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Spg030989 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030989
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationscaffold10:22509697..22511544
RNA-Seq ExpressionSpg030989
SyntenySpg030989
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]2.4e-0639.19Show/hide
Query:  MQSQPLQDLRSTCQPLHSG-------------------VYKLNQKLYVEEDKGVTEKLESVLS------DFGEFLDKLV----GNLIFISSGQEEVEIEL
        MQSQPLQ+L +T   L +G                   V+K NQKLY++ + G + K + +L         GE LD  V      L  +      VEIEL
Subjt:  MQSQPLQDLRSTCQPLHSG-------------------VYKLNQKLYVEEDKGVTEKLESVLS------DFGEFLDKLV----GNLIFISSGQEEVEIEL

Query:  PVPDTLPTSAESSKSSSS----------------YFPNQVMSGLHHVY
        PVPDTLPTSAESS+S+SS                YF NQVMS LH V+
Subjt:  PVPDTLPTSAESSKSSSS----------------YFPNQVMSGLHHVY

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-0650Show/hide
Query:  VYKLNQKLYVEEDKGVTEKLESVLSDF--GEFLDKLV----GNLIFISSGQEEVEIELPVPDTLPTSAESSKSSSSYFPNQVMSGLHHVY
        V K NQKLY++ + G + K          GE LDK V         +      VEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V+
Subjt:  VYKLNQKLYVEEDKGVTEKLESVLSDF--GEFLDKLV----GNLIFISSGQEEVEIELPVPDTLPTSAESSKSSSSYFPNQVMSGLHHVY

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]2.4e-0683.78Show/hide
Query:  VEIELPVPDTLPTSAESSKSSSSYFPNQVMSGLHHVY
        VEIELPVPDTLPTS ESS+S+SSYF NQVMSGLH V+
Subjt:  VEIELPVPDTLPTSAESSKSSSSYFPNQVMSGLHHVY

TYK21916.1 hypothetical protein E5676_scaffold494G00570 [Cucumis melo var. makuwa]4.9e-0740.87Show/hide
Query:  VYKLNQKLYVEEDKG----------------VTEKLESVLSD-----------FGEFLDKLVGNLIFIS---SGQEEVEIELPVPDTLPTSAESSKSSSS
        V+K NQKLY++ + G                 TE+L++ +S            +G     ++ +L  +S        VEIELPVPD LPTSAESS S+SS
Subjt:  VYKLNQKLYVEEDKG----------------VTEKLESVLSD-----------FGEFLDKLVGNLIFIS---SGQEEVEIELPVPDTLPTSAESSKSSSS

Query:  YFPNQVMSGLHHVYV
        YF NQVMSGL+ VYV
Subjt:  YFPNQVMSGLHHVYV

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]2.4e-0639.19Show/hide
Query:  MQSQPLQDLRSTCQPLHSG-------------------VYKLNQKLYVEEDKGVTEKLESVLS------DFGEFLDKLV----GNLIFISSGQEEVEIEL
        MQSQPLQ+L +T   L +G                   V+K NQKLY++ + G + K + +L         GE LD  V      L  +      VEIEL
Subjt:  MQSQPLQDLRSTCQPLHSG-------------------VYKLNQKLYVEEDKGVTEKLESVLS------DFGEFLDKLV----GNLIFISSGQEEVEIEL

Query:  PVPDTLPTSAESSKSSSS----------------YFPNQVMSGLHHVY
        PVPDTLPTSAESS+S+SS                YF NQVMS LH V+
Subjt:  PVPDTLPTSAESSKSSSS----------------YFPNQVMSGLHHVY

TrEMBL top hitse value%identityAlignment
A0A5A7V9N3 Reverse transcriptase1.2e-0639.19Show/hide
Query:  MQSQPLQDLRSTCQPLHSG-------------------VYKLNQKLYVEEDKGVTEKLESVLS------DFGEFLDKLV----GNLIFISSGQEEVEIEL
        MQSQPLQ+L +T   L +G                   V+K NQKLY++ + G + K + +L         GE LD  V      L  +      VEIEL
Subjt:  MQSQPLQDLRSTCQPLHSG-------------------VYKLNQKLYVEEDKGVTEKLESVLS------DFGEFLDKLV----GNLIFISSGQEEVEIEL

Query:  PVPDTLPTSAESSKSSSS----------------YFPNQVMSGLHHVY
        PVPDTLPTSAESS+S+SS                YF NQVMS LH V+
Subjt:  PVPDTLPTSAESSKSSSS----------------YFPNQVMSGLHHVY

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein6.9e-0750Show/hide
Query:  VYKLNQKLYVEEDKGVTEKLESVLSDF--GEFLDKLV----GNLIFISSGQEEVEIELPVPDTLPTSAESSKSSSSYFPNQVMSGLHHVY
        V K NQKLY++ + G + K          GE LDK V         +      VEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V+
Subjt:  VYKLNQKLYVEEDKGVTEKLESVLSDF--GEFLDKLV----GNLIFISSGQEEVEIELPVPDTLPTSAESSKSSSSYFPNQVMSGLHHVY

A0A5D3BMJ4 Retrotrans_gag domain-containing protein1.2e-0683.78Show/hide
Query:  VEIELPVPDTLPTSAESSKSSSSYFPNQVMSGLHHVY
        VEIELPVPDTLPTS ESS+S+SSYF NQVMSGLH V+
Subjt:  VEIELPVPDTLPTSAESSKSSSSYFPNQVMSGLHHVY

A0A5D3DE96 Uncharacterized protein2.4e-0740.87Show/hide
Query:  VYKLNQKLYVEEDKG----------------VTEKLESVLSD-----------FGEFLDKLVGNLIFIS---SGQEEVEIELPVPDTLPTSAESSKSSSS
        V+K NQKLY++ + G                 TE+L++ +S            +G     ++ +L  +S        VEIELPVPD LPTSAESS S+SS
Subjt:  VYKLNQKLYVEEDKG----------------VTEKLESVLSD-----------FGEFLDKLVGNLIFIS---SGQEEVEIELPVPDTLPTSAESSKSSSS

Query:  YFPNQVMSGLHHVYV
        YF NQVMSGL+ VYV
Subjt:  YFPNQVMSGLHHVYV

A0A5D3DSY7 Putative Retrotransposon protein1.2e-0639.19Show/hide
Query:  MQSQPLQDLRSTCQPLHSG-------------------VYKLNQKLYVEEDKGVTEKLESVLS------DFGEFLDKLV----GNLIFISSGQEEVEIEL
        MQSQPLQ+L +T   L +G                   V+K NQKLY++ + G + K + +L         GE LD  V      L  +      VEIEL
Subjt:  MQSQPLQDLRSTCQPLHSG-------------------VYKLNQKLYVEEDKGVTEKLESVLS------DFGEFLDKLV----GNLIFISSGQEEVEIEL

Query:  PVPDTLPTSAESSKSSSS----------------YFPNQVMSGLHHVY
        PVPDTLPTSAESS+S+SS                YF NQVMS LH V+
Subjt:  PVPDTLPTSAESSKSSSS----------------YFPNQVMSGLHHVY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTATATGTGGAGGAAGATAAAGGGGTAACAGA
GAAGCTCGAATCTGTGTTGTCTGATTTCGGGGAATTTCTGGACAAATTGGTTGGGAATCTCATTTTCATTTCTTCAGGCCAAGAGGAAGTAGAGATCGAGCTCCCGGTGC
CTGATACACTGCCAACGTCTGCTGAAAGTTCTAAATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTTCCGTGGATT
CCGCTGTGTGGTGTTTCATATAGAATGTTTTATGTCTATGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTATATGTGGAGGAAGATAAAGGGGTAACAGA
GAAGCTCGAATCTGTGTTGTCTGATTTCGGGGAATTTCTGGACAAATTGGTTGGGAATCTCATTTTCATTTCTTCAGGCCAAGAGGAAGTAGAGATCGAGCTCCCGGTGC
CTGATACACTGCCAACGTCTGCTGAAAGTTCTAAATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTTCCGTGGATT
CCGCTGTGTGGTGTTTCATATAGAATGTTTTATGTCTATGATTAG
Protein sequenceShow/hide protein sequence
MQSQPLQDLRSTCQPLHSGVYKLNQKLYVEEDKGVTEKLESVLSDFGEFLDKLVGNLIFISSGQEEVEIELPVPDTLPTSAESSKSSSSYFPNQVMSGLHHVYVERFPWI
PLCGVSYRMFYVYD