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Spg031028 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031028
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold10:23450980..23451684
RNA-Seq ExpressionSpg031028
SyntenySpg031028
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031555.1 retrotransposon protein [Cucumis melo var. makuwa]9.8e-1239.62Show/hide
Query:  KCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASSHLVDKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITPTSR
        KC+ AEKE+FD WV+SH A  GL  KPFP+Y+EL +VFG+DRA+G      A+  S+        F+MG   + +   PP ++  V++  ++V  +  SR
Subjt:  KCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASSHLVDKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITPTSR

Query:  SSTDGT
        +S   T
Subjt:  SSTDGT

KAA0058882.1 retrotransposon protein [Cucumis melo var. makuwa]7.5e-1239.62Show/hide
Query:  KCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASSHLVDKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITPTSR
        KC+ AEKE+FD WV+SH A  GL  KPFP+Y+EL +VFG+DRA+G      A+  S+        F+MG   + +   PP ++  V++  ++V  +  SR
Subjt:  KCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASSHLVDKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITPTSR

Query:  SSTDGT
        +S   T
Subjt:  SSTDGT

TYJ96194.1 retrotransposon protein [Cucumis melo var. makuwa]9.8e-1239.62Show/hide
Query:  KCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASSHLVDKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITPTSR
        KC+ AEKE+FD WV+SH A  GL  KPFP+Y+EL +VFG+DRA+G      A+  S+        F+MG   + +   PP ++  V++  ++V  +  SR
Subjt:  KCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASSHLVDKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITPTSR

Query:  SSTDGT
        +S   T
Subjt:  SSTDGT

TYK10915.1 retrotransposon protein [Cucumis melo var. makuwa]9.8e-1239.62Show/hide
Query:  KCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASSHLVDKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITPTSR
        KC+ AEKE+FD WV+SH A  GL  KPFP+Y+EL +VFG+DRA+G      A+  S+        F+MG   + +   PP ++  V++  ++V  +  SR
Subjt:  KCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASSHLVDKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITPTSR

Query:  SSTDGT
        +S   T
Subjt:  SSTDGT

XP_022158565.1 uncharacterized protein LOC111025018 [Momordica charantia]2.5e-1545.45Show/hide
Query:  YKCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASS--HLVDKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITP
        +KC+EAEKE+FD WVKSH    GL  KP PHY++L   FGKDRA+G     P + ASS    + ++ +F    +  +Y+P PP FN + +   E++P TP
Subjt:  YKCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASS--HLVDKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITP

Query:  TSRSSTDGTS
        TS+  T GTS
Subjt:  TSRSSTDGTS

TrEMBL top hitse value%identityAlignment
A0A5A7TRV1 Retrotransposon protein4.7e-1239.62Show/hide
Query:  KCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASSHLVDKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITPTSR
        KC+ AEKE+FD WV+SH A  GL  KPFP+Y+EL +VFG+DRA+G      A+  S+        F+MG   + +   PP ++  V++  ++V  +  SR
Subjt:  KCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASSHLVDKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITPTSR

Query:  SSTDGT
        +S   T
Subjt:  SSTDGT

A0A5A7USM3 Retrotransposon protein3.6e-1239.62Show/hide
Query:  KCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASSHLVDKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITPTSR
        KC+ AEKE+FD WV+SH A  GL  KPFP+Y+EL +VFG+DRA+G      A+  S+        F+MG   + +   PP ++  V++  ++V  +  SR
Subjt:  KCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASSHLVDKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITPTSR

Query:  SSTDGT
        +S   T
Subjt:  SSTDGT

A0A5D3CWL2 Retrotransposon protein4.7e-1239.62Show/hide
Query:  KCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASSHLVDKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITPTSR
        KC+ AEKE+FD WV+SH A  GL  KPFP+Y+EL +VFG+DRA+G      A+  S+        F+MG   + +   PP ++  V++  ++V  +  SR
Subjt:  KCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASSHLVDKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITPTSR

Query:  SSTDGT
        +S   T
Subjt:  SSTDGT

A0A5D3DCZ1 Retrotransposon protein4.7e-1239.62Show/hide
Query:  KCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASSHLVDKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITPTSR
        KC+ AEKE+FD WV+SH A  GL  KPFP+Y+EL +VFG+DRA+G      A+  S+        F+MG   + +   PP ++  V++  ++V  +  SR
Subjt:  KCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASSHLVDKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITPTSR

Query:  SSTDGT
        +S   T
Subjt:  SSTDGT

A0A6J1DW73 uncharacterized protein LOC1110250181.2e-1545.45Show/hide
Query:  YKCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASS--HLVDKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITP
        +KC+EAEKE+FD WVKSH    GL  KP PHY++L   FGKDRA+G     P + ASS    + ++ +F    +  +Y+P PP FN + +   E++P TP
Subjt:  YKCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASS--HLVDKEGNFNMGGSPKYYVPVPPAFNVSVEVEFEEVPITP

Query:  TSRSSTDGTS
        TS+  T GTS
Subjt:  TSRSSTDGTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGTAGGACTATGGCAGGTGTCGAAAAACAAGCAAAACACATATGGACCAGATTTGAGGAGGCGAAAATTAGTTGAGTGCCTCGTTGAACTGTACAAATGTGTTGA
AGCTGAGAAGGAAATGTTCGACGTGTGGGTCAAGTCTCACTTAGCTACGAATGGACTCCCGATCAAGCCATTCCCTCACTATGAGGAATTGGCCTTCGTGTTCGGCAAGG
ATAGAGCTAGCGGGGTGGGGTGTTCTGTGCCAGCTGAACAAGCCTCGAGCCACCTTGTGGACAAAGAGGGCAATTTCAACATGGGAGGGTCGCCAAAATATTATGTCCCA
GTGCCACCTGCGTTTAATGTCTCCGTCGAGGTCGAGTTTGAGGAAGTTCCCATCACCCCTACCAGTAGGTCGAGCACAGATGGGACGTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGCATGTAGGACTATGGCAGGTGTCGAAAAACAAGCAAAACACATATGGACCAGATTTGAGGAGGCGAAAATTAGTTGAGTGCCTCGTTGAACTGTACAAATGTGTTGA
AGCTGAGAAGGAAATGTTCGACGTGTGGGTCAAGTCTCACTTAGCTACGAATGGACTCCCGATCAAGCCATTCCCTCACTATGAGGAATTGGCCTTCGTGTTCGGCAAGG
ATAGAGCTAGCGGGGTGGGGTGTTCTGTGCCAGCTGAACAAGCCTCGAGCCACCTTGTGGACAAAGAGGGCAATTTCAACATGGGAGGGTCGCCAAAATATTATGTCCCA
GTGCCACCTGCGTTTAATGTCTCCGTCGAGGTCGAGTTTGAGGAAGTTCCCATCACCCCTACCAGTAGGTCGAGCACAGATGGGACGTCATAG
Protein sequenceShow/hide protein sequence
MHVGLWQVSKNKQNTYGPDLRRRKLVECLVELYKCVEAEKEMFDVWVKSHLATNGLPIKPFPHYEELAFVFGKDRASGVGCSVPAEQASSHLVDKEGNFNMGGSPKYYVP
VPPAFNVSVEVEFEEVPITPTSRSSTDGTS