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Spg031171 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031171
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionribosome production factor 1-like
Genome locationscaffold8:29724184..29726320
RNA-Seq ExpressionSpg031171
SyntenySpg031171
Gene Ontology termsGO:0000460 - maturation of 5.8S rRNA (biological process)
GO:0000470 - maturation of LSU-rRNA (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0030687 - preribosome, large subunit precursor (cellular component)
GO:0042134 - rRNA primary transcript binding (molecular function)
InterPro domainsIPR007109 - Brix domain
IPR044281 - U3 snoRNP protein/Ribosome production factor 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008443155.1 PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo]1.9e-2885.19Show/hide
Query:  EIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTISLGLHVERLL
        +IIEYANAKDFTSLMVVHTSRRKLD LLII L EG TAHFKISNVVLRKDIKNHGNPT H+PELVLTNFT  LGL V RL+
Subjt:  EIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTISLGLHVERLL
XP_008443158.1 PREDICTED: ribosome production factor 1 isoform X2 [Cucumis melo]1.9e-2885.19Show/hide
Query:  EIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTISLGLHVERLL
        +IIEYANAKDFTSLMVVHTSRRKLD LLII L EG TAHFKISNVVLRKDIKNHGNPT H+PELVLTNFT  LGL V RL+
Subjt:  EIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTISLGLHVERLL
XP_022155906.1 ribosome production factor 1-like [Momordica charantia]3.0e-2987.65Show/hide
Query:  EIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTISLGLHVERLL
        +IIEYANAKDFTSLMVVHTSRRKLD LLII L EG TAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFT  LGL V RL+
Subjt:  EIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTISLGLHVERLL
XP_022156150.1 ribosome production factor 1-like [Momordica charantia]3.0e-2987.65Show/hide
Query:  EIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTISLGLHVERLL
        +IIEYANAKDFTSLMVVHTSRRKLD LLII L EG TAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFT  LGL V RL+
Subjt:  EIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTISLGLHVERLL
XP_038906205.1 ribosome production factor 1 [Benincasa hispida]8.6e-2985.19Show/hide
Query:  EIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTISLGLHVERLL
        +IIEYANAKDFTSLMVVHTSRRKLD LLII L EG TAHFKISNVVLRKDIKNHGNPTSH+PELVLTNFT  LGL + RL+
Subjt:  EIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTISLGLHVERLL
TrEMBL top hitse value%identityAlignment
A0A1S3B7C9 ribosome production factor 1 isoform X29.3e-2985.19Show/hide
Query:  EIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTISLGLHVERLL
        +IIEYANAKDFTSLMVVHTSRRKLD LLII L EG TAHFKISNVVLRKDIKNHGNPT H+PELVLTNFT  LGL V RL+
Subjt:  EIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTISLGLHVERLL
A0A1S3B854 ribosome production factor 1 isoform X19.3e-2985.19Show/hide
Query:  EIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTISLGLHVERLL
        +IIEYANAKDFTSLMVVHTSRRKLD LLII L EG TAHFKISNVVLRKDIKNHGNPT H+PELVLTNFT  LGL V RL+
Subjt:  EIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTISLGLHVERLL
A0A5A7UHC7 Ribosome production factor 1 isoform X19.3e-2985.19Show/hide
Query:  EIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTISLGLHVERLL
        +IIEYANAKDFTSLMVVHTSRRKLD LLII L EG TAHFKISNVVLRKDIKNHGNPT H+PELVLTNFT  LGL V RL+
Subjt:  EIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTISLGLHVERLL
A0A6J1DPH5 ribosome production factor 1-like1.4e-2987.65Show/hide
Query:  EIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTISLGLHVERLL
        +IIEYANAKDFTSLMVVHTSRRKLD LLII L EG TAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFT  LGL V RL+
Subjt:  EIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTISLGLHVERLL
A0A6J1DT48 ribosome production factor 1-like1.4e-2987.65Show/hide
Query:  EIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTISLGLHVERLL
        +IIEYANAKDFTSLMVVHTSRRKLD LLII L EG TAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFT  LGL V RL+
Subjt:  EIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTISLGLHVERLL
SwissProt top hitse value%identityAlignment
P54073 Brix domain-containing protein F44G4.15.3e-1343.21Show/hide
Query:  IIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTISLGLHVERLLS
        IIE A  ++FT L+VVH  R+K + ++   L EG TA+FKI+++   +D+K  G  TSH PE++L NF   LG ++ R+L+
Subjt:  IIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTISLGLHVERLLS
Q5RJS9 Ribosome production factor 13.4e-1243.68Show/hide
Query:  LPVYEIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHG-NPTSHEPELVLTNFTISLGLHVERLLS
        L + +II    A+DFT L+V++  R+  + L++  L  G TAHFK+S+V LRK+IK  G +PT H PE++L NFT  LG  + R+ +
Subjt:  LPVYEIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHG-NPTSHEPELVLTNFTISLGLHVERLLS
Q7TND5 Ribosome production factor 13.4e-1243.68Show/hide
Query:  LPVYEIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHG-NPTSHEPELVLTNFTISLGLHVERLLS
        L + +II    A+DFT L+V++  R+  + L++  L  G TAHFK+S+V LRK+IK  G +PT H PE++L NFT  LG  + R+ +
Subjt:  LPVYEIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHG-NPTSHEPELVLTNFTISLGLHVERLLS
Q8AVP1 Ribosome production factor 12.6e-1242.53Show/hide
Query:  LPVYEIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHG-NPTSHEPELVLTNFTISLGLHVERLLS
        L + +II    ++D+T L+V++  R+  + L++  L +G TAHFKISNV LRK++K  G  PT H+PE++L NFT  LG  + R+ +
Subjt:  LPVYEIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHG-NPTSHEPELVLTNFTISLGLHVERLLS
Q9VKB4 Probable ribosome production factor 14.0e-1348.81Show/hide
Query:  VYEIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIK-NHGNPTSHEPELVLTNFTISLGLHVERLL
        V +I + A  ++FT +++V+  RRK + LL+I L  G TAHFK+SNV L  DIK +H   T H PE++L NFT  LGL V R+L
Subjt:  VYEIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIK-NHGNPTSHEPELVLTNFTISLGLHVERLL
Arabidopsis top hitse value%identityAlignment
AT1G63780.1 Ribosomal RNA processing Brix domain protein2.4e-0837.11Show/hide
Query:  HKKEIKKEPLPVYEIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDI---KNHGNPTSHEPELVLTNFTISLGLHVERLL
        + + I +    + EIIE A + DFT +++VH  R   D L+I  L  G TA+F + NVV R DI   K+ G      P L+  NFT  +G  V  +L
Subjt:  HKKEIKKEPLPVYEIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDI---KNHGNPTSHEPELVLTNFTISLGLHVERLL
AT4G01560.1 Ribosomal RNA processing Brix domain protein4.3e-2666.67Show/hide
Query:  KKEPLPVYEIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTISLGLHVER
        K+    + +I+EYA  KDFTSL+VVHT+RR+ D LLII L  G TAHFK+SN+VLRKDIKNHGNPTSH+PELVL NFT  LG  V R
Subjt:  KKEPLPVYEIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTISLGLHVER

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGAGAAGCACAAGAAGGAAATCAAGAAGGAACCTTTGCCTGTCTATGAGATTATAGAATATGCAAATGCCAAGGACTTCACGTCTTTGATGGTTGTTCATACGAG
TAGGAGAAAATTGGATGACCTTCTAATTATTAGCTTACTTGAGGGACTTACTGCCCACTTTAAGATATCAAATGTTGTCTTACGTAAGGATATTAAGAACCATGGAAATC
CAACCAGCCACGAGCCAGAGCTTGTATTGACTAACTTCACAATAAGCCTTGGTCTTCATGTTGAAAGGCTGCTTTCTGTACCTAGATTTCTTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGAGAAGCACAAGAAGGAAATCAAGAAGGAACCTTTGCCTGTCTATGAGATTATAGAATATGCAAATGCCAAGGACTTCACGTCTTTGATGGTTGTTCATACGAG
TAGGAGAAAATTGGATGACCTTCTAATTATTAGCTTACTTGAGGGACTTACTGCCCACTTTAAGATATCAAATGTTGTCTTACGTAAGGATATTAAGAACCATGGAAATC
CAACCAGCCACGAGCCAGAGCTTGTATTGACTAACTTCACAATAAGCCTTGGTCTTCATGTTGAAAGGCTGCTTTCTGTACCTAGATTTCTTTTTTGA
Protein sequenceShow/hide protein sequence
MDEKHKKEIKKEPLPVYEIIEYANAKDFTSLMVVHTSRRKLDDLLIISLLEGLTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTISLGLHVERLLSVPRFLF