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Spg031186 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031186
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold8:29353806..29355606
RNA-Seq ExpressionSpg031186
SyntenySpg031186
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025361.1 uncharacterized protein E6C27_scaffold1204G00450 [Cucumis melo var. makuwa]5.1e-2781.61Show/hide
Query:  PLLTLSVLRDNDANVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        PL TLSVLRDNDA VEIELPV DTL   AESF S+SSYF NQVMSGLH V    FNVSVGST IVRGDDVCWLHAVFRAK AGGPGG
Subjt:  PLLTLSVLRDNDANVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]6.0e-2860.58Show/hide
Query:  IESGKSGKVECEYIEPEAIWYRVH---TGYIPLLTLSVLRDNDANVEIELPVPDTLPTSAESFRSSSS----------------YFPNQVMSGLHHVYVE
        IESGKSGK +       +         T   PL TLSVLRDNDA VEIELPVPDTLPTSAES  S+SS                YF NQVMS LH V   
Subjt:  IESGKSGKVECEYIEPEAIWYRVH---TGYIPLLTLSVLRDNDANVEIELPVPDTLPTSAESFRSSSS----------------YFPNQVMSGLHHVYVE

Query:  RFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
         F+V VGSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  RFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.8e-3167.74Show/hide
Query:  IESGKSGKVECEYIEPEAIWYRVHTGYI------PLLTLSVLRDNDANVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVR
        IESGKSGK       P      + TG +      PL T SVL DNDA VEIEL VPDTLPTSAES+ S+SSYF NQVMSGLH V    FNVSVGSTGIVR
Subjt:  IESGKSGKVECEYIEPEAIWYRVHTGYI------PLLTLSVLRDNDANVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVR

Query:  GDDVCWLHAVFRAKLAGGPGGGVT
        GDDVC LH VFRAK AGGPGGGVT
Subjt:  GDDVCWLHAVFRAKLAGGPGGGVT

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]2.7e-2880.68Show/hide
Query:  LLTLSVLRDNDANVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV
        L TLSVLRDNDA VEIELPVPDTLPTS ES  S+SSYF NQVMSGLH V    FN+SV STGIVRGDDVCWLHAVFRAK  GGP GGV
Subjt:  LLTLSVLRDNDANVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]6.0e-2860.58Show/hide
Query:  IESGKSGKVECEYIEPEAIWYRVH---TGYIPLLTLSVLRDNDANVEIELPVPDTLPTSAESFRSSSS----------------YFPNQVMSGLHHVYVE
        IESGKSGK +       +         T   PL TLSVLRDNDA VEIELPVPDTLPTSAES  S+SS                YF NQVMS LH V   
Subjt:  IESGKSGKVECEYIEPEAIWYRVH---TGYIPLLTLSVLRDNDANVEIELPVPDTLPTSAESFRSSSS----------------YFPNQVMSGLHHVYVE

Query:  RFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
         F+V VGSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  RFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7V9N3 Reverse transcriptase2.9e-2860.58Show/hide
Query:  IESGKSGKVECEYIEPEAIWYRVH---TGYIPLLTLSVLRDNDANVEIELPVPDTLPTSAESFRSSSS----------------YFPNQVMSGLHHVYVE
        IESGKSGK +       +         T   PL TLSVLRDNDA VEIELPVPDTLPTSAES  S+SS                YF NQVMS LH V   
Subjt:  IESGKSGKVECEYIEPEAIWYRVH---TGYIPLLTLSVLRDNDANVEIELPVPDTLPTSAESFRSSSS----------------YFPNQVMSGLHHVYVE

Query:  RFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
         F+V VGSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  RFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein2.8e-3167.74Show/hide
Query:  IESGKSGKVECEYIEPEAIWYRVHTGYI------PLLTLSVLRDNDANVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVR
        IESGKSGK       P      + TG +      PL T SVL DNDA VEIEL VPDTLPTSAES+ S+SSYF NQVMSGLH V    FNVSVGSTGIVR
Subjt:  IESGKSGKVECEYIEPEAIWYRVHTGYI------PLLTLSVLRDNDANVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVR

Query:  GDDVCWLHAVFRAKLAGGPGGGVT
        GDDVC LH VFRAK AGGPGGGVT
Subjt:  GDDVCWLHAVFRAKLAGGPGGGVT

A0A5D3BMJ4 Retrotrans_gag domain-containing protein1.3e-2880.68Show/hide
Query:  LLTLSVLRDNDANVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV
        L TLSVLRDNDA VEIELPVPDTLPTS ES  S+SSYF NQVMSGLH V    FN+SV STGIVRGDDVCWLHAVFRAK  GGP GGV
Subjt:  LLTLSVLRDNDANVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV

A0A5D3DIE3 Retrotrans_gag domain-containing protein2.5e-2781.61Show/hide
Query:  PLLTLSVLRDNDANVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        PL TLSVLRDNDA VEIELPV DTL   AESF S+SSYF NQVMSGLH V    FNVSVGST IVRGDDVCWLHAVFRAK AGGPGG
Subjt:  PLLTLSVLRDNDANVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5D3DSY7 Putative Retrotransposon protein2.9e-2860.58Show/hide
Query:  IESGKSGKVECEYIEPEAIWYRVH---TGYIPLLTLSVLRDNDANVEIELPVPDTLPTSAESFRSSSS----------------YFPNQVMSGLHHVYVE
        IESGKSGK +       +         T   PL TLSVLRDNDA VEIELPVPDTLPTSAES  S+SS                YF NQVMS LH V   
Subjt:  IESGKSGKVECEYIEPEAIWYRVH---TGYIPLLTLSVLRDNDANVEIELPVPDTLPTSAESFRSSSS----------------YFPNQVMSGLHHVYVE

Query:  RFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
         F+V VGSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  RFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGTATTGAGGAAGTTGTGGGTGTTGGAAGTTATGGTATAGAATCTGGAAAATCTGGAAAAGTAGA
ATGTGAATATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTAACGTAGAGATCGAGC
TCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTTTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTC
AACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCTGGTGGTCCTGGAGGGGGTGTGACATATGA
TGTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGTATTGAGGAAGTTGTGGGTGTTGGAAGTTATGGTATAGAATCTGGAAAATCTGGAAAAGTAGA
ATGTGAATATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTAACGTAGAGATCGAGC
TCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTTTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTC
AACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCTGGTGGTCCTGGAGGGGGTGTGACATATGA
TGTCTAG
Protein sequenceShow/hide protein sequence
MENRAQDFRAKQEDLCIEEVVGVGSYGIESGKSGKVECEYIEPEAIWYRVHTGYIPLLTLSVLRDNDANVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHHVYVERF
NVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTYDV