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Spg031165 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031165
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold8:28111081..28118748
RNA-Seq ExpressionSpg031165
SyntenySpg031165
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051940.1 hypothetical protein E6C27_scaffold60G003970 [Cucumis melo var. makuwa]2.2e-1163.89Show/hide
Query:  EVMSVGSYGTESGKSGKNKCYIPLLTLSVLCDNDAVVEIELPVPDTLPTSAESSKSSSSYFPNRVTSGLHLM
        E++S+  YGT        +   PL TLSVL DNDAVVEIEL VPDTLPTSAESS S+SSYF N+V SGLHL+
Subjt:  EVMSVGSYGTESGKSGKNKCYIPLLTLSVLCDNDAVVEIELPVPDTLPTSAESSKSSSSYFPNRVTSGLHLM

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]9.8e-1251.4Show/hide
Query:  ESGKSGK------------------NKCYIPLLTLSVLCDNDAVVEIELPVPDTLPTSAESSKSSSS----------------YFPNRVTSGLHLMFSDP
        ESGKSGK                       PL TLSVL DNDAVVEIELPVPDTLPTSAESS+S+SS                YF N+V S LHL+FS  
Subjt:  ESGKSGK------------------NKCYIPLLTLSVLCDNDAVVEIELPVPDTLPTSAESSKSSSS----------------YFPNRVTSGLHLMFSDP

Query:  VGSTGLL
        VGSTG++
Subjt:  VGSTGLL

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.0e-1462.07Show/hide
Query:  ESGKSGK---NK-----------CYIPLLTLSVLCDNDAVVEIELPVPDTLPTSAESSKSSSSYFPNRVTSGLHLMFSDPVGSTGLL
        ESGKSGK   NK              PL T SVL DNDAVVEIEL VPDTLPTSAES  S+SSYF N+V SGLHL+F+  VGSTG++
Subjt:  ESGKSGK---NK-----------CYIPLLTLSVLCDNDAVVEIELPVPDTLPTSAESSKSSSSYFPNRVTSGLHLMFSDPVGSTGLL

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]1.8e-1359.04Show/hide
Query:  EVMSVGSYGTESGKSGKNKCYIPLLTLSVLCDNDAVVEIELPVPDTLPTSAESSKSSSSYFPNRVTSGLHLMFSDPVGSTGLL
        E++S+  +GT        +    L TLSVL DNDAVVEIELPVPDTLPTS ESS+S+SSYF N+V SGLHL+F+  V STG++
Subjt:  EVMSVGSYGTESGKSGKNKCYIPLLTLSVLCDNDAVVEIELPVPDTLPTSAESSKSSSSYFPNRVTSGLHLMFSDPVGSTGLL

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]9.8e-1251.4Show/hide
Query:  ESGKSGK------------------NKCYIPLLTLSVLCDNDAVVEIELPVPDTLPTSAESSKSSSS----------------YFPNRVTSGLHLMFSDP
        ESGKSGK                       PL TLSVL DNDAVVEIELPVPDTLPTSAESS+S+SS                YF N+V S LHL+FS  
Subjt:  ESGKSGK------------------NKCYIPLLTLSVLCDNDAVVEIELPVPDTLPTSAESSKSSSS----------------YFPNRVTSGLHLMFSDP

Query:  VGSTGLL
        VGSTG++
Subjt:  VGSTGLL

TrEMBL top hitse value%identityAlignment
A0A5A7U9T8 Uncharacterized protein1.1e-1163.89Show/hide
Query:  EVMSVGSYGTESGKSGKNKCYIPLLTLSVLCDNDAVVEIELPVPDTLPTSAESSKSSSSYFPNRVTSGLHLM
        E++S+  YGT        +   PL TLSVL DNDAVVEIEL VPDTLPTSAESS S+SSYF N+V SGLHL+
Subjt:  EVMSVGSYGTESGKSGKNKCYIPLLTLSVLCDNDAVVEIELPVPDTLPTSAESSKSSSSYFPNRVTSGLHLM

A0A5A7V9N3 Reverse transcriptase4.7e-1251.4Show/hide
Query:  ESGKSGK------------------NKCYIPLLTLSVLCDNDAVVEIELPVPDTLPTSAESSKSSSS----------------YFPNRVTSGLHLMFSDP
        ESGKSGK                       PL TLSVL DNDAVVEIELPVPDTLPTSAESS+S+SS                YF N+V S LHL+FS  
Subjt:  ESGKSGK------------------NKCYIPLLTLSVLCDNDAVVEIELPVPDTLPTSAESSKSSSS----------------YFPNRVTSGLHLMFSDP

Query:  VGSTGLL
        VGSTG++
Subjt:  VGSTGLL

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein3.9e-1462.07Show/hide
Query:  ESGKSGK---NK-----------CYIPLLTLSVLCDNDAVVEIELPVPDTLPTSAESSKSSSSYFPNRVTSGLHLMFSDPVGSTGLL
        ESGKSGK   NK              PL T SVL DNDAVVEIEL VPDTLPTSAES  S+SSYF N+V SGLHL+F+  VGSTG++
Subjt:  ESGKSGK---NK-----------CYIPLLTLSVLCDNDAVVEIELPVPDTLPTSAESSKSSSSYFPNRVTSGLHLMFSDPVGSTGLL

A0A5D3BMJ4 Retrotrans_gag domain-containing protein8.6e-1459.04Show/hide
Query:  EVMSVGSYGTESGKSGKNKCYIPLLTLSVLCDNDAVVEIELPVPDTLPTSAESSKSSSSYFPNRVTSGLHLMFSDPVGSTGLL
        E++S+  +GT        +    L TLSVL DNDAVVEIELPVPDTLPTS ESS+S+SSYF N+V SGLHL+F+  V STG++
Subjt:  EVMSVGSYGTESGKSGKNKCYIPLLTLSVLCDNDAVVEIELPVPDTLPTSAESSKSSSSYFPNRVTSGLHLMFSDPVGSTGLL

A0A5D3DSY7 Putative Retrotransposon protein4.7e-1251.4Show/hide
Query:  ESGKSGK------------------NKCYIPLLTLSVLCDNDAVVEIELPVPDTLPTSAESSKSSSS----------------YFPNRVTSGLHLMFSDP
        ESGKSGK                       PL TLSVL DNDAVVEIELPVPDTLPTSAESS+S+SS                YF N+V S LHL+FS  
Subjt:  ESGKSGK------------------NKCYIPLLTLSVLCDNDAVVEIELPVPDTLPTSAESSKSSSS----------------YFPNRVTSGLHLMFSDP

Query:  VGSTGLL
        VGSTG++
Subjt:  VGSTGLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCAAGCAAAGGCAGCCATGGTAGAATCTGGGTTAAACCTGCCTATCTCTGGTTTTTTATTCGGTTTGAGCTACACAAAAAGAACTAAGAGACCACAGAATTTTCA
TGCAAACCAGGAGGATCTCTGGTTTTCGCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGCATCAGAAGCTCAATTTGGTATTGAGGAAGTTATGAGTGTTGGAAGTT
ATGGTACTGAATCTGGAAAATCTGGAAAAAATAAATGTTATATTCCGTTGTTGACATTGAGTGTACTCTGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCAGTGCCT
GATACACTGCCAACGTCTGCTGAAAGCTCCAAATCAAGCTCCAGTTATTTTCCAAACCGAGTTACGTCAGGGCTGCACCTCATGTTCAGCGATCCAGTAGGGTCAACAGG
TCTATTAGGTCCCACTGGTAGCTCACTAGGGGAGTTGAGGGCTTTTATCCCTTCAGGGACATTGTCTCGCAAGACGAAATTCGCTCCTACCCATTTCAAGGATAGTAGAG
AGGTTGTTCCCTTAAGCGACACTATGGATACGACCAACTTTGTATTTGATACAAACACAATGATCCAACGCGTTCGTGTAGGGGACATGCTAGTGGGGGTATCCTATGCA
ATGAGTTTGCATAAGATCGGACTGCGAAATAGTAAACCGCTAGCTGTGACACCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCAAGCAAAGGCAGCCATGGTAGAATCTGGGTTAAACCTGCCTATCTCTGGTTTTTTATTCGGTTTGAGCTACACAAAAAGAACTAAGAGACCACAGAATTTTCA
TGCAAACCAGGAGGATCTCTGGTTTTCGCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGCATCAGAAGCTCAATTTGGTATTGAGGAAGTTATGAGTGTTGGAAGTT
ATGGTACTGAATCTGGAAAATCTGGAAAAAATAAATGTTATATTCCGTTGTTGACATTGAGTGTACTCTGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCAGTGCCT
GATACACTGCCAACGTCTGCTGAAAGCTCCAAATCAAGCTCCAGTTATTTTCCAAACCGAGTTACGTCAGGGCTGCACCTCATGTTCAGCGATCCAGTAGGGTCAACAGG
TCTATTAGGTCCCACTGGTAGCTCACTAGGGGAGTTGAGGGCTTTTATCCCTTCAGGGACATTGTCTCGCAAGACGAAATTCGCTCCTACCCATTTCAAGGATAGTAGAG
AGGTTGTTCCCTTAAGCGACACTATGGATACGACCAACTTTGTATTTGATACAAACACAATGATCCAACGCGTTCGTGTAGGGGACATGCTAGTGGGGGTATCCTATGCA
ATGAGTTTGCATAAGATCGGACTGCGAAATAGTAAACCGCTAGCTGTGACACCGTGA
Protein sequenceShow/hide protein sequence
MAQAKAAMVESGLNLPISGFLFGLSYTKRTKRPQNFHANQEDLWFSLVFRAFWGVQVASEAQFGIEEVMSVGSYGTESGKSGKNKCYIPLLTLSVLCDNDAVVEIELPVP
DTLPTSAESSKSSSSYFPNRVTSGLHLMFSDPVGSTGLLGPTGSSLGELRAFIPSGTLSRKTKFAPTHFKDSREVVPLSDTMDTTNFVFDTNTMIQRVRVGDMLVGVSYA
MSLHKIGLRNSKPLAVTP