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Spg031088 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031088
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold11:10670764..10671304
RNA-Seq ExpressionSpg031088
SyntenySpg031088
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4279811.1 unnamed protein product [Prunus armeniaca]4.5e-0433.6Show/hide
Query:  MNSDAAWFEASNVGGVGWIIRDSDGSLVGAGCKRIVRKSEIKMMEITAI--------------IEVDNSELSLL--------ID---EVIGLASKAGIIQ
        +N DAAW   + +GGVGW++RDS G +V AGCK  +R      ME  AI              +EV++  L L+        ID   E I    K  + Q
Subjt:  MNSDAAWFEASNVGGVGWIIRDSDGSLVGAGCKRIVRKSEIKMMEITAI--------------IEVDNSELSLL--------ID---EVIGLASKAGIIQ

Query:  FSFC-----SRESNSLAHSLTRMAS
        F  C      R  N  AH +T   S
Subjt:  FSFC-----SRESNSLAHSLTRMAS

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.4e-0528.12Show/hide
Query:  MNSDAAWFEASNVGGVGWIIRDSDGSLVGAGCKRIVRKSEIKMMEITAIIE------------------------------VDNSELSLLIDEVIGLASK
        +N++AAW   +N GG+GWI+RD  G ++ A C+ I  +  I  +E+ AI E                               D +E+  L++E+  +   
Subjt:  MNSDAAWFEASNVGGVGWIIRDSDGSLVGAGCKRIVRKSEIKMMEITAIIE------------------------------VDNSELSLLIDEVIGLASK

Query:  AGIIQFSFCSRESNSLAHSLTRMASVSD
          I+     SRE+N +AH L R A  +D
Subjt:  AGIIQFSFCSRESNSLAHSLTRMASVSD

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]7.4e-0729.63Show/hide
Query:  MNSDAAWFEASNVGGVGWIIRDSDGSLVGAGCKRIVRKSEIKMMEITAI-----------------IEVDNSELSLL--------------IDEVIGLAS
        +N+DA+W ++++ GG+GWIIR  DG +V AG + +   + +K++E +AI                 IE D++E+  L              ++E++ L  
Subjt:  MNSDAAWFEASNVGGVGWIIRDSDGSLVGAGCKRIVRKSEIKMMEITAI-----------------IEVDNSELSLL--------------IDEVIGLAS

Query:  KAGIIQFSFCSRESNSLAHSLTRMASVSDDFVFFV
           I+ F+   RE+N  AHSL + ASV  + + +V
Subjt:  KAGIIQFSFCSRESNSLAHSLTRMASVSDDFVFFV

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]4.0e-0527.21Show/hide
Query:  MNSDAAWFEASNVGGVGWIIRDSDGSLVGAGCKRIVRKSEIKMMEITAIIE--------------------------------------VDNSELSLLID
        +N+DAAW   +N GG+GWI+RD  G ++ A C+ I  +  I  +E+ AI E                                       D +E+  L++
Subjt:  MNSDAAWFEASNVGGVGWIIRDSDGSLVGAGCKRIVRKSEIKMMEITAIIE--------------------------------------VDNSELSLLID

Query:  EVIGLASKAGIIQFSFCSRESNSLAHSLTRMASVSD
        E+  +     I+     SRE+N +AH L R A  +D
Subjt:  EVIGLASKAGIIQFSFCSRESNSLAHSLTRMASVSD

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134126.7e-0628.12Show/hide
Query:  MNSDAAWFEASNVGGVGWIIRDSDGSLVGAGCKRIVRKSEIKMMEITAIIE------------------------------VDNSELSLLIDEVIGLASK
        +N++AAW   +N GG+GWI+RD  G ++ A C+ I  +  I  +E+ AI E                               D +E+  L++E+  +   
Subjt:  MNSDAAWFEASNVGGVGWIIRDSDGSLVGAGCKRIVRKSEIKMMEITAIIE------------------------------VDNSELSLLIDEVIGLASK

Query:  AGIIQFSFCSRESNSLAHSLTRMASVSD
          I+     SRE+N +AH L R A  +D
Subjt:  AGIIQFSFCSRESNSLAHSLTRMASVSD

A0A6J1D4B6 uncharacterized protein LOC1110171816.3e-0428.18Show/hide
Query:  MNSDAAWFEASNVGGVGWIIRDSDGSLVGAGCKRIVRKS-----------EIKMMEITAIIEVDN---SELSLLIDEVIGLASKAGIIQFSFCSRESNSL
        +N DA W ++ + GG+GWI+RDS+G  + A C + + +S           E   +E+  II   +   +E+SL+++++        I  F     ++N +
Subjt:  MNSDAAWFEASNVGGVGWIIRDSDGSLVGAGCKRIVRKS-----------EIKMMEITAIIEVDN---SELSLLIDEVIGLASKAGIIQFSFCSRESNSL

Query:  AHSLTRMASV
        AH + R A V
Subjt:  AHSLTRMASV

A0A6J1DNV9 uncharacterized protein LOC1110224033.6e-0729.63Show/hide
Query:  MNSDAAWFEASNVGGVGWIIRDSDGSLVGAGCKRIVRKSEIKMMEITAI-----------------IEVDNSELSLL--------------IDEVIGLAS
        +N+DA+W ++++ GG+GWIIR  DG +V AG + +   + +K++E +AI                 IE D++E+  L              ++E++ L  
Subjt:  MNSDAAWFEASNVGGVGWIIRDSDGSLVGAGCKRIVRKSEIKMMEITAI-----------------IEVDNSELSLL--------------IDEVIGLAS

Query:  KAGIIQFSFCSRESNSLAHSLTRMASVSDDFVFFV
           I+ F+   RE+N  AHSL + ASV  + + +V
Subjt:  KAGIIQFSFCSRESNSLAHSLTRMASVSDDFVFFV

A0A6J1DSV1 uncharacterized protein LOC1110236082.0e-0527.21Show/hide
Query:  MNSDAAWFEASNVGGVGWIIRDSDGSLVGAGCKRIVRKSEIKMMEITAIIE--------------------------------------VDNSELSLLID
        +N+DAAW   +N GG+GWI+RD  G ++ A C+ I  +  I  +E+ AI E                                       D +E+  L++
Subjt:  MNSDAAWFEASNVGGVGWIIRDSDGSLVGAGCKRIVRKSEIKMMEITAIIE--------------------------------------VDNSELSLLID

Query:  EVIGLASKAGIIQFSFCSRESNSLAHSLTRMASVSD
        E+  +     I+     SRE+N +AH L R A  +D
Subjt:  EVIGLASKAGIIQFSFCSRESNSLAHSLTRMASVSD

A0A6J5UV01 Reverse transcriptase domain-containing protein2.2e-0433.6Show/hide
Query:  MNSDAAWFEASNVGGVGWIIRDSDGSLVGAGCKRIVRKSEIKMMEITAI--------------IEVDNSELSLL--------ID---EVIGLASKAGIIQ
        +N DAAW   + +GGVGW++RDS G +V AGCK  +R      ME  AI              +EV++  L L+        ID   E I    K  + Q
Subjt:  MNSDAAWFEASNVGGVGWIIRDSDGSLVGAGCKRIVRKSEIKMMEITAI--------------IEVDNSELSLL--------ID---EVIGLASKAGIIQ

Query:  FSFC-----SRESNSLAHSLTRMAS
        F  C      R  N  AH +T   S
Subjt:  FSFC-----SRESNSLAHSLTRMAS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTCGGACGCGGCATGGTTCGAGGCTTCTAACGTTGGAGGCGTGGGGTGGATCATTCGCGACTCAGACGGTTCTTTGGTAGGAGCGGGCTGCAAAAGAATTGTTAG
GAAATCAGAGATCAAGATGATGGAGATCACTGCGATCATCGAAGTGGACAACTCTGAGCTTTCGTTGCTGATTGACGAGGTTATCGGGTTGGCGAGTAAGGCGGGAATCA
TTCAGTTCTCCTTTTGTTCGAGAGAATCCAATAGCTTAGCGCACTCTCTTACGCGCATGGCGTCTGTTTCAGACGATTTTGTGTTTTTCGTTTTTGATCCTTCTCATTGC
TTGAGAACGGATGGCGCCACTTTTTGTGGTAGTTGCCCTGGGTGGTTAGACCCTTTAATGAAGGACGTAAATGTAGTTCCTTTCCCGTTTCCTGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACTCGGACGCGGCATGGTTCGAGGCTTCTAACGTTGGAGGCGTGGGGTGGATCATTCGCGACTCAGACGGTTCTTTGGTAGGAGCGGGCTGCAAAAGAATTGTTAG
GAAATCAGAGATCAAGATGATGGAGATCACTGCGATCATCGAAGTGGACAACTCTGAGCTTTCGTTGCTGATTGACGAGGTTATCGGGTTGGCGAGTAAGGCGGGAATCA
TTCAGTTCTCCTTTTGTTCGAGAGAATCCAATAGCTTAGCGCACTCTCTTACGCGCATGGCGTCTGTTTCAGACGATTTTGTGTTTTTCGTTTTTGATCCTTCTCATTGC
TTGAGAACGGATGGCGCCACTTTTTGTGGTAGTTGCCCTGGGTGGTTAGACCCTTTAATGAAGGACGTAAATGTAGTTCCTTTCCCGTTTCCTGTTTAA
Protein sequenceShow/hide protein sequence
MNSDAAWFEASNVGGVGWIIRDSDGSLVGAGCKRIVRKSEIKMMEITAIIEVDNSELSLLIDEVIGLASKAGIIQFSFCSRESNSLAHSLTRMASVSDDFVFFVFDPSHC
LRTDGATFCGSCPGWLDPLMKDVNVVPFPFPV