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Spg030991 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030991
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold10:22327253..22328125
RNA-Seq ExpressionSpg030991
SyntenySpg030991
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]2.1e-2161Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHTVFRAKLASGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TW                           FNVSVGSTGIVRGDDVCWLH VFR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHTVFRAKLASGPG

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]4.0e-2061.62Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSV--------GSTGIVRGDDVCWLHTVFRAKLASGPGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  + V           GIVR DDVCWLH VFRAK A GPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSV--------GSTGIVRGDDVCWLHTVFRAKLASGPGG

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]9.7e-1958.82Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FNVSVGSTGIVRGDDVCWLHTVFRAKLASGP
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS +           FN+SV STGIVRGDDVCWLH VFRAK   GP
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FNVSVGSTGIVRGDDVCWLHTVFRAKLASGP

Query:  GG
         G
Subjt:  GG

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]7.0e-1762.64Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCWLHTVFRAKLASGPGG
        MTEILS RLYGTVCTQ                 VEIELPV DTLPTSAESS S+S         S GIVR DDVCWLH+VFRAK ASGPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCWLHTVFRAKLASGPGG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]4.0e-2061.62Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSV--------GSTGIVRGDDVCWLHTVFRAKLASGPGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  + V           GIVR DDVCWLH VFRAK A GPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSV--------GSTGIVRGDDVCWLHTVFRAKLASGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein1.0e-2161Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHTVFRAKLASGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TW                           FNVSVGSTGIVRGDDVCWLH VFR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHTVFRAKLASGPG

A0A5A7VMG9 Reverse transcriptase1.9e-2061.62Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSV--------GSTGIVRGDDVCWLHTVFRAKLASGPGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  + V           GIVR DDVCWLH VFRAK A GPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSV--------GSTGIVRGDDVCWLHTVFRAKLASGPGG

A0A5D3BMJ4 Retrotrans_gag domain-containing protein4.7e-1958.82Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FNVSVGSTGIVRGDDVCWLHTVFRAKLASGP
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS +           FN+SV STGIVRGDDVCWLH VFRAK   GP
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FNVSVGSTGIVRGDDVCWLHTVFRAKLASGP

Query:  GG
         G
Subjt:  GG

A0A5D3CU23 Retrotrans_gag domain-containing protein3.4e-1762.64Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCWLHTVFRAKLASGPGG
        MTEILS RLYGTVCTQ                 VEIELPV DTLPTSAESS S+S         S GIVR DDVCWLH+VFRAK ASGPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCWLHTVFRAKLASGPGG

A0A5D3DX39 Reverse transcriptase1.9e-2061.62Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSV--------GSTGIVRGDDVCWLHTVFRAKLASGPGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  + V           GIVR DDVCWLH VFRAK A GPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSV--------GSTGIVRGDDVCWLHTVFRAKLASGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACACCGTCTTTCGGGCTAAGCTAGCAAGTGGTCCGGGAG
GG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACACCGTCTTTCGGGCTAAGCTAGCAAGTGGTCCGGGAG
GG
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCWLHTVFRAKLASGPGG