; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg030996 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030996
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold10:21821561..21825214
RNA-Seq ExpressionSpg030996
SyntenySpg030996
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037787.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.5e-1061.43Show/hide
Query:  VYKLNQKLYLVEIELPVPDTLPTSAESSRSSSSSMFQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTI
        V+KLNQKLYLVEIELPV DTLPTSAESS S+S S         +  DDV WL  +FRAK  GGPGG   +
Subjt:  VYKLNQKLYLVEIELPVPDTLPTSAESSRSSSSSMFQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTI

KAA0042466.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-0965.57Show/hide
Query:  YLVEIELPVPDTLPTSAESSRSSSSSMFQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVT
        +LV IELPVPDTLPTSAESSRS+S S+        +  DDV WLHA+FRAK  GGPGG VT
Subjt:  YLVEIELPVPDTLPTSAESSRSSSSSMFQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVT

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]4.4e-1047.47Show/hide
Query:  LCLIRGREEHRIFEQSRRISGVLWCFEHSGVYKLNQKLYLVEIELPVPDTLPTSAESSRSSSSSMFQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVT
        L L+R R      +  +    V++      V + N    +VEIELPVPDTLPTSAES  S+S S         +  DDV WLHA+FRAK AGGPGGGVT
Subjt:  LCLIRGREEHRIFEQSRRISGVLWCFEHSGVYKLNQKLYLVEIELPVPDTLPTSAESSRSSSSSMFQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVT

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]2.6e-1062.32Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSS---MFQEGQRVSL-------EEDDVRWLHAIFRAKLAGGPGGGV
        +VEIELPVPDTLPTSAESS S+SS+   ++ E   V +        EDDV WLHA+FRAK AGGPGGGV
Subjt:  LVEIELPVPDTLPTSAESSRSSSSS---MFQEGQRVSL-------EEDDVRWLHAIFRAKLAGGPGGGV

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.6e-1062.32Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSS---MFQEGQRVSL-------EEDDVRWLHAIFRAKLAGGPGGGV
        +VEIELPVPDTLPTSAESS S+SS+   ++ E   V +        EDDV WLHA+FRAK AGGPGGGV
Subjt:  LVEIELPVPDTLPTSAESSRSSSSS---MFQEGQRVSL-------EEDDVRWLHAIFRAKLAGGPGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7TKJ1 Retrotransposon protein8.0e-1065.57Show/hide
Query:  YLVEIELPVPDTLPTSAESSRSSSSSMFQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVT
        +LV IELPVPDTLPTSAESSRS+S S+        +  DDV WLHA+FRAK  GGPGG VT
Subjt:  YLVEIELPVPDTLPTSAESSRSSSSSMFQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVT

A0A5A7VMG9 Reverse transcriptase1.2e-1062.32Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSS---MFQEGQRVSL-------EEDDVRWLHAIFRAKLAGGPGGGV
        +VEIELPVPDTLPTSAESS S+SS+   ++ E   V +        EDDV WLHA+FRAK AGGPGGGV
Subjt:  LVEIELPVPDTLPTSAESSRSSSSS---MFQEGQRVSL-------EEDDVRWLHAIFRAKLAGGPGGGV

A0A5D3BAD1 Retrotrans_gag domain-containing protein2.1e-1047.47Show/hide
Query:  LCLIRGREEHRIFEQSRRISGVLWCFEHSGVYKLNQKLYLVEIELPVPDTLPTSAESSRSSSSSMFQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVT
        L L+R R      +  +    V++      V + N    +VEIELPVPDTLPTSAES  S+S S         +  DDV WLHA+FRAK AGGPGGGVT
Subjt:  LCLIRGREEHRIFEQSRRISGVLWCFEHSGVYKLNQKLYLVEIELPVPDTLPTSAESSRSSSSSMFQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVT

A0A5D3DVK1 Ty3-gypsy retrotransposon protein7.3e-1161.43Show/hide
Query:  VYKLNQKLYLVEIELPVPDTLPTSAESSRSSSSSMFQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTI
        V+KLNQKLYLVEIELPV DTLPTSAESS S+S S         +  DDV WL  +FRAK  GGPGG   +
Subjt:  VYKLNQKLYLVEIELPVPDTLPTSAESSRSSSSSMFQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTI

A0A5D3DX39 Reverse transcriptase1.2e-1062.32Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSS---MFQEGQRVSL-------EEDDVRWLHAIFRAKLAGGPGGGV
        +VEIELPVPDTLPTSAESS S+SS+   ++ E   V +        EDDV WLHA+FRAK AGGPGGGV
Subjt:  LVEIELPVPDTLPTSAESSRSSSSS---MFQEGQRVSL-------EEDDVRWLHAIFRAKLAGGPGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAAGAAACGATCTCCATCGAAGGGGAAGGTCCTTTTGTCTGATTTGAGGGTTGCTGTGAAGGCGCAGGCGAGGGCTGATGGGTCTTTGGTTGAGGAGGTTAATGG
GTCTTCGGTTGTGAATGGGTCTGTGATCGATGAGGCACTTGGGTCTTCTACTGTTTTGAAGAACTTACAGTCGGACAAAGTTAGGGCTGGTGCGTCTTCTGCGATCGTGG
AGGAGAGGCTGGTTTCTTCTTCGGCTAAGCTTCCGACGGTGGAGAAGACGGGTGCTGCGGCGTCTAGTTCTTCTTCCGTTTTACTGCCGCCGTTGGAGAAGAAGGGAGCT
AGGGATCCGTCTTTCGTGCAAGCTGTGGCTAGGGCAAATTTGCTGCATGCTCGGGTGAGGGGAGGATTGGTGGATCAGGGTGGGCAGGTTGGATCGGGTATGGATCTTCA
ACCCGTGGAGCATGTGGTTAAGGGTCTGATTGGGCCTGGGCTTTCTAAGGAAGGGTTAGTTTCTAGTAAGGGTGAGGGCTTGAAGGCTGTTTCTTCAAGTGATTTGGGTT
CTCAATCCATGCAGCATGGTAAAGTTCCGATTGGGCCTAGTGGACCTTCTAAGGATGAGGGGTCAGCTTCCACAATTGTCTCTCACTCCATGAAGCAAGTGGGTAGGGGC
CGATTGGGGCTGTCACTAGTGGGCCAAGTGGGCTTGTGTCTAATAAGGGGGAGGGAAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTGTTCTCTGGTGTTT
TGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCA
GTTCAATGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTCCGGGCTAAGCTAGCAGGTGGCCCAGGAGGGGGTGTGACA
ATATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGAAGAAACGATCTCCATCGAAGGGGAAGGTCCTTTTGTCTGATTTGAGGGTTGCTGTGAAGGCGCAGGCGAGGGCTGATGGGTCTTTGGTTGAGGAGGTTAATGG
GTCTTCGGTTGTGAATGGGTCTGTGATCGATGAGGCACTTGGGTCTTCTACTGTTTTGAAGAACTTACAGTCGGACAAAGTTAGGGCTGGTGCGTCTTCTGCGATCGTGG
AGGAGAGGCTGGTTTCTTCTTCGGCTAAGCTTCCGACGGTGGAGAAGACGGGTGCTGCGGCGTCTAGTTCTTCTTCCGTTTTACTGCCGCCGTTGGAGAAGAAGGGAGCT
AGGGATCCGTCTTTCGTGCAAGCTGTGGCTAGGGCAAATTTGCTGCATGCTCGGGTGAGGGGAGGATTGGTGGATCAGGGTGGGCAGGTTGGATCGGGTATGGATCTTCA
ACCCGTGGAGCATGTGGTTAAGGGTCTGATTGGGCCTGGGCTTTCTAAGGAAGGGTTAGTTTCTAGTAAGGGTGAGGGCTTGAAGGCTGTTTCTTCAAGTGATTTGGGTT
CTCAATCCATGCAGCATGGTAAAGTTCCGATTGGGCCTAGTGGACCTTCTAAGGATGAGGGGTCAGCTTCCACAATTGTCTCTCACTCCATGAAGCAAGTGGGTAGGGGC
CGATTGGGGCTGTCACTAGTGGGCCAAGTGGGCTTGTGTCTAATAAGGGGGAGGGAAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTGTTCTCTGGTGTTT
TGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCA
GTTCAATGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTCCGGGCTAAGCTAGCAGGTGGCCCAGGAGGGGGTGTGACA
ATATGA
Protein sequenceShow/hide protein sequence
MGKKRSPSKGKVLLSDLRVAVKAQARADGSLVEEVNGSSVVNGSVIDEALGSSTVLKNLQSDKVRAGASSAIVEERLVSSSAKLPTVEKTGAAASSSSSVLLPPLEKKGA
RDPSFVQAVARANLLHARVRGGLVDQGGQVGSGMDLQPVEHVVKGLIGPGLSKEGLVSSKGEGLKAVSSSDLGSQSMQHGKVPIGPSGPSKDEGSASTIVSHSMKQVGRG
RLGLSLVGQVGLCLIRGREEHRIFEQSRRISGVLWCFEHSGVYKLNQKLYLVEIELPVPDTLPTSAESSRSSSSSMFQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVT
I