; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg031086 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031086
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionATP-dependent RNA helicase DBP3-like
Genome locationscaffold11:10643898..10644173
RNA-Seq ExpressionSpg031086
SyntenySpg031086
Gene Ontology termsGO:0004386 - helicase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6580907.1 hypothetical protein SDJN03_20909, partial [Cucurbita argyrosperma subsp. sororia]6.2e-0768.92Show/hide
Query:  HDGEDRESGSLVERMKEKIHGYKEKKKEKRKERKEKKEKQKKEKENQKKSKHKEEED-GGDSSSSDSDSGGGSD
        H+GE+++ G +VERMKEKIHGYKEKK+EKRK+RKEKKE++KKE+      K KEEED GG SS SDS+SGGGSD
Subjt:  HDGEDRESGSLVERMKEKIHGYKEKKKEKRKERKEKKEKQKKEKENQKKSKHKEEED-GGDSSSSDSDSGGGSD

XP_016899655.1 PREDICTED: ATP-dependent RNA helicase DBP3-like [Cucumis melo]7.5e-1367.74Show/hide
Query:  MSRVMKKIEETLHGHQKQHDGED-RESGSLVERMKEKIHGYKEKKKEKRKERKEKKEKQKKEKENQKKSKHKEEEDGGDSSSSDS-DSGGGSD
        M+ +MKKI+ET+  H+KQHDGE+  E G +VE+MKEKIHGYKEK KEK+K+RKE+KE  KKEKE +KK+K K EEDGG+SS  DS DSGGGSD
Subjt:  MSRVMKKIEETLHGHQKQHDGED-RESGSLVERMKEKIHGYKEKKKEKRKERKEKKEKQKKEKENQKKSKHKEEEDGGDSSSSDS-DSGGGSD

XP_031737596.1 dehydrin HIRD11-like [Cucumis sativus]1.2e-1065.31Show/hide
Query:  MSRVMKKIEETLHGHQKQHDGED--RESGSLVERMKEKIHGYKEKKKEK---RKERKEKKEKQKKEKE-NQKKSKHKEEEDGGDSSSSDS-DSGGGSD
        M+ +MKKI+ET+  H+KQHDGE+   E   +VE+MKEKIHGYKEK KEK   RKERKEKKEK+KKEK+  QK  + +EEEDGG+SS  DS DSGGGSD
Subjt:  MSRVMKKIEETLHGHQKQHDGED--RESGSLVERMKEKIHGYKEKKKEK---RKERKEKKEKQKKEKE-NQKKSKHKEEEDGGDSSSSDS-DSGGGSD

TrEMBL top hitse value%identityAlignment
A0A0A0LCI3 Uncharacterized protein5.8e-1165.31Show/hide
Query:  MSRVMKKIEETLHGHQKQHDGED--RESGSLVERMKEKIHGYKEKKKEK---RKERKEKKEKQKKEKE-NQKKSKHKEEEDGGDSSSSDS-DSGGGSD
        M+ +MKKI+ET+  H+KQHDGE+   E   +VE+MKEKIHGYKEK KEK   RKERKEKKEK+KKEK+  QK  + +EEEDGG+SS  DS DSGGGSD
Subjt:  MSRVMKKIEETLHGHQKQHDGED--RESGSLVERMKEKIHGYKEKKKEK---RKERKEKKEKQKKEKE-NQKKSKHKEEEDGGDSSSSDS-DSGGGSD

A0A1S4DVB9 ATP-dependent RNA helicase DBP3-like3.6e-1367.74Show/hide
Query:  MSRVMKKIEETLHGHQKQHDGED-RESGSLVERMKEKIHGYKEKKKEKRKERKEKKEKQKKEKENQKKSKHKEEEDGGDSSSSDS-DSGGGSD
        M+ +MKKI+ET+  H+KQHDGE+  E G +VE+MKEKIHGYKEK KEK+K+RKE+KE  KKEKE +KK+K K EEDGG+SS  DS DSGGGSD
Subjt:  MSRVMKKIEETLHGHQKQHDGED-RESGSLVERMKEKIHGYKEKKKEKRKERKEKKEKQKKEKENQKKSKHKEEEDGGDSSSSDS-DSGGGSD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAGAGTAATGAAGAAGATCGAAGAAACCCTACATGGCCATCAGAAGCAACACGATGGAGAAGATAGAGAAAGCGGCAGCCTGGTGGAGAGGATGAAGGAGAAGAT
TCATGGTTATAAGGAGAAGAAGAAAGAGAAGCGAAAGGAGAGGAAGGAAAAGAAGGAGAAACAGAAGAAAGAAAAAGAAAACCAGAAAAAAAGCAAACACAAAGAAGAAG
AAGATGGCGGTGACAGCAGCTCCAGCGACAGCGACAGCGGCGGTGGTAGCGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAAGAGTAATGAAGAAGATCGAAGAAACCCTACATGGCCATCAGAAGCAACACGATGGAGAAGATAGAGAAAGCGGCAGCCTGGTGGAGAGGATGAAGGAGAAGAT
TCATGGTTATAAGGAGAAGAAGAAAGAGAAGCGAAAGGAGAGGAAGGAAAAGAAGGAGAAACAGAAGAAAGAAAAAGAAAACCAGAAAAAAAGCAAACACAAAGAAGAAG
AAGATGGCGGTGACAGCAGCTCCAGCGACAGCGACAGCGGCGGTGGTAGCGACTAG
Protein sequenceShow/hide protein sequence
MSRVMKKIEETLHGHQKQHDGEDRESGSLVERMKEKIHGYKEKKKEKRKERKEKKEKQKKEKENQKKSKHKEEEDGGDSSSSDSDSGGGSD