; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg031121 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031121
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Genome locationscaffold8:30202032..30206888
RNA-Seq ExpressionSpg031121
SyntenySpg031121
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041121.1 hypothetical protein E6C27_scaffold128G00290 [Cucumis melo var. makuwa]9.3e-0430.5Show/hide
Query:  PKGNRPSLKVRELAKT--------------------------------------VEIKLPVPDKLPKSAKSFP------IKLQYVGGVVHCVIFQTELCQ
        P+GNRPSL+  EL  T                                      VEI+LPVPD+LP SA+S        ++L +    V  + ++    +
Subjt:  PKGNRPSLKVRELAKT--------------------------------------VEIKLPVPDKLPKSAKSFP------IKLQYVGGVVHCVIFQTELCQ

Query:  GCTSCMSKGFQGFRRVVLHVKYFISKISVFSRFNDSTGSTG
          +    +GF+GF  VV HV+Y ISKI +F  FN   G  G
Subjt:  GCTSCMSKGFQGFRRVVLHVKYFISKISVFSRFNDSTGSTG

KAA0054353.1 uncharacterized protein E6C27_scaffold24G00800 [Cucumis melo var. makuwa]1.6e-0840.32Show/hide
Query:  PKGNRPSLKVRELAKT-----------------VEIKLPVPDKLPKSAKSFP------IKLQYVGGVVHCVIFQTELCQGCTSCMSKGFQGFRRVVLHVK
        P+GN  SL+  EL KT                 VEI+LPV D L  SA+S        +KL +    V  + ++       +    +GF+GFR VV HV+
Subjt:  PKGNRPSLKVRELAKT-----------------VEIKLPVPDKLPKSAKSFP------IKLQYVGGVVHCVIFQTELCQGCTSCMSKGFQGFRRVVLHVK

Query:  YFISKISVFSRFNDSTGSTGIVRG
        Y ISKI +F RFN S GSTGIVRG
Subjt:  YFISKISVFSRFNDSTGSTGIVRG

KAA0062263.1 hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]9.3e-0436.14Show/hide
Query:  KHESGFVVFGGFLDKSIGNLIFIPSNFRIHEHRKTRLFKVLMLGFGLFDRPKGNRPSLKVRELAKTVEIKLPVPDKLPKSAKS
        ++ + F+     LD+ + NL+FI S              V +      + P+GNRPSL++ +L KTVEI+LP+PD LP S++S
Subjt:  KHESGFVVFGGFLDKSIGNLIFIPSNFRIHEHRKTRLFKVLMLGFGLFDRPKGNRPSLKVRELAKTVEIKLPVPDKLPKSAKS

TrEMBL top hitse value%identityAlignment
A0A5A7THH5 Uncharacterized protein4.5e-0430.5Show/hide
Query:  PKGNRPSLKVRELAKT--------------------------------------VEIKLPVPDKLPKSAKSFP------IKLQYVGGVVHCVIFQTELCQ
        P+GNRPSL+  EL  T                                      VEI+LPVPD+LP SA+S        ++L +    V  + ++    +
Subjt:  PKGNRPSLKVRELAKT--------------------------------------VEIKLPVPDKLPKSAKSFP------IKLQYVGGVVHCVIFQTELCQ

Query:  GCTSCMSKGFQGFRRVVLHVKYFISKISVFSRFNDSTGSTG
          +    +GF+GF  VV HV+Y ISKI +F  FN   G  G
Subjt:  GCTSCMSKGFQGFRRVVLHVKYFISKISVFSRFNDSTGSTG

A0A5A7UEC1 Uncharacterized protein7.9e-0940.32Show/hide
Query:  PKGNRPSLKVRELAKT-----------------VEIKLPVPDKLPKSAKSFP------IKLQYVGGVVHCVIFQTELCQGCTSCMSKGFQGFRRVVLHVK
        P+GN  SL+  EL KT                 VEI+LPV D L  SA+S        +KL +    V  + ++       +    +GF+GFR VV HV+
Subjt:  PKGNRPSLKVRELAKT-----------------VEIKLPVPDKLPKSAKSFP------IKLQYVGGVVHCVIFQTELCQGCTSCMSKGFQGFRRVVLHVK

Query:  YFISKISVFSRFNDSTGSTGIVRG
        Y ISKI +F RFN S GSTGIVRG
Subjt:  YFISKISVFSRFNDSTGSTGIVRG

A0A5A7V2F2 Uncharacterized protein4.5e-0436.14Show/hide
Query:  KHESGFVVFGGFLDKSIGNLIFIPSNFRIHEHRKTRLFKVLMLGFGLFDRPKGNRPSLKVRELAKTVEIKLPVPDKLPKSAKS
        ++ + F+     LD+ + NL+FI S              V +      + P+GNRPSL++ +L KTVEI+LP+PD LP S++S
Subjt:  KHESGFVVFGGFLDKSIGNLIFIPSNFRIHEHRKTRLFKVLMLGFGLFDRPKGNRPSLKVRELAKTVEIKLPVPDKLPKSAKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGAGGAAGCAAAAGGACGAGAGCGGGATGTTCGAGTATCGAAATCAGGGTCAAATTGCACAAAAAGACATTGCTCTAGCCAGACTACCTGAGAGGGTAGCAGAGAA
GCACGAATCTGGATTTGTTGTGTTCGGGGGATTTCTGGACAAATCCATTGGGAATCTCATTTTCATTCCTTCAAATTTTAGGATTCATGAGCATAGAAAGACAAGACTAT
TTAAGGTTCTGATGCTCGGTTTTGGTTTGTTTGACAGGCCAAAAGGAAATAGGCCGAGTCTAAAGGTTAGGGAACTAGCCAAGACTGTAGAGATCAAGCTCCCGGTGCCT
GATAAACTGCCAAAGTCTGCTAAAAGCTTCCCGATCAAGCTGCAGTATGTGGGTGGAGTTGTACATTGTGTTATTTTCCAAACTGAGTTATGTCAGGGCTGCACTTCATG
TATGTCTAAAGGTTTTCAAGGATTCCGTCGTGTTGTGTTGCATGTAAAGTATTTCATATCTAAGATTAGCGTGTTTAGCAGGTTCAACGATTCAACAGGGTCAACAGGTA
TCGTTAGAGGAGGACGATGTCTCTCGGATCAAAATCCCCAAATTTCGCACTGGTCTCTTTCGTCGTTGGATTATGGGAAACTGAATGTTGACGTTGTTTGGAGTTCTCAG
TCTTCTTTTAGTTTTGGCATTATTTGTAGAGATTCGATGGGTGCGGCTAAGGGTGCATTTGGCATTTCCTCTGATGGTGTTTCTTCTCCTTTAATGGTTGAATTACGGGC
TATTTTGGAAGGTTTGAAGTTTGTTATGTTTCTGGGTTGCTTTGATTTGGTGGTGTGGAATCTGATTGCCTTCAAGCCATCAACTTATTTTGAAGAAAACAGAATCATGG
TGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACGAGGAAGCAAAAGGACGAGAGCGGGATGTTCGAGTATCGAAATCAGGGTCAAATTGCACAAAAAGACATTGCTCTAGCCAGACTACCTGAGAGGGTAGCAGAGAA
GCACGAATCTGGATTTGTTGTGTTCGGGGGATTTCTGGACAAATCCATTGGGAATCTCATTTTCATTCCTTCAAATTTTAGGATTCATGAGCATAGAAAGACAAGACTAT
TTAAGGTTCTGATGCTCGGTTTTGGTTTGTTTGACAGGCCAAAAGGAAATAGGCCGAGTCTAAAGGTTAGGGAACTAGCCAAGACTGTAGAGATCAAGCTCCCGGTGCCT
GATAAACTGCCAAAGTCTGCTAAAAGCTTCCCGATCAAGCTGCAGTATGTGGGTGGAGTTGTACATTGTGTTATTTTCCAAACTGAGTTATGTCAGGGCTGCACTTCATG
TATGTCTAAAGGTTTTCAAGGATTCCGTCGTGTTGTGTTGCATGTAAAGTATTTCATATCTAAGATTAGCGTGTTTAGCAGGTTCAACGATTCAACAGGGTCAACAGGTA
TCGTTAGAGGAGGACGATGTCTCTCGGATCAAAATCCCCAAATTTCGCACTGGTCTCTTTCGTCGTTGGATTATGGGAAACTGAATGTTGACGTTGTTTGGAGTTCTCAG
TCTTCTTTTAGTTTTGGCATTATTTGTAGAGATTCGATGGGTGCGGCTAAGGGTGCATTTGGCATTTCCTCTGATGGTGTTTCTTCTCCTTTAATGGTTGAATTACGGGC
TATTTTGGAAGGTTTGAAGTTTGTTATGTTTCTGGGTTGCTTTGATTTGGTGGTGTGGAATCTGATTGCCTTCAAGCCATCAACTTATTTTGAAGAAAACAGAATCATGG
TGTGA
Protein sequenceShow/hide protein sequence
MTRKQKDESGMFEYRNQGQIAQKDIALARLPERVAEKHESGFVVFGGFLDKSIGNLIFIPSNFRIHEHRKTRLFKVLMLGFGLFDRPKGNRPSLKVRELAKTVEIKLPVP
DKLPKSAKSFPIKLQYVGGVVHCVIFQTELCQGCTSCMSKGFQGFRRVVLHVKYFISKISVFSRFNDSTGSTGIVRGGRCLSDQNPQISHWSLSSLDYGKLNVDVVWSSQ
SSFSFGIICRDSMGAAKGAFGISSDGVSSPLMVELRAILEGLKFVMFLGCFDLVVWNLIAFKPSTYFEENRIMV