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Spg031244 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031244
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold2:36360872..36368126
RNA-Seq ExpressionSpg031244
SyntenySpg031244
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.2e-2768.27Show/hide
Query:  LGLRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRF----NVSV-------GSTGIVRGDDVCWLHAVFRAKLAGGP
        L + PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+SSTWLELY ESV  +  F    +V V       GS GIVRGDD+CWLHAVF AK AG P
Subjt:  LGLRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRF----NVSV-------GSTGIVRGDDVCWLHAVFRAKLAGGP

Query:  GGGV
        GGGV
Subjt:  GGGV

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]2.1e-2757.34Show/hide
Query:  QVYNEENFKEGVKEEEEEEFLGLRPRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR-
        ++ N EN K G+            PRGNR SLQT ELDKT               V IELPVPD LPTSAESS S+SSTWLELY ESV      +F  + 
Subjt:  QVYNEENFKEGVKEEEEEEFLGLRPRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR-

Query:  -------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
               FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  -------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]6.0e-2762.5Show/hide
Query:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVGSTGIVRGDDV
        RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SSTWLELY ESV                   F+V VGSTGIVRGDDV
Subjt:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVGSTGIVRGDDV

Query:  CWLHAVFRAKLAGGPGGGVT
        CWLHAVFRAK  GGPGGGVT
Subjt:  CWLHAVFRAKLAGGPGGGVT

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]2.9e-2965.85Show/hide
Query:  LGLRPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FNVSVGSTGIVRG
        L L PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS S+SSTWLELY ESV      +F  +        FNVSVGSTGIVRG
Subjt:  LGLRPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FNVSVGSTGIVRG

Query:  DDVCWLHAVFRAKLAGGPGGGVT
        DDVCWLHAVFRAK  GGPGGGVT
Subjt:  DDVCWLHAVFRAKLAGGPGGGVT

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]6.0e-2762.5Show/hide
Query:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVGSTGIVRGDDV
        RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SSTWLELY ESV                   F+V VGSTGIVRGDDV
Subjt:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVGSTGIVRGDDV

Query:  CWLHAVFRAKLAGGPGGGVT
        CWLHAVFRAK  GGPGGGVT
Subjt:  CWLHAVFRAKLAGGPGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7UAH6 CCHC-type domain-containing protein5.9e-2868.27Show/hide
Query:  LGLRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRF----NVSV-------GSTGIVRGDDVCWLHAVFRAKLAGGP
        L + PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+SSTWLELY ESV  +  F    +V V       GS GIVRGDD+CWLHAVF AK AG P
Subjt:  LGLRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRF----NVSV-------GSTGIVRGDDVCWLHAVFRAKLAGGP

Query:  GGGV
        GGGV
Subjt:  GGGV

A0A5A7UT17 CCHC-type domain-containing protein1.0e-2757.34Show/hide
Query:  QVYNEENFKEGVKEEEEEEFLGLRPRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR-
        ++ N EN K G+            PRGNR SLQT ELDKT               V IELPVPD LPTSAESS S+SSTWLELY ESV      +F  + 
Subjt:  QVYNEENFKEGVKEEEEEEFLGLRPRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR-

Query:  -------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
               FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  -------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

A0A5A7V9N3 Reverse transcriptase2.9e-2762.5Show/hide
Query:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVGSTGIVRGDDV
        RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SSTWLELY ESV                   F+V VGSTGIVRGDDV
Subjt:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVGSTGIVRGDDV

Query:  CWLHAVFRAKLAGGPGGGVT
        CWLHAVFRAK  GGPGGGVT
Subjt:  CWLHAVFRAKLAGGPGGGVT

A0A5D3CJX3 CCHC-type domain-containing protein1.4e-2965.85Show/hide
Query:  LGLRPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FNVSVGSTGIVRG
        L L PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS S+SSTWLELY ESV      +F  +        FNVSVGSTGIVRG
Subjt:  LGLRPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FNVSVGSTGIVRG

Query:  DDVCWLHAVFRAKLAGGPGGGVT
        DDVCWLHAVFRAK  GGPGGGVT
Subjt:  DDVCWLHAVFRAKLAGGPGGGVT

A0A5D3DSY7 Putative Retrotransposon protein2.9e-2762.5Show/hide
Query:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVGSTGIVRGDDV
        RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SSTWLELY ESV                   F+V VGSTGIVRGDDV
Subjt:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVGSTGIVRGDDV

Query:  CWLHAVFRAKLAGGPGGGVT
        CWLHAVFRAK  GGPGGGVT
Subjt:  CWLHAVFRAKLAGGPGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAGAACGGTCAAGTCTACAACGAAGAGAACTTTAAGGAGGGAGTGAAGGAGGAGGAAGAAGAAGAATTTCTTGGTTTGAGGCCAAGAGGAAATAGGTCGAGTCT
ACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGT
ATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTA
GCAGGTGGTCCGGGAGGGGGTGTGACAGTAGAATTCACAGTTAACGGGTTAATTAAACACAAGTTAGTATTAAATTCACCAACTGCTTGTGAAATAATCACGAACTACTG
CGAACACCACCACTATGGCTACATCGGTATGACTCTGAGACTTCTAGAGGCAGGAGACTTGTGGGAGTCTAGAGGGAGCCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGAAGAACGGTCAAGTCTACAACGAAGAGAACTTTAAGGAGGGAGTGAAGGAGGAGGAAGAAGAAGAATTTCTTGGTTTGAGGCCAAGAGGAAATAGGTCGAGTCT
ACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGT
ATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTA
GCAGGTGGTCCGGGAGGGGGTGTGACAGTAGAATTCACAGTTAACGGGTTAATTAAACACAAGTTAGTATTAAATTCACCAACTGCTTGTGAAATAATCACGAACTACTG
CGAACACCACCACTATGGCTACATCGGTATGACTCTGAGACTTCTAGAGGCAGGAGACTTGTGGGAGTCTAGAGGGAGCCTTTAG
Protein sequenceShow/hide protein sequence
MAKNGQVYNEENFKEGVKEEEEEEFLGLRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKL
AGGPGGGVTVEFTVNGLIKHKLVLNSPTACEIITNYCEHHHYGYIGMTLRLLEAGDLWESRGSL