide
Query:  MCIQGMHWELLYILQGIKSRTFEELATHTHDMELN
        MCIQGMHW L YILQGIK RTFEELATHTHDMEL+
Subjt:  MCIQGMHWELLYILQGIKSRTFEELATHTHDMELN

A0A5A7SRA6 Ty3-gypsy retrotransposon protein1.2e-0854.32Show/hide
Query:  MCIQGMHWELLYILQGIKSRTFEELATHTHDMELNDQPQRKIDNLEVKLFDEVSSDKK----LQSIVPSRMKRKFSVLINT
        MC QGMHW LLYILQGIK RTFEELAT  HDMEL+  P R   +  V    EV  DKK     + +V S MK   S+++NT
Subjt:  MCIQGMHWELLYILQGIKSRTFEELATHTHDMELNDQPQRKIDNLEVKLFDEVSSDKK----LQSIVPSRMKRKFSVLINT

A0A5A7UWA5 Retrotransposon gag protein2.1e-0888.57Show/hide
Query:  MCIQGMHWELLYILQGIKSRTFEELATHTHDMELN
        MC QGMHWELLYILQGIK RTFEELAT THDMEL+
Subjt:  MCIQGMHWELLYILQGIKSRTFEELATHTHDMELN

A0A5D3CK10 Retrotransposon gag protein2.1e-0888.57Show/hide
Query:  MCIQGMHWELLYILQGIKSRTFEELATHTHDMELN
        MC QGMHWELLYILQGIK RTFEELAT THDMEL+
Subjt:  MCIQGMHWELLYILQGIKSRTFEELATHTHDMELN

M5WXF7 Retrotrans_gag domain-containing protein1.6e-0888.57Show/hide
Query:  MCIQGMHWELLYILQGIKSRTFEELATHTHDMELN
        MCIQGMHW LLYILQGIK RTFEELATH HDMEL+
Subjt:  MCIQGMHWELLYILQGIKSRTFEELATHTHDMELN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCATTCAAGGCATGCACTGGGAACTCCTCTACATCCTTCAAGGTATAAAGTCTCGCACCTTTGAAGAACTAGCAACTCACACCCACGATATGGAGCTAAACGATCA
ACCTCAACGAAAGATAGATAACTTAGAGGTGAAACTGTTCGATGAAGTAAGCAGTGACAAGAAGCTTCAAAGTATTGTCCCGTCACGTATGAAAAGGAAGTTCTCTGTTC
TCATAAATACAGAAGGTTCCTTGAAGTTCCTTCTCTCCAAGTTTGAGGGTGCTTACGTTATACGCTACTGCGTTGTTCCCTTCTCTAAGTTTGAAGGTTTTCCGATGCAC
GTTCCTGCGTTGCTCCTTCTCCAAGTTCTGATGTTGCGCTGCTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTGACGCTGCGTTGCTTCATGCCATGCTGCTTTGTTG
TTGCTTCATTCTCTCTCAAAGTTCGAAGGCGAGTCTGGTGACCACCCCTGCAGGAAACTACAGTCATCAACGTGACTGGTCTAGACTGGTGGTGAATTCACTACAAATGA
AGTCGATGATGACCGTTGTAGACGAGTTTGGTGACCACCCCTGCAGGAAACTATAG
mRNA sequenceShow/hide mRNA sequence
ATGTGCATTCAAGGCATGCACTGGGAACTCCTCTACATCCTTCAAGGTATAAAGTCTCGCACCTTTGAAGAACTAGCAACTCACACCCACGATATGGAGCTAAACGATCA
ACCTCAACGAAAGATAGATAACTTAGAGGTGAAACTGTTCGATGAAGTAAGCAGTGACAAGAAGCTTCAAAGTATTGTCCCGTCACGTATGAAAAGGAAGTTCTCTGTTC
TCATAAATACAGAAGGTTCCTTGAAGTTCCTTCTCTCCAAGTTTGAGGGTGCTTACGTTATACGCTACTGCGTTGTTCCCTTCTCTAAGTTTGAAGGTTTTCCGATGCAC
GTTCCTGCGTTGCTCCTTCTCCAAGTTCTGATGTTGCGCTGCTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTGACGCTGCGTTGCTTCATGCCATGCTGCTTTGTTG
TTGCTTCATTCTCTCTCAAAGTTCGAAGGCGAGTCTGGTGACCACCCCTGCAGGAAACTACAGTCATCAACGTGACTGGTCTAGACTGGTGGTGAATTCACTACAAATGA
AGTCGATGATGACCGTTGTAGACGAGTTTGGTGACCACCCCTGCAGGAAACTATAG
Protein sequenceShow/hide protein sequence
MCIQGMHWELLYILQGIKSRTFEELATHTHDMELNDQPQRKIDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTEGSLKFLLSKFEGAYVIRYCVVPFSKFEGFPMH
VPALLLLQVLMLRCCAASFTKFEGSDAALLHAMLLCCCFILSQSSKASLVTTPAGNYSHQRDWSRLVVNSLQMKSMMTVVDEFGDHPCRKL