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Spg031024 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031024
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold10:22189463..22192608
RNA-Seq ExpressionSpg031024
SyntenySpg031024
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016301 - kinase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025994.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]2.6e-0979.49Show/hide
Query:  MVRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLG
        +VRVA  PTQY YHFGDKTEWGAGN + QDGIHSFP LG
Subjt:  MVRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLG
KAA0043328.1 gag/pol protein [Cucumis melo var. makuwa]2.6e-0972.73Show/hide
Query:  GLAPEMVRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLG
        GL    +RVA  PTQY YHF DKTEWGAGNI+ QDGIHSFP LG
Subjt:  GLAPEMVRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLG
KAA0065950.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.5e-0984.21Show/hide
Query:  VRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLG
        VRVA  PTQY YHFGDKTEWGAGNI+ QDGIHSFP LG
Subjt:  VRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLG
KAA0067076.1 gag/pol protein [Cucumis melo var. makuwa]2.3e-1377.55Show/hide
Query:  VRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLGLFIRGALVLKD
        VRVA  PT+Y YHFGDKTEWG GNI+ QDGIHSFP L LFIRGAL+ KD
Subjt:  VRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLGLFIRGALVLKD
TYK26313.1 gag/pol protein [Cucumis melo var. makuwa]2.3e-1377.55Show/hide
Query:  VRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLGLFIRGALVLKD
        VRVA  PT+Y YHFGDKTEWG GNI+ QDGIHSFP L LFIRGAL+ KD
Subjt:  VRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLGLFIRGALVLKD
TrEMBL top hitse value%identityAlignment
A0A5A7SJY0 Retrotransposon protein putative ty3-gypsy sub-class1.2e-0979.49Show/hide
Query:  MVRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLG
        +VRVA  PTQY YHFGDKTEWGAGN + QDGIHSFP LG
Subjt:  MVRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLG
A0A5A7TKJ4 Gag/pol protein1.2e-0972.73Show/hide
Query:  GLAPEMVRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLG
        GL    +RVA  PTQY YHF DKTEWGAGNI+ QDGIHSFP LG
Subjt:  GLAPEMVRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLG
A0A5A7VFG5 Ty1-copia retrotransposon protein7.3e-1084.21Show/hide
Query:  VRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLG
        VRVA  PTQY YHFGDKTEWGAGNI+ QDGIHSFP LG
Subjt:  VRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLG
A0A5A7VKV9 Gag/pol protein1.1e-1377.55Show/hide
Query:  VRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLGLFIRGALVLKD
        VRVA  PT+Y YHFGDKTEWG GNI+ QDGIHSFP L LFIRGAL+ KD
Subjt:  VRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLGLFIRGALVLKD
A0A5D3DRR2 Gag/pol protein1.1e-1377.55Show/hide
Query:  VRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLGLFIRGALVLKD
        VRVA  PT+Y YHFGDKTEWG GNI+ QDGIHSFP L LFIRGAL+ KD
Subjt:  VRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLGLFIRGALVLKD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCCCGCATCCGAAGCATCGAGACGTCGGGAGATGGCCTCTCGACGCCATCTCTCGGGTCTTCAAGAATAGGCTGCTTCAAAACTTGATCCGTTTGGCGCTGATTTC
GAGTCCCGAGCACTCCACTAAGCGGAAGCGTGATTGGGACCGATTCTGCGAACACCACCACTATGGCTACACCGGTATGACTCTGAGACTTCTAGAGGCAGGAGACTGTT
GGGAGTCTAGAGGAAGCCTTGAGGGGAATTCTCTGAGAAATATTTCTGTGTCCACGGATATTGACCAATGCAGAGTTCCTCTCGGGCCAGGAGAGGACGGCGCGCCTTTG
TTCAAGTTCCAGAATCAGCCCTTAAGGGAACACACATCTACTTACCCCAATAGGGGAAGGAGTGAATTCCATCTTGTACTGTTATGTTCCCAGCCCCCATTCGGTCTTGC
CCCTGAAATGGTGAGAGTGGCCTGCTCGCCGACTCAATATGATTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACATAGTCTTACAAGATGGAATTCACTCCT
TCCCAACTTTAGGGTTGTTCATTAGAGGAGCATTGGTACTTAAGGACCAAGAGGCCAAGAACGACTTGTGGGAGTCTATAGAGATAGGGAATGGGAAGGGAATGCTTGAA
GGTTCAAGCACTAGAGAGATATATGGAGATGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCCCGCATCCGAAGCATCGAGACGTCGGGAGATGGCCTCTCGACGCCATCTCTCGGGTCTTCAAGAATAGGCTGCTTCAAAACTTGATCCGTTTGGCGCTGATTTC
GAGTCCCGAGCACTCCACTAAGCGGAAGCGTGATTGGGACCGATTCTGCGAACACCACCACTATGGCTACACCGGTATGACTCTGAGACTTCTAGAGGCAGGAGACTGTT
GGGAGTCTAGAGGAAGCCTTGAGGGGAATTCTCTGAGAAATATTTCTGTGTCCACGGATATTGACCAATGCAGAGTTCCTCTCGGGCCAGGAGAGGACGGCGCGCCTTTG
TTCAAGTTCCAGAATCAGCCCTTAAGGGAACACACATCTACTTACCCCAATAGGGGAAGGAGTGAATTCCATCTTGTACTGTTATGTTCCCAGCCCCCATTCGGTCTTGC
CCCTGAAATGGTGAGAGTGGCCTGCTCGCCGACTCAATATGATTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACATAGTCTTACAAGATGGAATTCACTCCT
TCCCAACTTTAGGGTTGTTCATTAGAGGAGCATTGGTACTTAAGGACCAAGAGGCCAAGAACGACTTGTGGGAGTCTATAGAGATAGGGAATGGGAAGGGAATGCTTGAA
GGTTCAAGCACTAGAGAGATATATGGAGATGAGTGA
Protein sequenceShow/hide protein sequence
MVPHPKHRDVGRWPLDAISRVFKNRLLQNLIRLALISSPEHSTKRKRDWDRFCEHHHYGYTGMTLRLLEAGDCWESRGSLEGNSLRNISVSTDIDQCRVPLGPGEDGAPL
FKFQNQPLREHTSTYPNRGRSEFHLVLLCSQPPFGLAPEMVRVACSPTQYDYHFGDKTEWGAGNIVLQDGIHSFPTLGLFIRGALVLKDQEAKNDLWESIEIGNGKGMLE
GSSTREIYGDE