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Spg031080 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031080
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold11:9981519..9982662
RNA-Seq ExpressionSpg031080
SyntenySpg031080
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH00303.1 Ribonuclease H-like superfamily protein [Prunus dulcis]2.1e-0636.89Show/hide
Query:  MKLNADASWFASSNSGGLGWVIRDSTGSLRAGGSLKIYSCNSIVFIEACAIREGMRNYLSMFNFDPPDLIVESDSKDLINLLNRSAIDLSESLSVVEDIF
        +KLN D +W A +  GG+GWV+RD  G   + G      C S +  EA A+RE +   L +  FD   + VESDS  LI +LN+  +   E   ++ D+ 
Subjt:  MKLNADASWFASSNSGGLGWVIRDSTGSLRAGGSLKIYSCNSIVFIEACAIREGMRNYLSMFNFDPPDLIVESDSKDLINLLNRSAIDLSESLSVVEDIF

Query:  VLS
         LS
Subjt:  VLS

CAB4274760.1 unnamed protein product [Prunus armeniaca]4.7e-0640.4Show/hide
Query:  MKLNADASWFASSNSGGLGWVIRDSTGSLRAGGSLKIYSCNSIVFIEACAIREGMRNYLSMFNFDPPDLIVESDSKDLINLLNRSAIDLSESLSVVEDI
        +K+N DA+W A    GG+GWVIRDS G L   G       +S + +E  AIR  +       NF   D+IVESDS+  I +LN  A   S+   +V DI
Subjt:  MKLNADASWFASSNSGGLGWVIRDSTGSLRAGGSLKIYSCNSIVFIEACAIREGMRNYLSMFNFDPPDLIVESDSKDLINLLNRSAIDLSESLSVVEDI

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.2e-0632.76Show/hide
Query:  KLNADASWFASSNSGGLGWVIRDSTGSLRAGGSLKIYSCNSIVFIEACAIREGMRNYLSMFNFDPPDLIVESDSKDLINLLNRSAIDLSESLSVVEDIFV
        KLN +A+W A +N+GG+GW++RD  G +       I +  +I ++E  AI EG+R   ++       + +ESDS + I+LL+R   D +E + ++E+I+ 
Subjt:  KLNADASWFASSNSGGLGWVIRDSTGSLRAGGSLKIYSCNSIVFIEACAIREGMRNYLSMFNFDPPDLIVESDSKDLINLLNRSAIDLSESLSVVEDIFV

Query:  L--SLKIGGRRHTSQD
        +   ++I   RH S++
Subjt:  L--SLKIGGRRHTSQD

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.9e-1042Show/hide
Query:  LNADASWFASSNSGGLGWVIRDSTGSLRAGGSLKIYSCNSIVFIEACAIREGMRNYLSMFNFDPPDLIVESDSKDLINLLNRSAIDLSESLSVVEDIFVL
        LNADASW  S++ GG+GW+IR   G +   G+  + +CN++  +EA AI EG+RN  ++    P  L +E+DS ++ +LLNR   DL+++  VVE+I  L
Subjt:  LNADASWFASSNSGGLGWVIRDSTGSLRAGGSLKIYSCNSIVFIEACAIREGMRNYLSMFNFDPPDLIVESDSKDLINLLNRSAIDLSESLSVVEDIFVL

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]7.3e-0733.33Show/hide
Query:  KLNADASWFASSNSGGLGWVIRDSTGSLRAGGSLKIYSCNSIVFIEACAIREGMR-------NYLSMFNFDPPDLIVESDSKDLINLLNRSAIDLSESLS
        KLN DA+W A +N+GG+GW++RD  G +       I +  +I ++E  AI EG+R         +   +  P  + +ESDS + I+LL+R   D +E + 
Subjt:  KLNADASWFASSNSGGLGWVIRDSTGSLRAGGSLKIYSCNSIVFIEACAIREGMR-------NYLSMFNFDPPDLIVESDSKDLINLLNRSAIDLSESLS

Query:  VVEDIFVL--SLKIGGRRHTSQD
        ++E+I+ +   +KI   RH S++
Subjt:  VVEDIFVL--SLKIGGRRHTSQD

TrEMBL top hitse value%identityAlignment
A0A4Y1R838 Ribonuclease H-like superfamily protein1.0e-0636.89Show/hide
Query:  MKLNADASWFASSNSGGLGWVIRDSTGSLRAGGSLKIYSCNSIVFIEACAIREGMRNYLSMFNFDPPDLIVESDSKDLINLLNRSAIDLSESLSVVEDIF
        +KLN D +W A +  GG+GWV+RD  G   + G      C S +  EA A+RE +   L +  FD   + VESDS  LI +LN+  +   E   ++ D+ 
Subjt:  MKLNADASWFASSNSGGLGWVIRDSTGSLRAGGSLKIYSCNSIVFIEACAIREGMRNYLSMFNFDPPDLIVESDSKDLINLLNRSAIDLSESLSVVEDIF

Query:  VLS
         LS
Subjt:  VLS

A0A6J1CP26 uncharacterized protein LOC1110134126.0e-0732.76Show/hide
Query:  KLNADASWFASSNSGGLGWVIRDSTGSLRAGGSLKIYSCNSIVFIEACAIREGMRNYLSMFNFDPPDLIVESDSKDLINLLNRSAIDLSESLSVVEDIFV
        KLN +A+W A +N+GG+GW++RD  G +       I +  +I ++E  AI EG+R   ++       + +ESDS + I+LL+R   D +E + ++E+I+ 
Subjt:  KLNADASWFASSNSGGLGWVIRDSTGSLRAGGSLKIYSCNSIVFIEACAIREGMRNYLSMFNFDPPDLIVESDSKDLINLLNRSAIDLSESLSVVEDIFV

Query:  L--SLKIGGRRHTSQD
        +   ++I   RH S++
Subjt:  L--SLKIGGRRHTSQD

A0A6J1DNV9 uncharacterized protein LOC1110224039.0e-1142Show/hide
Query:  LNADASWFASSNSGGLGWVIRDSTGSLRAGGSLKIYSCNSIVFIEACAIREGMRNYLSMFNFDPPDLIVESDSKDLINLLNRSAIDLSESLSVVEDIFVL
        LNADASW  S++ GG+GW+IR   G +   G+  + +CN++  +EA AI EG+RN  ++    P  L +E+DS ++ +LLNR   DL+++  VVE+I  L
Subjt:  LNADASWFASSNSGGLGWVIRDSTGSLRAGGSLKIYSCNSIVFIEACAIREGMRNYLSMFNFDPPDLIVESDSKDLINLLNRSAIDLSESLSVVEDIFVL

A0A6J1DSV1 uncharacterized protein LOC1110236083.5e-0733.33Show/hide
Query:  KLNADASWFASSNSGGLGWVIRDSTGSLRAGGSLKIYSCNSIVFIEACAIREGMR-------NYLSMFNFDPPDLIVESDSKDLINLLNRSAIDLSESLS
        KLN DA+W A +N+GG+GW++RD  G +       I +  +I ++E  AI EG+R         +   +  P  + +ESDS + I+LL+R   D +E + 
Subjt:  KLNADASWFASSNSGGLGWVIRDSTGSLRAGGSLKIYSCNSIVFIEACAIREGMR-------NYLSMFNFDPPDLIVESDSKDLINLLNRSAIDLSESLS

Query:  VVEDIFVL--SLKIGGRRHTSQD
        ++E+I+ +   +KI   RH S++
Subjt:  VVEDIFVL--SLKIGGRRHTSQD

A0A6J5WPU6 Reverse transcriptase domain-containing protein2.3e-0640.4Show/hide
Query:  MKLNADASWFASSNSGGLGWVIRDSTGSLRAGGSLKIYSCNSIVFIEACAIREGMRNYLSMFNFDPPDLIVESDSKDLINLLNRSAIDLSESLSVVEDI
        +K+N DA+W A    GG+GWVIRDS G L   G       +S + +E  AIR  +       NF   D+IVESDS+  I +LN  A   S+   +V DI
Subjt:  MKLNADASWFASSNSGGLGWVIRDSTGSLRAGGSLKIYSCNSIVFIEACAIREGMRNYLSMFNFDPPDLIVESDSKDLINLLNRSAIDLSESLSVVEDI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein8.6e-0633.33Show/hide
Query:  MKLNADASWFASSNSGGLGWVIRDSTGSLRAGGSLKIYSCNSIVFIEACAIREGMRNYLSMFNFDPPDLIVESDSKDLINLLNRSAI
        +K N DA+W   +   G+GWV+R+  G ++  G+  +    S++  E  A+R  +   LS+  F    +I ESDS+ LI +LN   I
Subjt:  MKLNADASWFASSNSGGLGWVIRDSTGSLRAGGSLKIYSCNSIVFIEACAIREGMRNYLSMFNFDPPDLIVESDSKDLINLLNRSAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCTGAATGCAGACGCCTCTTGGTTTGCCTCTTCGAATTCTGGTGGGTTGGGTTGGGTGATTCGTGACTCCACAGGATCTCTTCGGGCAGGTGGGTCTTTGAAGAT
ATATTCGTGCAACTCAATCGTGTTTATCGAAGCTTGCGCGATCAGAGAGGGTATGAGAAATTACCTTTCGATGTTCAATTTTGATCCCCCAGACCTGATTGTTGAGTCCG
ACTCCAAGGACCTGATCAATTTGCTCAATCGATCGGCGATTGATCTCTCCGAATCCCTATCTGTGGTGGAGGATATTTTTGTTCTGTCTTTGAAGATTGGGGGACGCAGA
CACACATCCCAAGACGATCAAGAGACAGACAAGACGGATGAAAGGACAACGCTGACACAACTAACGCAAGTAACGCATGCGGACATCTCTAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGCTGAATGCAGACGCCTCTTGGTTTGCCTCTTCGAATTCTGGTGGGTTGGGTTGGGTGATTCGTGACTCCACAGGATCTCTTCGGGCAGGTGGGTCTTTGAAGAT
ATATTCGTGCAACTCAATCGTGTTTATCGAAGCTTGCGCGATCAGAGAGGGTATGAGAAATTACCTTTCGATGTTCAATTTTGATCCCCCAGACCTGATTGTTGAGTCCG
ACTCCAAGGACCTGATCAATTTGCTCAATCGATCGGCGATTGATCTCTCCGAATCCCTATCTGTGGTGGAGGATATTTTTGTTCTGTCTTTGAAGATTGGGGGACGCAGA
CACACATCCCAAGACGATCAAGAGACAGACAAGACGGATGAAAGGACAACGCTGACACAACTAACGCAAGTAACGCATGCGGACATCTCTAAGTAG
Protein sequenceShow/hide protein sequence
MKLNADASWFASSNSGGLGWVIRDSTGSLRAGGSLKIYSCNSIVFIEACAIREGMRNYLSMFNFDPPDLIVESDSKDLINLLNRSAIDLSESLSVVEDIFVLSLKIGGRR
HTSQDDQETDKTDERTTLTQLTQVTHADISK