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Spg031184 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031184
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold8:29643664..29652583
RNA-Seq ExpressionSpg031184
SyntenySpg031184
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.8e-2550.82Show/hide
Query:  EEEEEEFRG-LRAQDFRAKQEDLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTRPTSAESSRSSSR--------------------
        EE  E F G + ++  RA+    WPRGNR SLQTGELDKT                 VEIELP+PDT PTSAESS S+S                     
Subjt:  EEEEEEFRG-LRAQDFRAKQEDLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTRPTSAESSRSSSR--------------------

Query:  ------------------------VMPPRPSRRRRQNQDGTQDPTQSQSERGSSTPRGQDEAGSERFARSAQEIGFSSKAGGS
                                VMPPR SRRRRQNQDGTQDPTQ QSERGSSTPRGQ+EAGSERFARSAQEIG   KAG S
Subjt:  ------------------------VMPPRPSRRRRQNQDGTQDPTQSQSERGSSTPRGQDEAGSERFARSAQEIGFSSKAGGS

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.2e-0952.13Show/hide
Query:  GSERFARSAQEIGFSSKAGGSLVFSDVLGILRPRGNR-------LSLQT----GELDKTVEIELPVPDTRPTSAESSRSSSSTWLELYIESVHI
        G  RF R    I  SSK GG +VF D L IL    +         SL T     + D  VEIELPVPDT PTSAES  S+SSTWLELY ESVH+
Subjt:  GSERFARSAQEIGFSSKAGGSLVFSDVLGILRPRGNR-------LSLQT----GELDKTVEIELPVPDTRPTSAESSRSSSSTWLELYIESVHI

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.8e-2550.82Show/hide
Query:  EEEEEEFRG-LRAQDFRAKQEDLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTRPTSAESSRSSSR--------------------
        EE  E F G + ++  RA+    WPRGNR SLQTGELDKT                 VEIELP+PDT PTSAESS S+S                     
Subjt:  EEEEEEFRG-LRAQDFRAKQEDLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTRPTSAESSRSSSR--------------------

Query:  ------------------------VMPPRPSRRRRQNQDGTQDPTQSQSERGSSTPRGQDEAGSERFARSAQEIGFSSKAGGS
                                VMPPR SRRRRQNQDGTQDPTQ QSERGSSTPRGQ+EAGSERFARSAQEIG   KAG S
Subjt:  ------------------------VMPPRPSRRRRQNQDGTQDPTQSQSERGSSTPRGQDEAGSERFARSAQEIGFSSKAGGS

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.0e-1946.29Show/hide
Query:  PRGNRSSLQTGELDKT-----------------VEIELPVPDTRPTSAESSRSSSR--------------------------------------------
        PRGNR+SLQTGELDKT                 VEIELPVPDT PTSAESS S+S                                             
Subjt:  PRGNRSSLQTGELDKT-----------------VEIELPVPDTRPTSAESSRSSSR--------------------------------------------

Query:  -------------------VMPPRPSRRRRQNQDGTQDPTQSQSERGSSTPRGQDEAGSERFARSAQEIGFSSKA
                           VMPPR SRRRRQNQD  QDPTQ QSERGSSTPRGQ+EAGSERF RSAQEIG S +A
Subjt:  -------------------VMPPRPSRRRRQNQDGTQDPTQSQSERGSSTPRGQDEAGSERFARSAQEIGFSSKA

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]2.7e-2049.03Show/hide
Query:  PRGNRSSLQTGELDKTVEIELPVPDTRPTSAESSRSSSR------------------------------------------------------------V
        PRGNR +L TG+LDKTVEIELPVPDT PTSAESS+S+S                                                             V
Subjt:  PRGNRSSLQTGELDKTVEIELPVPDTRPTSAESSRSSSR------------------------------------------------------------V

Query:  MPPRPSRRRRQNQDGTQDPTQSQSERGSSTPRGQDEAGSERFARSAQEIGFSSKA
        MPPR SRRRRQNQDG Q PTQ QSERGSSTPRGQ+E GSERFARSAQEI    +A
Subjt:  MPPRPSRRRRQNQDGTQDPTQSQSERGSSTPRGQDEAGSERFARSAQEIGFSSKA

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.2e-0952.13Show/hide
Query:  GSERFARSAQEIGFSSKAGGSLVFSDVLGILRPRGNR-------LSLQT----GELDKTVEIELPVPDTRPTSAESSRSSSSTWLELYIESVHI
        G  RF R    I  SSK GG +VF D L IL    +         SL T     + D  VEIELPVPDT PTSAES  S+SSTWLELY ESVH+
Subjt:  GSERFARSAQEIGFSSKAGGSLVFSDVLGILRPRGNR-------LSLQT----GELDKTVEIELPVPDTRPTSAESSRSSSSTWLELYIESVHI

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.9e-2154.67Show/hide
Query:  PRGNRSSLQTGELDKT-----------------VEIELPVPDTRPTSAESSRSSSR-----------------------------------VMPPRPSRR
        PRGNR SLQTGELDKT                 VEIELPV DT P SAESS S+SR                                   VMPPR SRR
Subjt:  PRGNRSSLQTGELDKT-----------------VEIELPVPDTRPTSAESSRSSSR-----------------------------------VMPPRPSRR

Query:  RRQNQDGTQDPTQSQSERGSSTPRGQDEAGSERFARSAQEIGFSSKAGGS
        RRQN+D TQDPTQ QSERGSSTPRGQ+EA SERFARSAQEIG   KAG S
Subjt:  RRQNQDGTQDPTQSQSERGSSTPRGQDEAGSERFARSAQEIGFSSKAGGS

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase2.3e-2550.82Show/hide
Query:  EEEEEEFRG-LRAQDFRAKQEDLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTRPTSAESSRSSSR--------------------
        EE  E F G + ++  RA+    WPRGNR SLQTGELDKT                 VEIELP+PDT PTSAESS S+S                     
Subjt:  EEEEEEFRG-LRAQDFRAKQEDLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTRPTSAESSRSSSR--------------------

Query:  ------------------------VMPPRPSRRRRQNQDGTQDPTQSQSERGSSTPRGQDEAGSERFARSAQEIGFSSKAGGS
                                VMPPR SRRRRQNQDGTQDPTQ QSERGSSTPRGQ+EAGSERFARSAQEIG   KAG S
Subjt:  ------------------------VMPPRPSRRRRQNQDGTQDPTQSQSERGSSTPRGQDEAGSERFARSAQEIGFSSKAGGS

A0A5A7TKT0 Reverse transcriptase1.0e-0952.13Show/hide
Query:  GSERFARSAQEIGFSSKAGGSLVFSDVLGILRPRGNR-------LSLQT----GELDKTVEIELPVPDTRPTSAESSRSSSSTWLELYIESVHI
        G  RF R    I  SSK GG +VF D L IL    +         SL T     + D  VEIELPVPDT PTSAES  S+SSTWLELY ESVH+
Subjt:  GSERFARSAQEIGFSSKAGGSLVFSDVLGILRPRGNR-------LSLQT----GELDKTVEIELPVPDTRPTSAESSRSSSSTWLELYIESVHI

A0A5A7TKT0 Reverse transcriptase2.3e-2550.82Show/hide
Query:  EEEEEEFRG-LRAQDFRAKQEDLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTRPTSAESSRSSSR--------------------
        EE  E F G + ++  RA+    WPRGNR SLQTGELDKT                 VEIELP+PDT PTSAESS S+S                     
Subjt:  EEEEEEFRG-LRAQDFRAKQEDLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTRPTSAESSRSSSR--------------------

Query:  ------------------------VMPPRPSRRRRQNQDGTQDPTQSQSERGSSTPRGQDEAGSERFARSAQEIGFSSKAGGS
                                VMPPR SRRRRQNQDGTQDPTQ QSERGSSTPRGQ+EAGSERFARSAQEIG   KAG S
Subjt:  ------------------------VMPPRPSRRRRQNQDGTQDPTQSQSERGSSTPRGQDEAGSERFARSAQEIGFSSKAGGS

A0A5A7U9X4 DNA/RNA polymerases superfamily protein1.5e-1946.29Show/hide
Query:  PRGNRSSLQTGELDKT-----------------VEIELPVPDTRPTSAESSRSSSR--------------------------------------------
        PRGNR+SLQTGELDKT                 VEIELPVPDT PTSAESS S+S                                             
Subjt:  PRGNRSSLQTGELDKT-----------------VEIELPVPDTRPTSAESSRSSSR--------------------------------------------

Query:  -------------------VMPPRPSRRRRQNQDGTQDPTQSQSERGSSTPRGQDEAGSERFARSAQEIGFSSKA
                           VMPPR SRRRRQNQD  QDPTQ QSERGSSTPRGQ+EAGSERF RSAQEIG S +A
Subjt:  -------------------VMPPRPSRRRRQNQDGTQDPTQSQSERGSSTPRGQDEAGSERFARSAQEIGFSSKA

A0A5A7UAH6 CCHC-type domain-containing protein1.3e-2049.03Show/hide
Query:  PRGNRSSLQTGELDKTVEIELPVPDTRPTSAESSRSSSR------------------------------------------------------------V
        PRGNR +L TG+LDKTVEIELPVPDT PTSAESS+S+S                                                             V
Subjt:  PRGNRSSLQTGELDKTVEIELPVPDTRPTSAESSRSSSR------------------------------------------------------------V

Query:  MPPRPSRRRRQNQDGTQDPTQSQSERGSSTPRGQDEAGSERFARSAQEIGFSSKA
        MPPR SRRRRQNQDG Q PTQ QSERGSSTPRGQ+E GSERFARSAQEI    +A
Subjt:  MPPRPSRRRRQNQDGTQDPTQSQSERGSSTPRGQDEAGSERFARSAQEIGFSSKA

A0A5D3D150 Reverse transcriptase1.0e-0952.13Show/hide
Query:  GSERFARSAQEIGFSSKAGGSLVFSDVLGILRPRGNR-------LSLQT----GELDKTVEIELPVPDTRPTSAESSRSSSSTWLELYIESVHI
        G  RF R    I  SSK GG +VF D L IL    +         SL T     + D  VEIELPVPDT PTSAES  S+SSTWLELY ESVH+
Subjt:  GSERFARSAQEIGFSSKAGGSLVFSDVLGILRPRGNR-------LSLQT----GELDKTVEIELPVPDTRPTSAESSRSSSSTWLELYIESVHI

A0A5D3D150 Reverse transcriptase9.2e-2254.67Show/hide
Query:  PRGNRSSLQTGELDKT-----------------VEIELPVPDTRPTSAESSRSSSR-----------------------------------VMPPRPSRR
        PRGNR SLQTGELDKT                 VEIELPV DT P SAESS S+SR                                   VMPPR SRR
Subjt:  PRGNRSSLQTGELDKT-----------------VEIELPVPDTRPTSAESSRSSSR-----------------------------------VMPPRPSRR

Query:  RRQNQDGTQDPTQSQSERGSSTPRGQDEAGSERFARSAQEIGFSSKAGGS
        RRQN+D TQDPTQ QSERGSSTPRGQ+EA SERFARSAQEIG   KAG S
Subjt:  RRQNQDGTQDPTQSQSERGSSTPRGQDEAGSERFARSAQEIGFSSKAGGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CACTTCAAGGAGAAAGTGAAGGAGGAGGAAGAAGAAGAATTTCGTGGTTTGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAGGTCGAG
TCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCAGTGCCTGATACACGGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGAGTCATGCCACCAC
GTCCCAGCAGACGACGCAGGCAGAATCAGGACGGGACGCAGGATCCTACCCAAAGTCAATCTGAAAGGGGATCCAGTACCCCGAGAGGTCAGGATGAGGCAGGGAGTGAG
CGATTTGCTAGATCTGCACAGGAGATCGGATTTTCGAGCAAAGCAGGAGGATCTCTAGTTTTCTCTGATGTTTTGGGCATTCTGAGGCCAAGAGGAAATAGGTTGAGTCT
ACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACGGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGT
ATATTGAGTCCGTTCATATTGTAAATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
CACTTCAAGGAGAAAGTGAAGGAGGAGGAAGAAGAAGAATTTCGTGGTTTGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAGGTCGAG
TCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCAGTGCCTGATACACGGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGAGTCATGCCACCAC
GTCCCAGCAGACGACGCAGGCAGAATCAGGACGGGACGCAGGATCCTACCCAAAGTCAATCTGAAAGGGGATCCAGTACCCCGAGAGGTCAGGATGAGGCAGGGAGTGAG
CGATTTGCTAGATCTGCACAGGAGATCGGATTTTCGAGCAAAGCAGGAGGATCTCTAGTTTTCTCTGATGTTTTGGGCATTCTGAGGCCAAGAGGAAATAGGTTGAGTCT
ACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACGGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGT
ATATTGAGTCCGTTCATATTGTAAATGTTTTGTAA
Protein sequenceShow/hide protein sequence
HFKEKVKEEEEEEFRGLRAQDFRAKQEDLWPRGNRSSLQTGELDKTVEIELPVPDTRPTSAESSRSSSRVMPPRPSRRRRQNQDGTQDPTQSQSERGSSTPRGQDEAGSE
RFARSAQEIGFSSKAGGSLVFSDVLGILRPRGNRLSLQTGELDKTVEIELPVPDTRPTSAESSRSSSSTWLELYIESVHIVNVL