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Spg031068 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031068
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S13
Genome locationscaffold11:10398197..10403831
RNA-Seq ExpressionSpg031068
SyntenySpg031068
Gene Ontology termsGO:0009058 - biosynthetic process (biological process)
GO:0008909 - isochorismate synthase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022932292.1 isochorismate synthase 2, chloroplastic-like isoform X1 [Cucurbita moschata]2.1e-0565.96Show/hide
Query:  GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHV
        GA ET++TR+FP V T  LAT++LRG VAKLKS+ P+FSSGIIRL +
Subjt:  GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHV

XP_022972451.1 isochorismate synthase 2, chloroplastic isoform X1 [Cucurbita maxima]1.6e-0553.23Show/hide
Query:  GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHVFLLLTKQKMRALCAK
        GA ET++TR+FP V T  LAT++LRG VAKLKS+ P+FSSGIIRL + +    + +  LC++
Subjt:  GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHVFLLLTKQKMRALCAK

XP_022972460.1 isochorismate synthase 2, chloroplastic isoform X2 [Cucurbita maxima]1.6e-0553.23Show/hide
Query:  GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHVFLLLTKQKMRALCAK
        GA ET++TR+FP V T  LAT++LRG VAKLKS+ P+FSSGIIRL + +    + +  LC++
Subjt:  GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHVFLLLTKQKMRALCAK

XP_022972468.1 isochorismate synthase 1, chloroplastic isoform X3 [Cucurbita maxima]1.6e-0553.23Show/hide
Query:  GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHVFLLLTKQKMRALCAK
        GA ET++TR+FP V T  LAT++LRG VAKLKS+ P+FSSGIIRL + +    + +  LC++
Subjt:  GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHVFLLLTKQKMRALCAK

XP_023530898.1 isochorismate synthase 2, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo]2.1e-0565.96Show/hide
Query:  GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHV
        GA ET++TR+FP V T  LAT++LRG VAKLKS+ P+FSSGIIRL +
Subjt:  GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHV

TrEMBL top hitse value%identityAlignment
A0A6J1EW06 isochorismate synthase 2, chloroplastic-like isoform X31.0e-0565.96Show/hide
Query:  GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHV
        GA ET++TR+FP V T  LAT++LRG VAKLKS+ P+FSSGIIRL +
Subjt:  GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHV

A0A6J1EW89 Isochorismate synthase1.0e-0565.96Show/hide
Query:  GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHV
        GA ET++TR+FP V T  LAT++LRG VAKLKS+ P+FSSGIIRL +
Subjt:  GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHV

A0A6J1I605 Isochorismate synthase7.8e-0653.23Show/hide
Query:  GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHVFLLLTKQKMRALCAK
        GA ET++TR+FP V T  LAT++LRG VAKLKS+ P+FSSGIIRL + +    + +  LC++
Subjt:  GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHVFLLLTKQKMRALCAK

A0A6J1I8P4 Isochorismate synthase7.8e-0653.23Show/hide
Query:  GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHVFLLLTKQKMRALCAK
        GA ET++TR+FP V T  LAT++LRG VAKLKS+ P+FSSGIIRL + +    + +  LC++
Subjt:  GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHVFLLLTKQKMRALCAK

A0A6J1IA15 isochorismate synthase 1, chloroplastic isoform X37.8e-0653.23Show/hide
Query:  GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHVFLLLTKQKMRALCAK
        GA ET++TR+FP V T  LAT++LRG VAKLKS+ P+FSSGIIRL + +    + +  LC++
Subjt:  GAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHVFLLLTKQKMRALCAK

SwissProt top hitse value%identityAlignment
P46298 40S ribosomal protein S133.4e-0659.26Show/hide
Query:  VKSVIGSKILRILKAHGLAPEISEDLYRPWKVRLVAEISVRRSWKVRIHHLQRF
        VKSV GSKILRILKAHGLAPEI EDLY   K      +S+R+       HL+RF
Subjt:  VKSVIGSKILRILKAHGLAPEISEDLYRPWKVRLVAEISVRRSWKVRIHHLQRF

P59223 40S ribosomal protein S13-14.4e-0648.53Show/hide
Query:  VKSVIGSKILRILKAHGLAPEISEDLYRPWK--VRLVAEISVRRSWKVRIHHLQRFDTRLEIFGRFYE
        VKSV GSKILRILKAHGLAPEI EDLY   K  V +   +   R  K     L   ++R+    R+Y+
Subjt:  VKSVIGSKILRILKAHGLAPEISEDLYRPWK--VRLVAEISVRRSWKVRIHHLQRFDTRLEIFGRFYE

P59224 40S ribosomal protein S13-24.4e-0648.53Show/hide
Query:  VKSVIGSKILRILKAHGLAPEISEDLYRPWK--VRLVAEISVRRSWKVRIHHLQRFDTRLEIFGRFYE
        VKSV GSKILRILKAHGLAPEI EDLY   K  V +   +   R  K     L   ++R+    R+Y+
Subjt:  VKSVIGSKILRILKAHGLAPEISEDLYRPWK--VRLVAEISVRRSWKVRIHHLQRFDTRLEIFGRFYE

Q69UI1 40S ribosomal protein S13-29.8e-0648.53Show/hide
Query:  VKSVIGSKILRILKAHGLAPEISEDLYRPWK--VRLVAEISVRRSWKVRIHHLQRFDTRLEIFGRFYE
        VKSV GSKILRILKAHGLAPEI EDLY   K  V +   +   R  K     L   ++R+    R+Y+
Subjt:  VKSVIGSKILRILKAHGLAPEISEDLYRPWK--VRLVAEISVRRSWKVRIHHLQRFDTRLEIFGRFYE

Q69UI2 40S ribosomal protein S13-19.8e-0648.53Show/hide
Query:  VKSVIGSKILRILKAHGLAPEISEDLYRPWK--VRLVAEISVRRSWKVRIHHLQRFDTRLEIFGRFYE
        VKSV GSKILRILKAHGLAPEI EDLY   K  V +   +   R  K     L   ++R+    R+Y+
Subjt:  VKSVIGSKILRILKAHGLAPEISEDLYRPWK--VRLVAEISVRRSWKVRIHHLQRFDTRLEIFGRFYE

Arabidopsis top hitse value%identityAlignment
AT1G74710.1 ADC synthase superfamily protein9.4e-0448.84Show/hide
Query:  TIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHV
        T++TR+   V + A AT+ L   V++LKS  PSFSSG++RL V
Subjt:  TIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHV

AT1G74710.2 ADC synthase superfamily protein9.4e-0448.84Show/hide
Query:  TIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHV
        T++TR+   V + A AT+ L   V++LKS  PSFSSG++RL V
Subjt:  TIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHV

AT3G60770.1 Ribosomal protein S13/S153.1e-0748.53Show/hide
Query:  VKSVIGSKILRILKAHGLAPEISEDLYRPWK--VRLVAEISVRRSWKVRIHHLQRFDTRLEIFGRFYE
        VKSV GSKILRILKAHGLAPEI EDLY   K  V +   +   R  K     L   ++R+    R+Y+
Subjt:  VKSVIGSKILRILKAHGLAPEISEDLYRPWK--VRLVAEISVRRSWKVRIHHLQRFDTRLEIFGRFYE

AT4G00100.1 ribosomal protein S13A3.1e-0748.53Show/hide
Query:  VKSVIGSKILRILKAHGLAPEISEDLYRPWK--VRLVAEISVRRSWKVRIHHLQRFDTRLEIFGRFYE
        VKSV GSKILRILKAHGLAPEI EDLY   K  V +   +   R  K     L   ++R+    R+Y+
Subjt:  VKSVIGSKILRILKAHGLAPEISEDLYRPWK--VRLVAEISVRRSWKVRIHHLQRFDTRLEIFGRFYE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGCAGAGGAGACGATTAAGACTCGCAGTTTTCCGACAGTTCAGACAGAGGCTTTGGCAACGAAGAGTCTGAGGGGAGAAGTGGCAAAGTTGAAGTCTGATGCACC
GTCATTTAGTTCTGGAATTATTCGACTACATGTATTTCTTTTATTAACAAAGCAGAAGATGAGGGCATTGTGTGCGAAAAGGATGAAAGGTGGCATTTTTGTAAATATTT
TGAAATTGGAGCAAAACCCTAAGCCTTCATTCTTTTTATTTAAAGCTGCACGGAGCCCGAGGAGAAGCCATGAAGCCAAGCCATCTTTCTTCTTCTTCCTTCTCTCCCTA
AAACCCACGACCGGCAGCCTCCATTCCCTTCCTCTTCTTCGATTTCGACCAACCGTCTTCACCTCCCTCCACGACTCCTCCTCCGGCAAGCTCGGGACCACGACGGCGGC
GCGCGTTCCTCCAGCAAGTTTCGCGACGGCAGCAGCGTTAGGAGACAGTTCTTGCAGTGTCTCGCTCGTTTTCTCTCCGGCAGTACAGCGGCGCGGCGCCGCGGCGCGAC
GGGTCTTCTCCTTTAGCAGCAGCTCGCGGTTCAGGTGGCGGTGTTGGTGTGCGGCTGCGGCGGTGCGACGCGATTTCCGGCGGCAGCAGTGTGTAGGTGGTTGCAACAAG
GGTTGTTTTCCGGCGAACAACTGCTGTTGGGTAGTTTTCCAGCAAGATTCCGACACTTTTGGGCGATTTTCCTCCTTGGTACCATCGCAAGGGACTTTGGGGGAACACCA
TTGGGTGAAAAGTGTAATTGGGAGCAAGATCTTGCGTATATTGAAGGCTCATGGGCTAGCTCCTGAAATCTCAGAGGATCTTTACCGACCTTGGAAGGTGAGGTTGGTTG
CCGAGATTAGTGTGAGAAGGTCTTGGAAGGTAAGAATCCATCATCTTCAGAGATTTGATACCAGATTGGAGATTTTCGGACGATTCTATGAAGATCTTGTGAATCTCGTT
ATTCTGTCGGAAAGCCCAGTTGCGGCTGCATATCGAGCGCATTTCCTTCTGGCTTTGACAAGTCTGTCTTCAGCTAGAGCTACTTTTCTTATATGGCTTGCGGGCGTATT
TTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGCAGAGGAGACGATTAAGACTCGCAGTTTTCCGACAGTTCAGACAGAGGCTTTGGCAACGAAGAGTCTGAGGGGAGAAGTGGCAAAGTTGAAGTCTGATGCACC
GTCATTTAGTTCTGGAATTATTCGACTACATGTATTTCTTTTATTAACAAAGCAGAAGATGAGGGCATTGTGTGCGAAAAGGATGAAAGGTGGCATTTTTGTAAATATTT
TGAAATTGGAGCAAAACCCTAAGCCTTCATTCTTTTTATTTAAAGCTGCACGGAGCCCGAGGAGAAGCCATGAAGCCAAGCCATCTTTCTTCTTCTTCCTTCTCTCCCTA
AAACCCACGACCGGCAGCCTCCATTCCCTTCCTCTTCTTCGATTTCGACCAACCGTCTTCACCTCCCTCCACGACTCCTCCTCCGGCAAGCTCGGGACCACGACGGCGGC
GCGCGTTCCTCCAGCAAGTTTCGCGACGGCAGCAGCGTTAGGAGACAGTTCTTGCAGTGTCTCGCTCGTTTTCTCTCCGGCAGTACAGCGGCGCGGCGCCGCGGCGCGAC
GGGTCTTCTCCTTTAGCAGCAGCTCGCGGTTCAGGTGGCGGTGTTGGTGTGCGGCTGCGGCGGTGCGACGCGATTTCCGGCGGCAGCAGTGTGTAGGTGGTTGCAACAAG
GGTTGTTTTCCGGCGAACAACTGCTGTTGGGTAGTTTTCCAGCAAGATTCCGACACTTTTGGGCGATTTTCCTCCTTGGTACCATCGCAAGGGACTTTGGGGGAACACCA
TTGGGTGAAAAGTGTAATTGGGAGCAAGATCTTGCGTATATTGAAGGCTCATGGGCTAGCTCCTGAAATCTCAGAGGATCTTTACCGACCTTGGAAGGTGAGGTTGGTTG
CCGAGATTAGTGTGAGAAGGTCTTGGAAGGTAAGAATCCATCATCTTCAGAGATTTGATACCAGATTGGAGATTTTCGGACGATTCTATGAAGATCTTGTGAATCTCGTT
ATTCTGTCGGAAAGCCCAGTTGCGGCTGCATATCGAGCGCATTTCCTTCTGGCTTTGACAAGTCTGTCTTCAGCTAGAGCTACTTTTCTTATATGGCTTGCGGGCGTATT
TTGA
Protein sequenceShow/hide protein sequence
MGAEETIKTRSFPTVQTEALATKSLRGEVAKLKSDAPSFSSGIIRLHVFLLLTKQKMRALCAKRMKGGIFVNILKLEQNPKPSFFLFKAARSPRRSHEAKPSFFFFLLSL
KPTTGSLHSLPLLRFRPTVFTSLHDSSSGKLGTTTAARVPPASFATAAALGDSSCSVSLVFSPAVQRRGAAARRVFSFSSSSRFRWRCWCAAAAVRRDFRRQQCVGGCNK
GCFPANNCCWVVFQQDSDTFGRFSSLVPSQGTLGEHHWVKSVIGSKILRILKAHGLAPEISEDLYRPWKVRLVAEISVRRSWKVRIHHLQRFDTRLEIFGRFYEDLVNLV
ILSESPVAAAYRAHFLLALTSLSSARATFLIWLAGVF