; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg031193 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031193
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold8:29145535..29150510
RNA-Seq ExpressionSpg031193
SyntenySpg031193
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]8.8e-2861.6Show/hide
Query:  KEVDSSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAATEKESQCQMSTSTRPSAFQRPSVSTSKKSQSSISVFDRFKVKDDQPQRKMDNLEVKLFDEVNGN
        +EVD+S + +QRTSVF+RIKP TTR  VFQR+SMA  E+E+QC MST  R SAF+R S+STSKK + S S FDR K+ +DQ QR+M + + K F E N +
Subjt:  KEVDSSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAATEKESQCQMSTSTRPSAFQRPSVSTSKKSQSSISVFDRFKVKDDQPQRKMDNLEVKLFDEVNGN

Query:  KKLHSSVPSRMKRKFSVLINTEGSL
         K+HS VPSRMKRK SV INTEGSL
Subjt:  KKLHSSVPSRMKRKFSVLINTEGSL

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.0e-2862.4Show/hide
Query:  KEVDSSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAATEKESQCQMSTSTRPSAFQRPSVSTSKKSQSSISVFDRFKVKDDQPQRKMDNLEVKLFDEVNGN
        +EVD+S + +QRTSVF+RIKP TTR SVFQR+SMA  E+E+QC  ST  R SAF+R S+STSKK + S S FDR K+ +DQ QR+M +L+ K F E N +
Subjt:  KEVDSSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAATEKESQCQMSTSTRPSAFQRPSVSTSKKSQSSISVFDRFKVKDDQPQRKMDNLEVKLFDEVNGN

Query:  KKLHSSVPSRMKRKFSVLINTEGSL
         K+HS VPSRMKRK SV INTEGSL
Subjt:  KKLHSSVPSRMKRKFSVLINTEGSL

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]3.0e-2861.6Show/hide
Query:  KEVDSSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAATEKESQCQMSTSTRPSAFQRPSVSTSKKSQSSISVFDRFKVKDDQPQRKMDNLEVKLFDEVNGN
        +EVD+S + +QRTS+F+RIKP TTR  VFQR+SMA  E+E+QC  ST  R SAF+R S+STSKK + S S FDR K+ +DQ QR+M +L+ K F E NG+
Subjt:  KEVDSSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAATEKESQCQMSTSTRPSAFQRPSVSTSKKSQSSISVFDRFKVKDDQPQRKMDNLEVKLFDEVNGN

Query:  KKLHSSVPSRMKRKFSVLINTEGSL
         K+HS VPSRMKRK SV INTEGSL
Subjt:  KKLHSSVPSRMKRKFSVLINTEGSL

TYK04576.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.2e-2857.78Show/hide
Query:  QIENQHIAESKEVDSSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAATEKESQCQMSTSTRPSAFQRPSVSTSKKSQSSISVFDRFKVKDDQPQRKMDNLE
        +++N +   SKEV++S +  QRTSVF+RIKPSTTR SVFQR+SMA  E+E+QC     TR S F+R S+STSKK + S S FDR K+K+DQ QR+M +L+
Subjt:  QIENQHIAESKEVDSSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAATEKESQCQMSTSTRPSAFQRPSVSTSKKSQSSISVFDRFKVKDDQPQRKMDNLE

Query:  VKLFDEVNGNKKLHSSVPSRMKRKFSVLINTEGSL
         K F E N + K+HS VPSRMKRK SV INTEG++
Subjt:  VKLFDEVNGNKKLHSSVPSRMKRKFSVLINTEGSL

TYK27425.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.8e-2857.78Show/hide
Query:  QIENQHIAESKEVDSSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAATEKESQCQMSTSTRPSAFQRPSVSTSKKSQSSISVFDRFKVKDDQPQRKMDNLE
        +++N  ++ SKEVD S + ++RTS+F+RIKPSTTR SVFQR+SMA  E+E+QC  S STR SAF+R S+STSKK + S SVF+R K+ +DQ QR+  +L+
Subjt:  QIENQHIAESKEVDSSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAATEKESQCQMSTSTRPSAFQRPSVSTSKKSQSSISVFDRFKVKDDQPQRKMDNLE

Query:  VKLFDEVNGNKKLHSSVPSRMKRKFSVLINTEGSL
         K F E N + K+HS VPS MKR  SV INTEGSL
Subjt:  VKLFDEVNGNKKLHSSVPSRMKRKFSVLINTEGSL

TrEMBL top hitse value%identityAlignment
A0A5A7TQ06 Retrotransposon gag protein1.5e-2862.4Show/hide
Query:  KEVDSSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAATEKESQCQMSTSTRPSAFQRPSVSTSKKSQSSISVFDRFKVKDDQPQRKMDNLEVKLFDEVNGN
        +EVD+S + +QRTSVF+RIKP TTR SVFQR+SMA  E+E+QC  ST  R SAF+R S+STSKK + S S FDR K+ +DQ QR+M +L+ K F E N +
Subjt:  KEVDSSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAATEKESQCQMSTSTRPSAFQRPSVSTSKKSQSSISVFDRFKVKDDQPQRKMDNLEVKLFDEVNGN

Query:  KKLHSSVPSRMKRKFSVLINTEGSL
         K+HS VPSRMKRK SV INTEGSL
Subjt:  KKLHSSVPSRMKRKFSVLINTEGSL

A0A5A7UV73 Retrotransposon gag protein4.3e-2858.52Show/hide
Query:  QIENQHIAESKEVDSSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAATEKESQCQMSTSTRPSAFQRPSVSTSKKSQSSISVFDRFKVKDDQPQRKMDNLE
        +++N +   SKEV++S K  QRTS+F+RIKPSTTR SVFQR+SMA  E+E+QC     TR S F+R S+STSKK + S S FDR K+ +DQ QR+M +L+
Subjt:  QIENQHIAESKEVDSSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAATEKESQCQMSTSTRPSAFQRPSVSTSKKSQSSISVFDRFKVKDDQPQRKMDNLE

Query:  VKLFDEVNGNKKLHSSVPSRMKRKFSVLINTEGSL
         K F E N   K+HS VPSRMKRK SV INTEGSL
Subjt:  VKLFDEVNGNKKLHSSVPSRMKRKFSVLINTEGSL

A0A5D3BBF9 Gag protease polyprotein1.5e-2861.6Show/hide
Query:  KEVDSSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAATEKESQCQMSTSTRPSAFQRPSVSTSKKSQSSISVFDRFKVKDDQPQRKMDNLEVKLFDEVNGN
        +EVD+S + +QRTS+F+RIKP TTR  VFQR+SMA  E+E+QC  ST  R SAF+R S+STSKK + S S FDR K+ +DQ QR+M +L+ K F E NG+
Subjt:  KEVDSSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAATEKESQCQMSTSTRPSAFQRPSVSTSKKSQSSISVFDRFKVKDDQPQRKMDNLEVKLFDEVNGN

Query:  KKLHSSVPSRMKRKFSVLINTEGSL
         K+HS VPSRMKRK SV INTEGSL
Subjt:  KKLHSSVPSRMKRKFSVLINTEGSL

A0A5D3C2C8 Retrotransposon gag protein2.5e-2857.78Show/hide
Query:  QIENQHIAESKEVDSSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAATEKESQCQMSTSTRPSAFQRPSVSTSKKSQSSISVFDRFKVKDDQPQRKMDNLE
        +++N +   SKEV++S +  QRTSVF+RIKPSTTR SVFQR+SMA  E+E+QC     TR S F+R S+STSKK + S S FDR K+K+DQ QR+M +L+
Subjt:  QIENQHIAESKEVDSSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAATEKESQCQMSTSTRPSAFQRPSVSTSKKSQSSISVFDRFKVKDDQPQRKMDNLE

Query:  VKLFDEVNGNKKLHSSVPSRMKRKFSVLINTEGSL
         K F E N + K+HS VPSRMKRK SV INTEG++
Subjt:  VKLFDEVNGNKKLHSSVPSRMKRKFSVLINTEGSL

A0A5D3DVW2 Retrotransposon gag protein4.3e-2857.78Show/hide
Query:  QIENQHIAESKEVDSSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAATEKESQCQMSTSTRPSAFQRPSVSTSKKSQSSISVFDRFKVKDDQPQRKMDNLE
        +++N  ++ SKEVD S + ++RTS+F+RIKPSTTR SVFQR+SMA  E+E+QC  S STR SAF+R S+STSKK + S SVF+R K+ +DQ QR+  +L+
Subjt:  QIENQHIAESKEVDSSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAATEKESQCQMSTSTRPSAFQRPSVSTSKKSQSSISVFDRFKVKDDQPQRKMDNLE

Query:  VKLFDEVNGNKKLHSSVPSRMKRKFSVLINTEGSL
         K F E N + K+HS VPS MKR  SV INTEGSL
Subjt:  VKLFDEVNGNKKLHSSVPSRMKRKFSVLINTEGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAAAGGTCAATCCTCTCACACACATAATGGCCCTCATGATCAGTATGTGACGTATCGAGATCCTAATCATGGCATATTCATTCGAGATGAGGGTGAGAGGTCAAA
TACGAGAGGTCGAGGTCAAAAAGCAACCTTGCAGGGGGCATATACTAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACTTGATTCTGACGTAGTGACTGTCA
TGATGACTGAGACAAGAATTATGGAAGAAAGAATGGTTGAGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGCTCAACTAAAG
AGCCAGATTGAGAACCAACATATCGCCGAATCAAAAGAGGTTGACAGTTCTAAGAAGGGTGAACAAAGGACTTCCGTCTTCAATCGCATTAAGCCTTCAACTACTCGTCC
TTCAGTATTCCAAAGAATGAGTATGGCCGCGACAGAAAAAGAAAGTCAATGTCAGATGTCCACATCCACTCGACCTTCAGCTTTCCAAAGGCCAAGTGTTTCTACATCGA
AGAAAAGTCAATCTTCAATATCTGTCTTTGATCGCTTCAAAGTAAAAGACGATCAACCTCAAAGAAAAATGGATAACTTAGAGGTGAAACTATTCGATGAAGTAAACGGT
AACAAGAAGCTTCATAGTAGTGTCCCGTCACGTATGAAGAGAAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTAAAGGAGTGCATCACTAAAGGCAAATCTGGTGA
CTACCCCTGCAGGCTACTCAGATCATCCAATAAGATGGAGACTGGTCTAGCAGGAGCGCATCACTGTGGACGAATCTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAAAGGTCAATCCTCTCACACACATAATGGCCCTCATGATCAGTATGTGACGTATCGAGATCCTAATCATGGCATATTCATTCGAGATGAGGGTGAGAGGTCAAA
TACGAGAGGTCGAGGTCAAAAAGCAACCTTGCAGGGGGCATATACTAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACTTGATTCTGACGTAGTGACTGTCA
TGATGACTGAGACAAGAATTATGGAAGAAAGAATGGTTGAGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGCTCAACTAAAG
AGCCAGATTGAGAACCAACATATCGCCGAATCAAAAGAGGTTGACAGTTCTAAGAAGGGTGAACAAAGGACTTCCGTCTTCAATCGCATTAAGCCTTCAACTACTCGTCC
TTCAGTATTCCAAAGAATGAGTATGGCCGCGACAGAAAAAGAAAGTCAATGTCAGATGTCCACATCCACTCGACCTTCAGCTTTCCAAAGGCCAAGTGTTTCTACATCGA
AGAAAAGTCAATCTTCAATATCTGTCTTTGATCGCTTCAAAGTAAAAGACGATCAACCTCAAAGAAAAATGGATAACTTAGAGGTGAAACTATTCGATGAAGTAAACGGT
AACAAGAAGCTTCATAGTAGTGTCCCGTCACGTATGAAGAGAAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTAAAGGAGTGCATCACTAAAGGCAAATCTGGTGA
CTACCCCTGCAGGCTACTCAGATCATCCAATAAGATGGAGACTGGTCTAGCAGGAGCGCATCACTGTGGACGAATCTGGTGA
Protein sequenceShow/hide protein sequence
MEKGQSSHTHNGPHDQYVTYRDPNHGIFIRDEGERSNTRGRGQKATLQGAYTNDKFLVKYNPLFELDSDVVTVMMTETRIMEERMVEMQEHINTLMKAIEEKDSQIAQLK
SQIENQHIAESKEVDSSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAATEKESQCQMSTSTRPSAFQRPSVSTSKKSQSSISVFDRFKVKDDQPQRKMDNLEVKLFDEVNG
NKKLHSSVPSRMKRKFSVLINTEGSLKECITKGKSGDYPCRLLRSSNKMETGLAGAHHCGRIW