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Spg031035 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031035
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold10:22497758..22506708
RNA-Seq ExpressionSpg031035
SyntenySpg031035
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043405.1 hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa]8.0e-2850Show/hide
Query:  KKGETSTSLVKPKVVEDEKCSP--VLRYVPLSRRKKGESPFTECPKNIK-------------KKLLKEGYSLPTTRKELGYKSPEPVCITRKGKAKVADI
        +KGE STS  K  ++ DEK S   +LRYVPLSRR+KGESPF + P+ +K             KKLL+EG+ +P +RK  GYKSPEP+ I RK K KV D 
Subjt:  KKGETSTSLVKPKVVEDEKCSP--VLRYVPLSRRKKGESPFTECPKNIK-------------KKLLKEGYSLPTTRKELGYKSPEPVCITRKGKAKVADI

Query:  NHITVEEVDDSKEEESVDQRASVFRHIRPPVARASVFQRIIVNETEEESAQPTNSSTRSS
        NHITV EVD  +E+E   QR S F  IRP V R +VF+R+ V +TE +  Q T+S  + S
Subjt:  NHITVEEVDDSKEEESVDQRASVFRHIRPPVARASVFQRIIVNETEEESAQPTNSSTRSS

KAA0047672.1 uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa]4.4e-2650Show/hide
Query:  KGETSTSLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPKNIKK---KLLKEGYSL---PTTRKELGYKSPEPVCITRKGKAKVADINHITVEEV
        K E STS  K  ++ +E  S  P+LRYVPLSR KKGESPF E P+ +K    ++LKE +++     T+K LGYKSPEP+ ITRKGK KV D NHITV+EV
Subjt:  KGETSTSLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPKNIKK---KLLKEGYSL---PTTRKELGYKSPEPVCITRKGKAKVADINHITVEEV

Query:  DDSKEEESVDQRASVFRHIRPPVARASVFQRIIVNETEEESAQPTNSSTRSSVF
        D  + +E   QR S F  I P VARA VF+R+ + E + +  Q T++  R S F
Subjt:  DDSKEEESVDQRASVFRHIRPPVARASVFQRIIVNETEEESAQPTNSSTRSSVF

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.3e-3330.17Show/hide
Query:  KEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEAL
        +E T + SQEK   IE+++EGWT+V RRKK+K +  +KESRL+ + +R  K+Q+ K KKK+R+ K V EK +DF      +TLA++FP RFL D Q E  
Subjt:  KEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEAL

Query:  EIVT-----------------CHIVDMVEDD---------------------------------------------------------------------
         +V                  C  +D  ++D                                                                     
Subjt:  EIVT-----------------CHIVDMVEDD---------------------------------------------------------------------

Query:  ------------------DVP-------------ATVEDVKASDL---KKGETSTSLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPKNIK---
                          +VP             A+ E  K++      K E STS  K  +V DEK S  P+LRYVPLSRRKKGESPF E P+ +K   
Subjt:  ------------------DVP-------------ATVEDVKASDL---KKGETSTSLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPKNIK---

Query:  --------------------------------------------------------------------------KKLLKEGYSLPTTRKELGYKSPEPVC
                                                                                  KKLL+EG+++P +RK LGYK PEP+ 
Subjt:  --------------------------------------------------------------------------KKLLKEGYSLPTTRKELGYKSPEPVC

Query:  ITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRHIRPPVARASVFQRIIVNETEEESAQPTNSSTRSSVF
        ITRKGK KV D NHITV+EVD  +E+E   QR S F  + P VARA VF+R+ + E E +  Q T+S  R S F
Subjt:  ITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRHIRPPVARASVFQRIIVNETEEESAQPTNSSTRSSVF

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.0e-0760.61Show/hide
Query:  MSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETIESSQTRVVRFRKEATMKG
        MSVMMAD+  +  MAEMERK+N LMKAV+ERD EI  L+ Q++ RET ESSQT +V+    AT KG
Subjt:  MSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETIESSQTRVVRFRKEATMKG

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.1e-2843.98Show/hide
Query:  KGETSTSLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPKNIK-------------------------------------------KKLLKEGYS
        K E ST+  K  ++ DEK S  P+LRYVPLSRRKKGESPF E P+ +K                                           KKLL+EG+ 
Subjt:  KGETSTSLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPKNIK-------------------------------------------KKLLKEGYS

Query:  LPTTRKELGYKSPEPVCITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRHIRPPVARASVFQRIIVNETEEESAQPTNSSTRSSVF
        +P +RK LGYKSPEP+ ITRKGK KV D NHITV+EVD  +E+E  +QR S F  I P VARA VF+R+ + E + +  Q T++  R S F
Subjt:  LPTTRKELGYKSPEPVCITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRHIRPPVARASVFQRIIVNETEEESAQPTNSSTRSSVF

TYK28162.1 uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]6.8e-2741.79Show/hide
Query:  KGETSTSLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPKNIK----------------------------------------------------
        K E ST+  K  ++ DEK S  P+LRYVPLSRRKKGESPF E P+ +K                                                    
Subjt:  KGETSTSLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPKNIK----------------------------------------------------

Query:  -KKLLKEGYSLPTTRKELGYKSPEPVCITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRHIRPPVARASVFQRIIVNETEEESAQPTNSSTRSSV
         KKLL+EG+ +P +RK LGYKSPEP+ ITRKGK KV D NHITV+EVD  +E+E  +QR S F  I P VARA VF+R+ + E E +  Q T++  + S 
Subjt:  -KKLLKEGYSLPTTRKELGYKSPEPVCITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRHIRPPVARASVFQRIIVNETEEESAQPTNSSTRSSV

Query:  F
        F
Subjt:  F

TrEMBL top hitse value%identityAlignment
A0A5A7TPR5 RNase H domain-containing protein3.9e-2850Show/hide
Query:  KKGETSTSLVKPKVVEDEKCSP--VLRYVPLSRRKKGESPFTECPKNIK-------------KKLLKEGYSLPTTRKELGYKSPEPVCITRKGKAKVADI
        +KGE STS  K  ++ DEK S   +LRYVPLSRR+KGESPF + P+ +K             KKLL+EG+ +P +RK  GYKSPEP+ I RK K KV D 
Subjt:  KKGETSTSLVKPKVVEDEKCSP--VLRYVPLSRRKKGESPFTECPKNIK-------------KKLLKEGYSLPTTRKELGYKSPEPVCITRKGKAKVADI

Query:  NHITVEEVDDSKEEESVDQRASVFRHIRPPVARASVFQRIIVNETEEESAQPTNSSTRSS
        NHITV EVD  +E+E   QR S F  IRP V R +VF+R+ V +TE +  Q T+S  + S
Subjt:  NHITVEEVDDSKEEESVDQRASVFRHIRPPVARASVFQRIIVNETEEESAQPTNSSTRSS

A0A5D3BY54 Ty3-gypsy retrotransposon protein4.0e-3330.17Show/hide
Query:  KEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEAL
        +E T + SQEK   IE+++EGWT+V RRKK+K +  +KESRL+ + +R  K+Q+ K KKK+R+ K V EK +DF      +TLA++FP RFL D Q E  
Subjt:  KEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEAL

Query:  EIVT-----------------CHIVDMVEDD---------------------------------------------------------------------
         +V                  C  +D  ++D                                                                     
Subjt:  EIVT-----------------CHIVDMVEDD---------------------------------------------------------------------

Query:  ------------------DVP-------------ATVEDVKASDL---KKGETSTSLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPKNIK---
                          +VP             A+ E  K++      K E STS  K  +V DEK S  P+LRYVPLSRRKKGESPF E P+ +K   
Subjt:  ------------------DVP-------------ATVEDVKASDL---KKGETSTSLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPKNIK---

Query:  --------------------------------------------------------------------------KKLLKEGYSLPTTRKELGYKSPEPVC
                                                                                  KKLL+EG+++P +RK LGYK PEP+ 
Subjt:  --------------------------------------------------------------------------KKLLKEGYSLPTTRKELGYKSPEPVC

Query:  ITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRHIRPPVARASVFQRIIVNETEEESAQPTNSSTRSSVF
        ITRKGK KV D NHITV+EVD  +E+E   QR S F  + P VARA VF+R+ + E E +  Q T+S  R S F
Subjt:  ITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRHIRPPVARASVFQRIIVNETEEESAQPTNSSTRSSVF

A0A5D3BY54 Ty3-gypsy retrotransposon protein9.9e-0860.61Show/hide
Query:  MSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETIESSQTRVVRFRKEATMKG
        MSVMMAD+  +  MAEMERK+N LMKAV+ERD EI  L+ Q++ RET ESSQT +V+    AT KG
Subjt:  MSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETIESSQTRVVRFRKEATMKG

A0A5D3BY54 Ty3-gypsy retrotransposon protein3.0e-2843.98Show/hide
Query:  KGETSTSLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPKNIK-------------------------------------------KKLLKEGYS
        K E ST+  K  ++ DEK S  P+LRYVPLSRRKKGESPF E P+ +K                                           KKLL+EG+ 
Subjt:  KGETSTSLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPKNIK-------------------------------------------KKLLKEGYS

Query:  LPTTRKELGYKSPEPVCITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRHIRPPVARASVFQRIIVNETEEESAQPTNSSTRSSVF
        +P +RK LGYKSPEP+ ITRKGK KV D NHITV+EVD  +E+E  +QR S F  I P VARA VF+R+ + E + +  Q T++  R S F
Subjt:  LPTTRKELGYKSPEPVCITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRHIRPPVARASVFQRIIVNETEEESAQPTNSSTRSSVF

A0A5D3C8N8 Ribonuclease H2.1e-2650Show/hide
Query:  KGETSTSLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPKNIKK---KLLKEGYSL---PTTRKELGYKSPEPVCITRKGKAKVADINHITVEEV
        K E STS  K  ++ +E  S  P+LRYVPLSR KKGESPF E P+ +K    ++LKE +++     T+K LGYKSPEP+ ITRKGK KV D NHITV+EV
Subjt:  KGETSTSLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPKNIKK---KLLKEGYSL---PTTRKELGYKSPEPVCITRKGKAKVADINHITVEEV

Query:  DDSKEEESVDQRASVFRHIRPPVARASVFQRIIVNETEEESAQPTNSSTRSSVF
        D  + +E   QR S F  I P VARA VF+R+ + E + +  Q T++  R S F
Subjt:  DDSKEEESVDQRASVFRHIRPPVARASVFQRIIVNETEEESAQPTNSSTRSSVF

A0A5D3DXC7 Reverse transcriptase domain-containing protein3.3e-2741.79Show/hide
Query:  KGETSTSLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPKNIK----------------------------------------------------
        K E ST+  K  ++ DEK S  P+LRYVPLSRRKKGESPF E P+ +K                                                    
Subjt:  KGETSTSLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPKNIK----------------------------------------------------

Query:  -KKLLKEGYSLPTTRKELGYKSPEPVCITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRHIRPPVARASVFQRIIVNETEEESAQPTNSSTRSSV
         KKLL+EG+ +P +RK LGYKSPEP+ ITRKGK KV D NHITV+EVD  +E+E  +QR S F  I P VARA VF+R+ + E E +  Q T++  + S 
Subjt:  -KKLLKEGYSLPTTRKELGYKSPEPVCITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRHIRPPVARASVFQRIIVNETEEESAQPTNSSTRSSV

Query:  F
        F
Subjt:  F

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTGATGAAGGCAGTTGATGAAAGAGATTTGGAGATTGCCTA
TTTGAAGAACCAGCTGCAAAACCGAGAAACGATTGAGTCTAGCCAGACCCGTGTGGTTCGATTCCGAAAAGAAGCCACAATGAAGGGGTCCCAAGAAAAATATAATTCCA
TTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGCAAAGAGTCCCGCCTATTTCGAGATAGTAAAAGAAATGTTAAG
TCTCAAAGGAAGAAGGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGAAAAGTGAAGATTTCTTTTGCCCTCCACCACCCATAACTTTGGCAGAATACTTCCC
AAGACGCTTTCTCGATGATAGTCAAGGAGAAGCCCTTGAAATCGTCACGTGTCACATTGTGGACATGGTGGAAGATGATGATGTCCCTGCTACTGTTGAGGATGTGAAGG
CATCTGACCTGAAAAAGGGTGAAACATCTACAAGCCTTGTGAAACCTAAAGTTGTAGAGGATGAGAAGTGTTCACCTGTCCTACGATACGTCCCTTTATCCCGGCGTAAA
AAGGGTGAATCACCTTTCACTGAATGTCCAAAAAACATAAAGAAGAAACTTCTAAAGGAAGGCTATAGTCTGCCTACGACGAGAAAAGAACTTGGATATAAGTCGCCCGA
GCCAGTTTGCATAACAAGAAAAGGGAAGGCGAAAGTGGCAGACATAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAGAAGAGAGCGTCGACCAACGAGCTT
CTGTTTTTAGGCACATCAGGCCACCAGTTGCTCGTGCTTCAGTCTTTCAGAGGATAATTGTGAATGAAACAGAGGAAGAAAGTGCACAACCTACCAATAGCTCCACTCGA
TCTTCAGTTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTGATGAAGGCAGTTGATGAAAGAGATTTGGAGATTGCCTA
TTTGAAGAACCAGCTGCAAAACCGAGAAACGATTGAGTCTAGCCAGACCCGTGTGGTTCGATTCCGAAAAGAAGCCACAATGAAGGGGTCCCAAGAAAAATATAATTCCA
TTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGCAAAGAGTCCCGCCTATTTCGAGATAGTAAAAGAAATGTTAAG
TCTCAAAGGAAGAAGGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGAAAAGTGAAGATTTCTTTTGCCCTCCACCACCCATAACTTTGGCAGAATACTTCCC
AAGACGCTTTCTCGATGATAGTCAAGGAGAAGCCCTTGAAATCGTCACGTGTCACATTGTGGACATGGTGGAAGATGATGATGTCCCTGCTACTGTTGAGGATGTGAAGG
CATCTGACCTGAAAAAGGGTGAAACATCTACAAGCCTTGTGAAACCTAAAGTTGTAGAGGATGAGAAGTGTTCACCTGTCCTACGATACGTCCCTTTATCCCGGCGTAAA
AAGGGTGAATCACCTTTCACTGAATGTCCAAAAAACATAAAGAAGAAACTTCTAAAGGAAGGCTATAGTCTGCCTACGACGAGAAAAGAACTTGGATATAAGTCGCCCGA
GCCAGTTTGCATAACAAGAAAAGGGAAGGCGAAAGTGGCAGACATAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAGAAGAGAGCGTCGACCAACGAGCTT
CTGTTTTTAGGCACATCAGGCCACCAGTTGCTCGTGCTTCAGTCTTTCAGAGGATAATTGTGAATGAAACAGAGGAAGAAAGTGCACAACCTACCAATAGCTCCACTCGA
TCTTCAGTTTTTTGA
Protein sequenceShow/hide protein sequence
MSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETIESSQTRVVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDSKRNVK
SQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPATVEDVKASDLKKGETSTSLVKPKVVEDEKCSPVLRYVPLSRRK
KGESPFTECPKNIKKKLLKEGYSLPTTRKELGYKSPEPVCITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRHIRPPVARASVFQRIIVNETEEESAQPTNSSTR
SSVF