CuGenDBv2

Gene ID	Spg031103
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	zinc finger CCCH domain-containing protein 40-like
Genome location	scaffold8:30744185..30748230
RNA-Seq Expression	Spg031103
Synteny	Spg031103
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG8364056.1 hypothetical protein BUALT_Bualt19G0086400 [Buddleja alternifolia]

2.7e-05

40.86

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Query:  MPSLEPPEDESIRTLYIGGLDARVTENNNNEFQRNIRGKGPTTAHIYFEQTTLDESIPTLQDPLQQAHNLLGEKISKGIDKRQEETLNNMLLK
        MPSLEPPEDESIRTLYIGGLDARVTE    + + N    G                I +++  LQ+A   +     +G +K  EE  N +++K
Subjt:  MPSLEPPEDESIRTLYIGGLDARVTENNNNEFQRNIRGKGPTTAHIYFEQTTLDESIPTLQDPLQQAHNLLGEKISKGIDKRQEETLNNMLLK

XP_011092309.1 zinc finger CCCH domain-containing protein 49 [Sesamum indicum]

2.7e-05

39.78

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Query:  MPSLEPPEDESIRTLYIGGLDARVTENNNNEFQRNIRGKGPTTAHIYFEQTTLDESIPTLQDPLQQAHNLLGEKISKGIDKRQEETLNNMLLK
        MPSLEPPEDESIRTLY+GGLDARVTE    + + N    G                I +++  LQ+A   +     +G +K  EE  N +++K
Subjt:  MPSLEPPEDESIRTLYIGGLDARVTENNNNEFQRNIRGKGPTTAHIYFEQTTLDESIPTLQDPLQQAHNLLGEKISKGIDKRQEETLNNMLLK

XP_022964742.1 zinc finger CCCH domain-containing protein 40-like [Cucurbita moschata]

2.7e-05

39.78

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Query:  MPSLEPPEDESIRTLYIGGLDARVTENNNNEFQRNIRGKGPTTAHIYFEQTTLDESIPTLQDPLQQAHNLLGEKISKGIDKRQEETLNNMLLK
        MPSLEPPEDESIRTLY+GGLDARVTE    + + N    G                I +++  LQ+A   +     +G +K  EE  N +++K
Subjt:  MPSLEPPEDESIRTLYIGGLDARVTENNNNEFQRNIRGKGPTTAHIYFEQTTLDESIPTLQDPLQQAHNLLGEKISKGIDKRQEETLNNMLLK

XP_022970525.1 zinc finger CCCH domain-containing protein 40-like [Cucurbita maxima]

2.7e-05

39.78

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Query:  MPSLEPPEDESIRTLYIGGLDARVTENNNNEFQRNIRGKGPTTAHIYFEQTTLDESIPTLQDPLQQAHNLLGEKISKGIDKRQEETLNNMLLK
        MPSLEPPEDESIRTLY+GGLDARVTE    + + N    G                I +++  LQ+A   +     +G +K  EE  N +++K
Subjt:  MPSLEPPEDESIRTLYIGGLDARVTENNNNEFQRNIRGKGPTTAHIYFEQTTLDESIPTLQDPLQQAHNLLGEKISKGIDKRQEETLNNMLLK

XP_023520312.1 zinc finger CCCH domain-containing protein 40-like [Cucurbita pepo subsp. pepo]

2.7e-05

39.78

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Query:  MPSLEPPEDESIRTLYIGGLDARVTENNNNEFQRNIRGKGPTTAHIYFEQTTLDESIPTLQDPLQQAHNLLGEKISKGIDKRQEETLNNMLLK
        MPSLEPPEDESIRTLY+GGLDARVTE    + + N    G                I +++  LQ+A   +     +G +K  EE  N +++K
Subjt:  MPSLEPPEDESIRTLYIGGLDARVTENNNNEFQRNIRGKGPTTAHIYFEQTTLDESIPTLQDPLQQAHNLLGEKISKGIDKRQEETLNNMLLK

TrEMBL top hits

e value

%identity

Alignment

A0A6I9U5Q8 zinc finger CCCH domain-containing protein 49

1.3e-05

39.78

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Query:  MPSLEPPEDESIRTLYIGGLDARVTENNNNEFQRNIRGKGPTTAHIYFEQTTLDESIPTLQDPLQQAHNLLGEKISKGIDKRQEETLNNMLLK
        MPSLEPPEDESIRTLY+GGLDARVTE    + + N    G                I +++  LQ+A   +     +G +K  EE  N +++K
Subjt:  MPSLEPPEDESIRTLYIGGLDARVTENNNNEFQRNIRGKGPTTAHIYFEQTTLDESIPTLQDPLQQAHNLLGEKISKGIDKRQEETLNNMLLK

A0A6J1DLS8 zinc finger CCCH domain-containing protein 40-like

1.3e-05

39.78

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Query:  MPSLEPPEDESIRTLYIGGLDARVTENNNNEFQRNIRGKGPTTAHIYFEQTTLDESIPTLQDPLQQAHNLLGEKISKGIDKRQEETLNNMLLK
        MPSLEPPEDESIRTLY+GGLDARVTE    + + N    G                I +++  LQ+A   +     +G +K  EE  N +++K
Subjt:  MPSLEPPEDESIRTLYIGGLDARVTENNNNEFQRNIRGKGPTTAHIYFEQTTLDESIPTLQDPLQQAHNLLGEKISKGIDKRQEETLNNMLLK

A0A6J1HIK0 zinc finger CCCH domain-containing protein 40-like

1.3e-05

39.78

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Query:  MPSLEPPEDESIRTLYIGGLDARVTENNNNEFQRNIRGKGPTTAHIYFEQTTLDESIPTLQDPLQQAHNLLGEKISKGIDKRQEETLNNMLLK
        MPSLEPPEDESIRTLY+GGLDARVTE    + + N    G                I +++  LQ+A   +     +G +K  EE  N +++K
Subjt:  MPSLEPPEDESIRTLYIGGLDARVTENNNNEFQRNIRGKGPTTAHIYFEQTTLDESIPTLQDPLQQAHNLLGEKISKGIDKRQEETLNNMLLK

A0A6J1I340 zinc finger CCCH domain-containing protein 40-like

1.3e-05

39.78

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Query:  MPSLEPPEDESIRTLYIGGLDARVTENNNNEFQRNIRGKGPTTAHIYFEQTTLDESIPTLQDPLQQAHNLLGEKISKGIDKRQEETLNNMLLK
        MPSLEPPEDESIRTLY+GGLDARVTE    + + N    G                I +++  LQ+A   +     +G +K  EE  N +++K
Subjt:  MPSLEPPEDESIRTLYIGGLDARVTENNNNEFQRNIRGKGPTTAHIYFEQTTLDESIPTLQDPLQQAHNLLGEKISKGIDKRQEETLNNMLLK

A0A6P6WD77 zinc finger CCCH domain-containing protein 40-like

1.7e-05

37.63

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Query:  MPSLEPPEDESIRTLYIGGLDARVTENNNNEFQRNIRGKGPTTAHIYFEQTTLDESIPTLQDPLQQAHNLLGEKISKGIDKRQEETLNNMLLK
        MPSLEPPEDE+IRTLY+GGLDAR+TE +  +             H Y         I +++  LQ+A   +     +G +K  EE  N +++K
Subjt:  MPSLEPPEDESIRTLYIGGLDARVTENNNNEFQRNIRGKGPTTAHIYFEQTTLDESIPTLQDPLQQAHNLLGEKISKGIDKRQEETLNNMLLK

SwissProt top hits

e value

%identity

Alignment

Q5SNN4 Zinc finger CCCH domain-containing protein 40

1.3e-05

35.48

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Query:  MPSLEPPEDESIRTLYIGGLDARVTENNNNEFQRNIRGKGPTTAHIYFEQTTLDESIPTLQDPLQQAHNLLGEKISKGIDKRQEETLNNMLLK
        MPSL PP+DESIRTLYIGGL+ R+TE       +++R           +Q      I +++  LQ+A   +     +G +K  EE  N +++K
Subjt:  MPSLEPPEDESIRTLYIGGLDARVTENNNNEFQRNIRGKGPTTAHIYFEQTTLDESIPTLQDPLQQAHNLLGEKISKGIDKRQEETLNNMLLK

Q6Z358 Zinc finger CCCH domain-containing protein 49

3.9e-07

38.71

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Query:  MPSLEPPEDESIRTLYIGGLDARVTENNNNEFQRNIRGKGPTTAHIYFEQTTLDESIPTLQDPLQQAHNLLGEKISKGIDKRQEETLNNMLLK
        MPSL PP+DESIRTLYIGGLD+RVTE       +++R           +Q      I T++  LQ+A   +     +G +K  EE  N +++K
Subjt:  MPSLEPPEDESIRTLYIGGLDARVTENNNNEFQRNIRGKGPTTAHIYFEQTTLDESIPTLQDPLQQAHNLLGEKISKGIDKRQEETLNNMLLK

Arabidopsis top hits

e value

%identity

Alignment

AT2G29580.1 CCCH-type zinc fingerfamily protein with RNA-binding domain

5.4e-04

64.29

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Query:  MPSLEPPEDESIRTLYIGGLDARVTENN
        M +LE PED+SIRTLY+GGL++RV E +
Subjt:  MPSLEPPEDESIRTLYIGGLDARVTENN

AT5G07060.1 CCCH-type zinc fingerfamily protein with RNA-binding domain

1.1e-04

64.29

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Query:  MPSLEPPEDESIRTLYIGGLDARVTENN
        M +LEPPEDESI+TLY+GGL++R+ E +
Subjt:  MPSLEPPEDESIRTLYIGGLDARVTENN

AT5G07060.2 CCCH-type zinc fingerfamily protein with RNA-binding domain

1.1e-04

64.29

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Query:  MPSLEPPEDESIRTLYIGGLDARVTENN
        M +LEPPEDESI+TLY+GGL++R+ E +
Subjt:  MPSLEPPEDESIRTLYIGGLDARVTENN

Sequences

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CDS sequence

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ATGCCTTCCCTAGAACCTCCAGAGGATGAGAGTATTAGAACCTTGTATATAGGTGGACTTGATGCTCGAGTCACTGAAAACAACAATAATGAATTTCAGAGAAATATCAG
AGGCAAAGGTCCCACAACAGCACATATATATTTCGAGCAAACAACACTTGACGAATCAATTCCAACACTACAAGACCCATTACAACAGGCACATAACTTGTTGGGGGAGA
AAATCAGTAAAGGAATTGATAAGAGGCAGGAAGAGACGCTCAACAACATGCTACTGAAGATCATAAGTTTCTGTTCGTTTGGTTTTTTACATGAGATATGCGTTTTTGAA
ACTCCTTTGCCGGTTGTGCCTACTATTTACAAGGATGTGAAAGGAAATGCTATTAAGTCAAATCAGGAATTTATCAAGTTTTGTTTTCTTTGGTCTTATGGACATACAGG
TGATGAGGATTACTACAAATCGGGTGATGCTGAGAAGGAGGTCTGA

mRNA sequence

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Protein sequence

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MPSLEPPEDESIRTLYIGGLDARVTENNNNEFQRNIRGKGPTTAHIYFEQTTLDESIPTLQDPLQQAHNLLGEKISKGIDKRQEETLNNMLLKIISFCSFGFLHEICVFE
TPLPVVPTIYKDVKGNAIKSNQEFIKFCFLWSYGHTGDEDYYKSGDAEKEV

Spg031103 (gene) of Sponge gourd (cylindrica) v1 genome