CuGenDBv2

Gene ID	Spg031404
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA repair protein RAD50
Genome location	scaffold11:41782435..41783330
RNA-Seq Expression	Spg031404
Synteny	Spg031404
Gene Ontology terms	GO:0000722 - telomere maintenance via recombination (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0070192 - chromosome organization involved in meiotic cell cycle (biological process) GO:0032508 - DNA duplex unwinding (biological process) GO:0006302 - double-strand break repair (biological process) GO:0007004 - telomere maintenance via telomerase (biological process) GO:0016233 - telomere capping (biological process) GO:0000794 - condensed nuclear chromosome (cellular component) GO:0030870 - Mre11 complex (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0016887 - ATPase activity (molecular function) GO:0043047 - single-stranded telomeric DNA binding (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0051880 - G-quadruplex DNA binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0003691 - double-stranded telomeric DNA binding (molecular function)
InterPro domains	IPR001356 - Homeobox domain IPR009057 - Homeobox-like domain superfamily IPR027417 - P-loop containing nucleoside triphosphate hydrolase IPR038729 - Rad50/SbcC-type AAA domain

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004133980.1 DNA repair protein RAD50 isoform X1 [Cucumis sativus]

1.1e-22

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Query:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR
        MSTVDKMLIKGIRSFD ENRNVITFFKPLTLIVGPNGAGKT IIECLKLS TGELPPNAR
Subjt:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR

XP_008438322.1 PREDICTED: DNA repair protein RAD50 [Cucumis melo]

1.1e-22

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Query:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR
        MSTVDKMLIKGIRSFD ENRNVITFFKPLTLIVGPNGAGKT IIECLKLS TGELPPNAR
Subjt:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR

XP_022146955.1 DNA repair protein RAD50 [Momordica charantia]

1.1e-22

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Query:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR
        MSTVDKMLIKGIRSFD ENRNVITFFKPLTLIVGPNGAGKT IIECLKLS TGELPPNAR
Subjt:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR

XP_022980190.1 DNA repair protein RAD50 [Cucurbita maxima]

1.1e-22

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Query:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR
        MSTVDKMLIKGIRSFD ENRNVITFFKPLTLIVGPNGAGKT IIECLKLS TGELPPNAR
Subjt:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR

XP_038891799.1 DNA repair protein RAD50 isoform X1 [Benincasa hispida]

1.1e-22

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Query:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR
        MSTVDKMLIKGIRSFD ENRNVITFFKPLTLIVGPNGAGKT IIECLKLS TGELPPNAR
Subjt:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L416 Zinc-hook domain-containing protein

5.2e-23

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Query:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR
        MSTVDKMLIKGIRSFD ENRNVITFFKPLTLIVGPNGAGKT IIECLKLS TGELPPNAR
Subjt:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR

A0A5A7U014 DNA repair protein RAD50

5.2e-23

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Query:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR
        MSTVDKMLIKGIRSFD ENRNVITFFKPLTLIVGPNGAGKT IIECLKLS TGELPPNAR
Subjt:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR

A0A5D3D3I4 DNA repair protein RAD50

5.2e-23

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Query:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR
        MSTVDKMLIKGIRSFD ENRNVITFFKPLTLIVGPNGAGKT IIECLKLS TGELPPNAR
Subjt:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR

A0A6J1CYT2 DNA repair protein RAD50

5.2e-23

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Query:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR
        MSTVDKMLIKGIRSFD ENRNVITFFKPLTLIVGPNGAGKT IIECLKLS TGELPPNAR
Subjt:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR

A0A6J1IVK4 DNA repair protein RAD50

5.2e-23

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Query:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR
        MSTVDKMLIKGIRSFD ENRNVITFFKPLTLIVGPNGAGKT IIECLKLS TGELPPNAR
Subjt:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR

SwissProt top hits

e value

%identity

Alignment

P12753 DNA repair protein RAD50

3.9e-15

63.33

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Query:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR
        MS + K+ I+GIRSFD+ +R  I F KPLTLIVG NG+GKT IIECLK + TG+LPPN++
Subjt:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR

Q54CS9 DNA repair protein RAD50

6.0e-16

63.79

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Query:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPN
        M++++K+L++GIRSFD    +VI F+ PLTLIVG NGAGKT IIECLK + TGE+PPN
Subjt:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPN

Q92878 DNA repair protein RAD50

4.3e-14

58.06

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Query:  MSTVDKMLIKGIRSFDTENRN--VITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR
        MS ++KM I G+RSF  E+++  +ITFF PLT++VGPNGAGKT IIECLK   TG+ PP  +
Subjt:  MSTVDKMLIKGIRSFDTENRN--VITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR

Q9SL02 DNA repair protein RAD50

1.7e-23

86.67

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Query:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR
        MSTVDKMLIKGIRSFD EN+NV+TFF+PLTLIVG NGAGKT IIECLK+S TGELPPNAR
Subjt:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR

Q9UTJ8 DNA repair protein rad50

2.3e-15

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Query:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR
        MS +D+M I GIRSFD  +R  I FF PLTLIVG NG+GKT IIECLK + TG LPPN +
Subjt:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR

Arabidopsis top hits

e value

%identity

Alignment

AT1G73360.1 homeodomain GLABROUS 11

4.3e-09

75.76

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Query:  FKESPHPDEKQRQQLSKRLGLSPRKVKSWFQNR
        FKE PHPDEKQR QLS+ LGL+PR++K WFQNR
Subjt:  FKESPHPDEKQRQQLSKRLGLSPRKVKSWFQNR

AT1G79840.1 HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain

5.9e-11

85.29

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Query:  LFKESPHPDEKQRQQLSKRLGLSPRKVKSWFQNR
        LFKE+PHPDEKQRQQLSK+LGL+PR+VK WFQNR
Subjt:  LFKESPHPDEKQRQQLSKRLGLSPRKVKSWFQNR

AT1G79840.2 HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain

5.9e-11

85.29

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Query:  LFKESPHPDEKQRQQLSKRLGLSPRKVKSWFQNR
        LFKE+PHPDEKQRQQLSK+LGL+PR+VK WFQNR
Subjt:  LFKESPHPDEKQRQQLSKRLGLSPRKVKSWFQNR

AT2G31970.1 DNA repair-recombination protein (RAD50)

1.2e-24

86.67

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Query:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR
        MSTVDKMLIKGIRSFD EN+NV+TFF+PLTLIVG NGAGKT IIECLK+S TGELPPNAR
Subjt:  MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNAR

AT5G46880.1 homeobox-7

9.5e-09

73.53

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Query:  LFKESPHPDEKQRQQLSKRLGLSPRKVKSWFQNR
        LFKE+PHPD+KQR++LS  LGL PR+VK WFQNR
Subjt:  LFKESPHPDEKQRQQLSKRLGLSPRKVKSWFQNR

Sequences

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CDS sequence

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ATGAGTACAGTGGACAAAATGTTGATAAAAGGTATTCGGAGTTTCGACACCGAAAATAGGAACGTCATCACCTTCTTCAAGCCGCTTACTCTGATCGTTGGCCCCAACGG
CGCTGGGAAAACTATCATAATTGAATGCTTGAAACTCTCTTTTACCGGCGAGTTGCCTCCCAATGCCAGGCTATTTAAAGAATCACCACACCCGGATGAGAAGCAAAGGC
AGCAGCTCAGTAAGCGATTAGGACTTTCACCAAGGAAGGTCAAGTCTTGGTTCCAAAATCGTTGA

mRNA sequence

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Protein sequence

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MSTVDKMLIKGIRSFDTENRNVITFFKPLTLIVGPNGAGKTIIIECLKLSFTGELPPNARLFKESPHPDEKQRQQLSKRLGLSPRKVKSWFQNR

Spg031404 (gene) of Sponge gourd (cylindrica) v1 genome