; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg031296 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031296
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionYqgFc domain-containing protein
Genome locationscaffold11:44629035..44632893
RNA-Seq ExpressionSpg031296
SyntenySpg031296
Gene Ontology termsGO:0000967 - rRNA 5'-end processing (biological process)
InterPro domainsIPR005227 - Putative pre-16S rRNA nuclease
IPR006641 - YqgF/RNase H-like domain
IPR012337 - Ribonuclease H-like superfamily
IPR037027 - YqgF/RNase H-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582728.1 hypothetical protein SDJN03_22730, partial [Cucurbita argyrosperma subsp. sororia]5.4e-6980.34Show/hide
Query:  MCAQHFKPFPLQSHILSNHNL----RSSTILRF---PNLICKCVPETRAISAVELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLE
        MCA HF+PFPLQSH L +  +    R S++      PNLICKC     AIS+VELPPNALRRKLDP WRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLE
Subjt:  MCAQHFKPFPLQSHILSNHNL----RSSTILRF---PNLICKCVPETRAISAVELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLE

Query:  LRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTEDAESHMISR
        LRGQKLE KLIEIAEQEEADEFIIGLPKS DGKETP SNKIRSIAGRVAA+AAERGWRVYLHDEHGTT +AESHMI R
Subjt:  LRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTEDAESHMISR

XP_022144406.1 uncharacterized protein LOC111014097 isoform X1 [Momordica charantia]1.2e-7382.12Show/hide
Query:  MCAQHFKPFPLQSHILSNHNLRSSTILRFPN--------LICKCVPETRAISAVELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVL
        M +QHF+PFP QS I SN  L+SSTIL  P         L C CV ETRAIS++ELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVL
Subjt:  MCAQHFKPFPLQSHILSNHNLRSSTILRFPN--------LICKCVPETRAISAVELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVL

Query:  ELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTEDAESHMISR
        ELRG KLEVKLIEIAEQEEADEFIIGLPKS DGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTT +AE+HMI +
Subjt:  ELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTEDAESHMISR

XP_022144424.1 uncharacterized protein LOC111014097 isoform X3 [Momordica charantia]1.2e-7382.12Show/hide
Query:  MCAQHFKPFPLQSHILSNHNLRSSTILRFPN--------LICKCVPETRAISAVELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVL
        M +QHF+PFP QS I SN  L+SSTIL  P         L C CV ETRAIS++ELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVL
Subjt:  MCAQHFKPFPLQSHILSNHNLRSSTILRFPN--------LICKCVPETRAISAVELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVL

Query:  ELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTEDAESHMISR
        ELRG KLEVKLIEIAEQEEADEFIIGLPKS DGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTT +AE+HMI +
Subjt:  ELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTEDAESHMISR

XP_022979278.1 uncharacterized protein LOC111479048 [Cucurbita maxima]1.4e-6980.9Show/hide
Query:  MCAQHFKPFPLQSHILSNHNL----RSSTILRF---PNLICKCVPETRAISAVELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLE
        MCA HF+PFPLQSH L +  +    R S++      PNLICKC     AIS+VELPPNALRRKLDP WRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLE
Subjt:  MCAQHFKPFPLQSHILSNHNL----RSSTILRF---PNLICKCVPETRAISAVELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLE

Query:  LRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTEDAESHMISR
        LRGQKLE KLIEIAEQEEADEFIIGLPKS DGKETPQSNKIRSIAGRVAA+AAERGWRVYLHDEHGTT +AESHMI R
Subjt:  LRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTEDAESHMISR

XP_023528266.1 uncharacterized protein LOC111791236 [Cucurbita pepo subsp. pepo]9.3e-6980.34Show/hide
Query:  MCAQHFKPFPLQSHILSNHNL----RSSTILRF---PNLICKCVPETRAISAVELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLE
        MCA HF+PFP QSH L +  +    R S++      PNLICKC     AIS+VELPPNALRRKLDP WRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLE
Subjt:  MCAQHFKPFPLQSHILSNHNL----RSSTILRF---PNLICKCVPETRAISAVELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLE

Query:  LRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTEDAESHMISR
        LRGQKLE KLIEIAEQEEADEFIIGLPKS DGKETPQSNKIRSIAGRVAA+AAERGWRVYLHDEHGTT +AESHMI R
Subjt:  LRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTEDAESHMISR

TrEMBL top hitse value%identityAlignment
A0A0A0L3L5 YqgFc domain-containing protein4.3e-6481.6Show/hide
Query:  FPLQSHILSNHNLRSSTILRFPNLICKCVPETRAISAVELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAE
        FPLQ+H L +           P LI K       IS++ELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLE KLIEIAE
Subjt:  FPLQSHILSNHNLRSSTILRFPNLICKCVPETRAISAVELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAE

Query:  QEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTEDAESHMISR
        QEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYL+DEHGTT +AESHMISR
Subjt:  QEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTEDAESHMISR

A0A6J1CS97 uncharacterized protein LOC111014097 isoform X36.0e-7482.12Show/hide
Query:  MCAQHFKPFPLQSHILSNHNLRSSTILRFPN--------LICKCVPETRAISAVELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVL
        M +QHF+PFP QS I SN  L+SSTIL  P         L C CV ETRAIS++ELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVL
Subjt:  MCAQHFKPFPLQSHILSNHNLRSSTILRFPN--------LICKCVPETRAISAVELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVL

Query:  ELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTEDAESHMISR
        ELRG KLEVKLIEIAEQEEADEFIIGLPKS DGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTT +AE+HMI +
Subjt:  ELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTEDAESHMISR

A0A6J1CTB8 uncharacterized protein LOC111014097 isoform X16.0e-7482.12Show/hide
Query:  MCAQHFKPFPLQSHILSNHNLRSSTILRFPN--------LICKCVPETRAISAVELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVL
        M +QHF+PFP QS I SN  L+SSTIL  P         L C CV ETRAIS++ELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVL
Subjt:  MCAQHFKPFPLQSHILSNHNLRSSTILRFPN--------LICKCVPETRAISAVELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVL

Query:  ELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTEDAESHMISR
        ELRG KLEVKLIEIAEQEEADEFIIGLPKS DGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTT +AE+HMI +
Subjt:  ELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTEDAESHMISR

A0A6J1EA74 uncharacterized protein LOC1114321857.6e-6980.34Show/hide
Query:  MCAQHFKPFPLQSHILSNHNL----RSSTILRF---PNLICKCVPETRAISAVELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLE
        MCA HF+PFPLQS  L +  +    R S++      PNLICKC     AIS+VELPPNALRRKLDP WRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLE
Subjt:  MCAQHFKPFPLQSHILSNHNL----RSSTILRF---PNLICKCVPETRAISAVELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLE

Query:  LRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTEDAESHMISR
        LRGQKLE KLIEIAEQEEADEFIIGLPKS DGKETPQSNKIRSIAGRVAA+AAERGWRVYLHDEHGTT +AESHMI R
Subjt:  LRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTEDAESHMISR

A0A6J1IVR0 uncharacterized protein LOC1114790486.9e-7080.9Show/hide
Query:  MCAQHFKPFPLQSHILSNHNL----RSSTILRF---PNLICKCVPETRAISAVELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLE
        MCA HF+PFPLQSH L +  +    R S++      PNLICKC     AIS+VELPPNALRRKLDP WRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLE
Subjt:  MCAQHFKPFPLQSHILSNHNL----RSSTILRF---PNLICKCVPETRAISAVELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLE

Query:  LRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTEDAESHMISR
        LRGQKLE KLIEIAEQEEADEFIIGLPKS DGKETPQSNKIRSIAGRVAA+AAERGWRVYLHDEHGTT +AESHMI R
Subjt:  LRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTEDAESHMISR

SwissProt top hitse value%identityAlignment
A1SJC8 Putative pre-16S rRNA nuclease6.6e-0939.64Show/hide
Query:  RGGFSLGVDLGTSRTGLALS--KGFSTRPL-TVLELRGQKLEVKLIEIAEQEEAD---EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLH
        R G  +G+D G +R G+A S   GF   P+ TV   +G    +  I  AE++E     E ++GLP+S  G+E P + K+R  AGR+AAR A     V L 
Subjt:  RGGFSLGVDLGTSRTGLALS--KGFSTRPL-TVLELRGQKLEVKLIEIAEQEEAD---EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLH

Query:  DEHGTTEDAES
        DE  TT  AE+
Subjt:  DEHGTTEDAES

A5D3C3 Putative pre-16S rRNA nuclease9.8e-0529.91Show/hide
Query:  LGVDLGTSRTGLALS--KGFSTRPLTVLELRG--QKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTE
        +G+DLG  + G+ALS   G++ + L V+ ++G  +    ++ E+  Q    + ++GLP++ +G   P++ + R+ AG +A         V L DE  TT 
Subjt:  LGVDLGTSRTGLALS--KGFSTRPLTVLELRG--QKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTE

Query:  DAESHMI
        +AE  +I
Subjt:  DAESHMI

B8DIJ5 Putative pre-16S rRNA nuclease6.8e-0631.43Show/hide
Query:  LGVDLGTSRTGLALSK--GFSTRP-LTVLELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTED
        LG+D GT RTG+A S   G    P  T++     +   +L+ +AE+E A+ +++GLP   DG +T  + ++R+   R+  R       VYL +E  ++ +
Subjt:  LGVDLGTSRTGLALSK--GFSTRP-LTVLELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTED

Query:  AESHM
        AE  +
Subjt:  AESHM

B8EPC5 Putative pre-16S rRNA nuclease1.2e-0537.5Show/hide
Query:  LGVDLGTSRTGLALS---KGFSTRPLTVLELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAA
        +G+DLGT   GLALS   +  +T   T+  ++  K  V+LIE+AE+ +A   IIGLP + DG + P+    R+    ++A
Subjt:  LGVDLGTSRTGLALS---KGFSTRPLTVLELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAA

Q2G9X2 Putative pre-16S rRNA nuclease3.4e-0530.36Show/hide
Query:  GGFSLGVDLGTSRTGLALSK---GFSTRPLTVLELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHG
        GG  +G+D GT   G+AL      F+T   T+   +    + ++  I  +      +IGLP + DG E+P+S   R++A  +     + G  + L DE  
Subjt:  GGFSLGVDLGTSRTGLALSK---GFSTRPLTVLELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHG

Query:  TTEDAESHMISR
        TT+ AE  MI +
Subjt:  TTEDAESHMISR

Arabidopsis top hitse value%identityAlignment
AT1G12244.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.0e-5063.33Show/hide
Query:  LRSSTILRFPNLICKCVPETRAISAV-ELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEEADEFIIGL
        + +S + R   +  +  P   A++++ E+PPNA+RRK+D +WRGGFSLGVDLG SRTG+A+SKG++ +PLTVL+ RGQKLE +L+EIAE+EEADEFIIGL
Subjt:  LRSSTILRFPNLICKCVPETRAISAV-ELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEEADEFIIGL

Query:  PKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTEDAESHMI
        P+S DGKET QSNKIRS+AGR+A +AAERGWRVY+ DEHGTT +A   MI
Subjt:  PKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTEDAESHMI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAATGTGTGCGCAACATTTCAAACCATTTCCGCTGCAAAGCCACATCCTCAGCAACCACAATCTTCGCTCTTCGACGATACTCAGGTTTCCAAACCTAATCTGCAA
ATGCGTTCCCGAAACAAGGGCGATTTCCGCCGTTGAACTTCCTCCCAATGCCCTTCGCCGCAAGCTCGACCCTCACTGGAGAGGAGGTTTCAGTCTAGGGGTCGACCTCG
GAACGTCTCGCACTGGACTTGCTCTTAGTAAAGGCTTCTCTACTCGTCCTCTCACCGTTTTGGAGTTGCGCGGACAAAAGCTTGAAGTTAAGCTTATTGAGATTGCTGAA
CAGGAGGAAGCTGATGAATTTATTATTGGACTTCCTAAATCATGTGACGGAAAAGAGACACCTCAGTCGAACAAGATTCGTAGTATTGCCGGAAGGGTGGCAGCTCGAGC
AGCTGAAAGGGGTTGGAGGGTTTACCTGCATGATGAACACGGGACAACAGAAGATGCGGAAAGCCATATGATTTCCAGGTATTGTTGTCCTCAGAACTTATGTTGTCTTT
TGCTTAATATTGTTATCGTGGATTCTATCCTATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCAATGTGTGCGCAACATTTCAAACCATTTCCGCTGCAAAGCCACATCCTCAGCAACCACAATCTTCGCTCTTCGACGATACTCAGGTTTCCAAACCTAATCTGCAA
ATGCGTTCCCGAAACAAGGGCGATTTCCGCCGTTGAACTTCCTCCCAATGCCCTTCGCCGCAAGCTCGACCCTCACTGGAGAGGAGGTTTCAGTCTAGGGGTCGACCTCG
GAACGTCTCGCACTGGACTTGCTCTTAGTAAAGGCTTCTCTACTCGTCCTCTCACCGTTTTGGAGTTGCGCGGACAAAAGCTTGAAGTTAAGCTTATTGAGATTGCTGAA
CAGGAGGAAGCTGATGAATTTATTATTGGACTTCCTAAATCATGTGACGGAAAAGAGACACCTCAGTCGAACAAGATTCGTAGTATTGCCGGAAGGGTGGCAGCTCGAGC
AGCTGAAAGGGGTTGGAGGGTTTACCTGCATGATGAACACGGGACAACAGAAGATGCGGAAAGCCATATGATTTCCAGGTATTGTTGTCCTCAGAACTTATGTTGTCTTT
TGCTTAATATTGTTATCGTGGATTCTATCCTATAA
Protein sequenceShow/hide protein sequence
MSMCAQHFKPFPLQSHILSNHNLRSSTILRFPNLICKCVPETRAISAVELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAE
QEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTEDAESHMISRYCCPQNLCCLLLNIVIVDSIL