; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg031146 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031146
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold8:28771393..28773432
RNA-Seq ExpressionSpg031146
SyntenySpg031146
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043405.1 hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa]2.2e-3948.29Show/hide
Query:  AKSGEASTSFVKPKVVKDEKCSNSPILRYVPLSRRKMGESPFTECSESIK-------------KKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVAD
        ++ GEASTS  K  ++ DEK SN  ILRYVPLSRR+ GESPF +  + +K             KKLL+EG+ +P +RKG GYKSPEP+ IIR+ K KV D
Subjt:  AKSGEASTSFVKPKVVKDEKCSNSPILRYVPLSRRKMGESPFTECSESIK-------------KKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVAD

Query:  TNHITVEEVDDSKEKESVDQRTSVFRCIRPPVARALVFQRLSVNETEEESTQPTNSSIRPSVFRRLSMPIGEEESTFATPNVTRPSAFQRLNIPIGEEES
        +NHITV EVD  +EKE   QR S F  IRP V R  VF+RLSV +TE +  Q T+S  + S  +RL+M   +E+ T      TRPSAF+RL++   ++  
Subjt:  TNHITVEEVDDSKEKESVDQRTSVFRCIRPPVARALVFQRLSVNETEEESTQPTNSSIRPSVFRRLSMPIGEEESTFATPNVTRPSAFQRLNIPIGEEES

Query:  TFSTP
        T   P
Subjt:  TFSTP

KAA0047672.1 uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa]3.0e-3640.23Show/hide
Query:  VEDDDVPASSSGTMASLGDLSSFSIKDLLSLPQEAKS-------GEASTSFVKPKVVKDEKCSNSPILRYVPLSRRKMGESPFTECSESIKK---KLLKE
        +++D  P + S  +  +    +F +K L S      +        EASTS  K  ++ +E  SN PILRYVPLSR K GESPF E  + +K    ++LKE
Subjt:  VEDDDVPASSSGTMASLGDLSSFSIKDLLSLPQEAKS-------GEASTSFVKPKVVKDEKCSNSPILRYVPLSRRKMGESPFTECSESIKK---KLLKE

Query:  GYSL---PTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRCIRPPVARALVFQRLSVNETEEESTQPTNSSIRPSVFRRL
         +++     T+KGLGYKSPEP+RI R+GK KV D+NHITV+EVD  + KE   QRTS F  I P VARA VF+RLS+ E + +  Q T++  R S F+RL
Subjt:  GYSL---PTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRCIRPPVARALVFQRLSVNETEEESTQPTNSSIRPSVFRRL

Query:  SMPIGEEESTFATPNVTRPSAFQRLNIPIGEEESTFSTPDVIR-----PSVFQRLSVTTRRDKKNS
        ++   EE+        T+PSAF+RL+I   +   T   P +       P V    S+ T++ +  S
Subjt:  SMPIGEEESTFATPNVTRPSAFQRLNIPIGEEESTFSTPDVIR-----PSVFQRLSVTTRRDKKNS

KAA0055957.1 uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa]3.8e-3944.26Show/hide
Query:  EASTSFVKPKVVKDEKCSNSPILRYVPLSRRKMGESPFTECSESIK-------------------------------------------KKLLKEGYSLP
        EAST+  K  ++ DEK SN PILRYVPLSRRK GESPF E  + +K                                           KKLL+EG+ +P
Subjt:  EASTSFVKPKVVKDEKCSNSPILRYVPLSRRKMGESPFTECSESIK-------------------------------------------KKLLKEGYSLP

Query:  TTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRCIRPPVARALVFQRLSVNETEEESTQPTNSSIRPSVFRRLSMPIGEEE
         +RKGLGYKSPEP+RI R+GK KV D NHITV+EVD  +EKE  +QRTS F  I P VARA VF+RLS+ E + +  Q T++  R S F+RL++   EE+
Subjt:  TTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRCIRPPVARALVFQRLSVNETEEESTQPTNSSIRPSVFRRLSMPIGEEE

Query:  STFATPNVTRPSAFQRLNIPIGEEESTFSTPDVIR
            T   T+PSAF+RL+I   +   T   P + R
Subjt:  STFATPNVTRPSAFQRLNIPIGEEESTFSTPDVIR

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.2e-3831.81Show/hide
Query:  SQGKYDSIEDENEGWTLVVRRKKQKQSYERKESCLFRDSKRKVKSQRKKGKKKSRIRSKHVVEESEDFFCPPQLITLAEYFPRRFLDDSQGEALETVT--
        SQ K   IE+++EGWT+V RRKK+K +  +KES L+ + +R  K+Q+ K KKK+R + K V E+ +DF    +++TLA++FP RFL D Q E    V   
Subjt:  SQGKYDSIEDENEGWTLVVRRKKQKQSYERKESCLFRDSKRKVKSQRKKGKKKSRIRSKHVVEESEDFFCPPQLITLAEYFPRRFLDDSQGEALETVT--

Query:  ---------------CHIVDVVEDD--------DVPASSSG------------------------TMASLGDL---------------------------
                       C  +D  ++D        + P   SG                        TM  LG L                           
Subjt:  ---------------CHIVDVVEDD--------DVPASSSG------------------------TMASLGDL---------------------------

Query:  --------------------SSFSIKDLLSLPQEAKSG-------EASTSFVKPKVVKDEKCSNSPILRYVPLSRRKMGESPFTECSESIK---------
                             +  +K L S      +G       EASTS  K  +V DEK SN PILRYVPLSRRK GESPF E  + +K         
Subjt:  --------------------SSFSIKDLLSLPQEAKSG-------EASTSFVKPKVVKDEKCSNSPILRYVPLSRRKMGESPFTECSESIK---------

Query:  --------------------------------------------------------------------KKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGK
                                                                            KKLL+EG+++P +RKGLGYK PEP+RI R+GK
Subjt:  --------------------------------------------------------------------KKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGK

Query:  AKVADTNHITVEEVDDSKEKESVDQRTSVFRCIRPPVARALVFQRLSVNETEEESTQPTNSSIRPSVFRRLSMPIGEEEST
         KV D+NHITV+EVD  +EKE   QRTS F  + P VARA VF+RLS+ E E +  Q T+S  R S F+RL+M    E+ +
Subjt:  AKVADTNHITVEEVDDSKEKESVDQRTSVFRCIRPPVARALVFQRLSVNETEEESTQPTNSSIRPSVFRRLSMPIGEEEST

TYK28162.1 uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]4.2e-3842.45Show/hide
Query:  EASTSFVKPKVVKDEKCSNSPILRYVPLSRRKMGESPFTECSESIK-----------------------------------------------------K
        EAST+  K  ++ DEK SN PILRYVPLSRRK GESPF E  + +K                                                     K
Subjt:  EASTSFVKPKVVKDEKCSNSPILRYVPLSRRKMGESPFTECSESIK-----------------------------------------------------K

Query:  KLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRCIRPPVARALVFQRLSVNETEEESTQPTNSSIRPSVFR
        KLL+EG+ +P +RKGLGYKSPEP+RI R+GK KV D+NHITV+EVD  +EKE  +QRTS F  I P VARA VF+RLS+ E E +  Q T++  + S F+
Subjt:  KLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRCIRPPVARALVFQRLSVNETEEESTQPTNSSIRPSVFR

Query:  RLSMPIGEEESTFATPNVTRPSAFQRLNIPIGEEESTFSTPDVIR
        RL++   EE+    T   T+PSAF+RL+I   +   T   P + R
Subjt:  RLSMPIGEEESTFATPNVTRPSAFQRLNIPIGEEESTFSTPDVIR

TrEMBL top hitse value%identityAlignment
A0A5A7TPR5 RNase H domain-containing protein1.1e-3948.29Show/hide
Query:  AKSGEASTSFVKPKVVKDEKCSNSPILRYVPLSRRKMGESPFTECSESIK-------------KKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVAD
        ++ GEASTS  K  ++ DEK SN  ILRYVPLSRR+ GESPF +  + +K             KKLL+EG+ +P +RKG GYKSPEP+ IIR+ K KV D
Subjt:  AKSGEASTSFVKPKVVKDEKCSNSPILRYVPLSRRKMGESPFTECSESIK-------------KKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVAD

Query:  TNHITVEEVDDSKEKESVDQRTSVFRCIRPPVARALVFQRLSVNETEEESTQPTNSSIRPSVFRRLSMPIGEEESTFATPNVTRPSAFQRLNIPIGEEES
        +NHITV EVD  +EKE   QR S F  IRP V R  VF+RLSV +TE +  Q T+S  + S  +RL+M   +E+ T      TRPSAF+RL++   ++  
Subjt:  TNHITVEEVDDSKEKESVDQRTSVFRCIRPPVARALVFQRLSVNETEEESTQPTNSSIRPSVFRRLSMPIGEEESTFATPNVTRPSAFQRLNIPIGEEES

Query:  TFSTP
        T   P
Subjt:  TFSTP

A0A5A7UMY2 Reverse transcriptase domain-containing protein1.8e-3944.26Show/hide
Query:  EASTSFVKPKVVKDEKCSNSPILRYVPLSRRKMGESPFTECSESIK-------------------------------------------KKLLKEGYSLP
        EAST+  K  ++ DEK SN PILRYVPLSRRK GESPF E  + +K                                           KKLL+EG+ +P
Subjt:  EASTSFVKPKVVKDEKCSNSPILRYVPLSRRKMGESPFTECSESIK-------------------------------------------KKLLKEGYSLP

Query:  TTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRCIRPPVARALVFQRLSVNETEEESTQPTNSSIRPSVFRRLSMPIGEEE
         +RKGLGYKSPEP+RI R+GK KV D NHITV+EVD  +EKE  +QRTS F  I P VARA VF+RLS+ E + +  Q T++  R S F+RL++   EE+
Subjt:  TTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRCIRPPVARALVFQRLSVNETEEESTQPTNSSIRPSVFRRLSMPIGEEE

Query:  STFATPNVTRPSAFQRLNIPIGEEESTFSTPDVIR
            T   T+PSAF+RL+I   +   T   P + R
Subjt:  STFATPNVTRPSAFQRLNIPIGEEESTFSTPDVIR

A0A5D3BY54 Ty3-gypsy retrotransposon protein1.6e-3831.81Show/hide
Query:  SQGKYDSIEDENEGWTLVVRRKKQKQSYERKESCLFRDSKRKVKSQRKKGKKKSRIRSKHVVEESEDFFCPPQLITLAEYFPRRFLDDSQGEALETVT--
        SQ K   IE+++EGWT+V RRKK+K +  +KES L+ + +R  K+Q+ K KKK+R + K V E+ +DF    +++TLA++FP RFL D Q E    V   
Subjt:  SQGKYDSIEDENEGWTLVVRRKKQKQSYERKESCLFRDSKRKVKSQRKKGKKKSRIRSKHVVEESEDFFCPPQLITLAEYFPRRFLDDSQGEALETVT--

Query:  ---------------CHIVDVVEDD--------DVPASSSG------------------------TMASLGDL---------------------------
                       C  +D  ++D        + P   SG                        TM  LG L                           
Subjt:  ---------------CHIVDVVEDD--------DVPASSSG------------------------TMASLGDL---------------------------

Query:  --------------------SSFSIKDLLSLPQEAKSG-------EASTSFVKPKVVKDEKCSNSPILRYVPLSRRKMGESPFTECSESIK---------
                             +  +K L S      +G       EASTS  K  +V DEK SN PILRYVPLSRRK GESPF E  + +K         
Subjt:  --------------------SSFSIKDLLSLPQEAKSG-------EASTSFVKPKVVKDEKCSNSPILRYVPLSRRKMGESPFTECSESIK---------

Query:  --------------------------------------------------------------------KKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGK
                                                                            KKLL+EG+++P +RKGLGYK PEP+RI R+GK
Subjt:  --------------------------------------------------------------------KKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGK

Query:  AKVADTNHITVEEVDDSKEKESVDQRTSVFRCIRPPVARALVFQRLSVNETEEESTQPTNSSIRPSVFRRLSMPIGEEEST
         KV D+NHITV+EVD  +EKE   QRTS F  + P VARA VF+RLS+ E E +  Q T+S  R S F+RL+M    E+ +
Subjt:  AKVADTNHITVEEVDDSKEKESVDQRTSVFRCIRPPVARALVFQRLSVNETEEESTQPTNSSIRPSVFRRLSMPIGEEEST

A0A5D3C8N8 Ribonuclease H1.5e-3640.23Show/hide
Query:  VEDDDVPASSSGTMASLGDLSSFSIKDLLSLPQEAKS-------GEASTSFVKPKVVKDEKCSNSPILRYVPLSRRKMGESPFTECSESIKK---KLLKE
        +++D  P + S  +  +    +F +K L S      +        EASTS  K  ++ +E  SN PILRYVPLSR K GESPF E  + +K    ++LKE
Subjt:  VEDDDVPASSSGTMASLGDLSSFSIKDLLSLPQEAKS-------GEASTSFVKPKVVKDEKCSNSPILRYVPLSRRKMGESPFTECSESIKK---KLLKE

Query:  GYSL---PTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRCIRPPVARALVFQRLSVNETEEESTQPTNSSIRPSVFRRL
         +++     T+KGLGYKSPEP+RI R+GK KV D+NHITV+EVD  + KE   QRTS F  I P VARA VF+RLS+ E + +  Q T++  R S F+RL
Subjt:  GYSL---PTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRCIRPPVARALVFQRLSVNETEEESTQPTNSSIRPSVFRRL

Query:  SMPIGEEESTFATPNVTRPSAFQRLNIPIGEEESTFSTPDVIR-----PSVFQRLSVTTRRDKKNS
        ++   EE+        T+PSAF+RL+I   +   T   P +       P V    S+ T++ +  S
Subjt:  SMPIGEEESTFATPNVTRPSAFQRLNIPIGEEESTFSTPDVIR-----PSVFQRLSVTTRRDKKNS

A0A5D3DXC7 Reverse transcriptase domain-containing protein2.0e-3842.45Show/hide
Query:  EASTSFVKPKVVKDEKCSNSPILRYVPLSRRKMGESPFTECSESIK-----------------------------------------------------K
        EAST+  K  ++ DEK SN PILRYVPLSRRK GESPF E  + +K                                                     K
Subjt:  EASTSFVKPKVVKDEKCSNSPILRYVPLSRRKMGESPFTECSESIK-----------------------------------------------------K

Query:  KLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRCIRPPVARALVFQRLSVNETEEESTQPTNSSIRPSVFR
        KLL+EG+ +P +RKGLGYKSPEP+RI R+GK KV D+NHITV+EVD  +EKE  +QRTS F  I P VARA VF+RLS+ E E +  Q T++  + S F+
Subjt:  KLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRCIRPPVARALVFQRLSVNETEEESTQPTNSSIRPSVFR

Query:  RLSMPIGEEESTFATPNVTRPSAFQRLNIPIGEEESTFSTPDVIR
        RL++   EE+    T   T+PSAF+RL+I   +   T   P + R
Subjt:  RLSMPIGEEESTFATPNVTRPSAFQRLNIPIGEEESTFSTPDVIR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGATCCCAAGGAAAATATGATTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTGCGTCGCAAAAAGCAAAAGCAAAGTTACGAACGAAAAGAGTCCTG
CCTATTTCGAGATAGTAAAAGAAAGGTTAAGTCTCAAAGGAAGAAAGGAAAAAAGAAGTCAAGGATCAGGTCAAAGCATGTCGTGGAGGAAAGTGAAGATTTCTTTTGCC
CTCCACAACTCATAACTTTGGCAGAATACTTCCCAAGGCGTTTTCTTGATGATAGTCAAGGAGAGGCACTTGAGACTGTCACGTGTCACATTGTGGATGTGGTGGAAGAT
GATGATGTCCCTGCTAGCTCCTCAGGAACGATGGCGAGTCTAGGAGACTTATCCTCCTTCAGCATAAAGGATTTATTGTCACTTCCTCAGGAAGCTAAAAGCGGTGAAGC
GTCTACAAGCTTTGTGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGATACGTCCCCTTATCTCGACGTAAAATGGGTGAATCACCTTTCA
CTGAATGTTCAGAAAGCATAAAGAAGAAACTTCTAAAGGAAGGTTATAGTCTGCCTACAACGAGAAAAGGACTGGGATATAAGTCGCCTGAACCAGTTCGCATAATAAGA
AGAGGGAAGGCGAAAGTGGCAGATACAAATCATATAACAGTAGAAGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGTGCATCAG
GCCACCAGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAAAGCACACAACCTACCAATAGCTCCATTCGACCTTCAGTTTTTCGAAGGT
TAAGTATGCCCATTGGGGAAGAAGAGAGTACATTTGCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATATTCCCATTGGGGAAGAGGAGAGTACATTT
TCAACTCCGGATGTGATTCGGCCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAGAGACAAAAAGAACAGTCTGCTTCATCGATATCTCACCGACTTCAATATGAA
GATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGATCCCAAGGAAAATATGATTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTGCGTCGCAAAAAGCAAAAGCAAAGTTACGAACGAAAAGAGTCCTG
CCTATTTCGAGATAGTAAAAGAAAGGTTAAGTCTCAAAGGAAGAAAGGAAAAAAGAAGTCAAGGATCAGGTCAAAGCATGTCGTGGAGGAAAGTGAAGATTTCTTTTGCC
CTCCACAACTCATAACTTTGGCAGAATACTTCCCAAGGCGTTTTCTTGATGATAGTCAAGGAGAGGCACTTGAGACTGTCACGTGTCACATTGTGGATGTGGTGGAAGAT
GATGATGTCCCTGCTAGCTCCTCAGGAACGATGGCGAGTCTAGGAGACTTATCCTCCTTCAGCATAAAGGATTTATTGTCACTTCCTCAGGAAGCTAAAAGCGGTGAAGC
GTCTACAAGCTTTGTGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGATACGTCCCCTTATCTCGACGTAAAATGGGTGAATCACCTTTCA
CTGAATGTTCAGAAAGCATAAAGAAGAAACTTCTAAAGGAAGGTTATAGTCTGCCTACAACGAGAAAAGGACTGGGATATAAGTCGCCTGAACCAGTTCGCATAATAAGA
AGAGGGAAGGCGAAAGTGGCAGATACAAATCATATAACAGTAGAAGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGTGCATCAG
GCCACCAGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAAAGCACACAACCTACCAATAGCTCCATTCGACCTTCAGTTTTTCGAAGGT
TAAGTATGCCCATTGGGGAAGAAGAGAGTACATTTGCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATATTCCCATTGGGGAAGAGGAGAGTACATTT
TCAACTCCGGATGTGATTCGGCCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAGAGACAAAAAGAACAGTCTGCTTCATCGATATCTCACCGACTTCAATATGAA
GATGTGA
Protein sequenceShow/hide protein sequence
MKGSQGKYDSIEDENEGWTLVVRRKKQKQSYERKESCLFRDSKRKVKSQRKKGKKKSRIRSKHVVEESEDFFCPPQLITLAEYFPRRFLDDSQGEALETVTCHIVDVVED
DDVPASSSGTMASLGDLSSFSIKDLLSLPQEAKSGEASTSFVKPKVVKDEKCSNSPILRYVPLSRRKMGESPFTECSESIKKKLLKEGYSLPTTRKGLGYKSPEPVRIIR
RGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRCIRPPVARALVFQRLSVNETEEESTQPTNSSIRPSVFRRLSMPIGEEESTFATPNVTRPSAFQRLNIPIGEEESTF
STPDVIRPSVFQRLSVTTRRDKKNSLLHRYLTDFNMKM