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Spg031372 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031372
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S21
Genome locationscaffold11:38000979..38003061
RNA-Seq ExpressionSpg031372
SyntenySpg031372
Gene Ontology termsGO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001931 - Ribosomal protein S21e
IPR038579 - Ribosomal protein S21e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3792868.1 putative pentatricopeptide repeat-containing protein [Nymphaea thermarum]3.3e-2795.38Show/hide
Query:  YSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ
        +SATNRLITSKDHASVQINIGHLDENGIYTGQF+TFALCGFIRAQGDADSALDRLWQKKKAE+RQ
Subjt:  YSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ

XP_004134210.2 40S ribosomal protein S21-2 [Cucumis sativus]1.9e-2798.46Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

XP_004143089.1 40S ribosomal protein S21-2 [Cucumis sativus]6.6e-28100Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

XP_015899959.1 40S ribosomal protein S21-2 isoform X1 [Ziziphus jujuba]1.5e-2795.38Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        SATNRLITSKDHASVQIN+GHLDENG+YTGQFSTFALCGF+RAQGDADSALDRLWQKKKAEVRQQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

XP_022138832.1 40S ribosomal protein S21-2-like [Momordica charantia]1.5e-2798.46Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        SATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

TrEMBL top hitse value%identityAlignment
A0A0A0KHD3 40S ribosomal protein S213.2e-28100Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

A0A1S4DSM1 40S ribosomal protein S219.2e-2898.46Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

A0A5D3CXC9 40S ribosomal protein S219.2e-2898.46Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

A0A6J1CCB6 40S ribosomal protein S217.1e-2898.46Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        SATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

A0A6P4AVV3 40S ribosomal protein S217.1e-2895.38Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        SATNRLITSKDHASVQIN+GHLDENG+YTGQFSTFALCGF+RAQGDADSALDRLWQKKKAEVRQQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

SwissProt top hitse value%identityAlignment
P35687 40S ribosomal protein S212.9e-2684.62Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        SATNR+IT+KDHASVQINIGH+DENG+Y G+F+TFAL GFIRAQGDADSALDRLWQK+KAEV+QQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

Q3E902 40S ribosomal protein S21-21.7e-2684.38Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ
        SATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +Q
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ

Q41852 40S ribosomal protein S215.4e-2581.25Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ
        SATNR+IT+KDHASVQINIGHLD NG+Y G F+TFAL GF+RAQGDADS+LDRLWQKKKAE++Q
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ

Q9M337 40S ribosomal protein S21-17.5e-2783.08Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +QQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

Q9SMI2 40S ribosomal protein S211.3e-1563.79Show/hide
Query:  SATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIRAQGDADSALDRLWQK
        SATNRLI++ DHA+VQIN+GH+D N G+YTG ++TFALCGF+R+ G++D+AL+RL  K
Subjt:  SATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIRAQGDADSALDRLWQK

Arabidopsis top hitse value%identityAlignment
AT3G53890.1 Ribosomal protein S21e5.3e-2883.08Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +QQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

AT3G53890.2 Ribosomal protein S21e5.3e-2883.08Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +QQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

AT5G27700.1 Ribosomal protein S21e1.2e-2784.38Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ
        SATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +Q
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCGTAATATTATCTACTCTGCCACGAATCGGCTGATTACTTCCAAGGACCATGCTTCTGTCCAGATCAACATTGGGCATCTGGATGAGAATGGCATCTACACTGG
CCAGTTCTCCACTTTTGCTCTCTGTGGTTTCATTCGGGCTCAGGGAGATGCTGACAGTGCACTGGATCGGCTCTGGCAGAAGAAGAAAGCCGAAGTGCGTCAACAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTCGTAATATTATCTACTCTGCCACGAATCGGCTGATTACTTCCAAGGACCATGCTTCTGTCCAGATCAACATTGGGCATCTGGATGAGAATGGCATCTACACTGG
CCAGTTCTCCACTTTTGCTCTCTGTGGTTTCATTCGGGCTCAGGGAGATGCTGACAGTGCACTGGATCGGCTCTGGCAGAAGAAGAAAGCCGAAGTGCGTCAACAATAG
Protein sequenceShow/hide protein sequence
MVRNIIYSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ