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Spg031019 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031019
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold10:21752009..21752863
RNA-Seq ExpressionSpg031019
SyntenySpg031019
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]1.3e-2165.93Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ--------------TRFNISVGSTGIVRGDDVCWLTPSF
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TWLELY ESV  +                FN+SVGSTGIVRGDDVCWL   F
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ--------------TRFNISVGSTGIVRGDDVCWLTPSF

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-1659.57Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNISVGSTGIVRGDDVCWLTPSF
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWLELY+E V  +  +       GIVR DDVCWL   F
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNISVGSTGIVRGDDVCWLTPSF

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]6.0e-1456.38Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNISVGSTGIVRGDDVCWLTPSF
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS +    +  +     FNISV STGIVRGDDVCWL   F
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNISVGSTGIVRGDDVCWLTPSF

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.1e-1554.29Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFN-----------ISVGSTGIVRGDDVCW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   S+SSTWLELY+ESV  +  F               GS GIVRGDDVCW
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFN-----------ISVGSTGIVRGDDVCW

Query:  LTPSF
        L   F
Subjt:  LTPSF

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-1659.57Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNISVGSTGIVRGDDVCWLTPSF
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWLELY+E V  +  +       GIVR DDVCWL   F
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNISVGSTGIVRGDDVCWLTPSF

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein6.4e-2265.93Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ--------------TRFNISVGSTGIVRGDDVCWLTPSF
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TWLELY ESV  +                FN+SVGSTGIVRGDDVCWL   F
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ--------------TRFNISVGSTGIVRGDDVCWLTPSF

A0A5A7VMG9 Reverse transcriptase6.2e-1759.57Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNISVGSTGIVRGDDVCWLTPSF
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWLELY+E V  +  +       GIVR DDVCWL   F
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNISVGSTGIVRGDDVCWLTPSF

A0A5D3BMJ4 Retrotrans_gag domain-containing protein2.9e-1456.38Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNISVGSTGIVRGDDVCWLTPSF
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS +    +  +     FNISV STGIVRGDDVCWL   F
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNISVGSTGIVRGDDVCWLTPSF

A0A5D3CCC7 DNA/RNA polymerases superfamily protein3.4e-1554.29Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFN-----------ISVGSTGIVRGDDVCW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   S+SSTWLELY+ESV  +  F               GS GIVRGDDVCW
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFN-----------ISVGSTGIVRGDDVCW

Query:  LTPSF
        L   F
Subjt:  LTPSF

A0A5D3DX39 Reverse transcriptase6.2e-1759.57Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNISVGSTGIVRGDDVCWLTPSF
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWLELY+E V  +  +       GIVR DDVCWL   F
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNISVGSTGIVRGDDVCWLTPSF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACATTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTCA
CGCCGTCTTTCGGGCTAAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACATTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTCA
CGCCGTCTTTCGGGCTAAGCTAG
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNISVGSTGIVRGDDVCWLTPSFGLS