CuGenDBv2

Gene ID	Spg031406
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	40S ribosomal protein S12
Genome location	scaffold11:37704391..37709523
RNA-Seq Expression	Spg031406
Synteny	Spg031406
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7035048.1 40S ribosomal protein S12 [Cucurbita argyrosperma subsp. argyrosperma]

1.9e-05

73.81

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Query:  LKMSMILSKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS
        +K+  I S+GK RKVVG  CVVVK FGEDHEALHIVQKHV S
Subjt:  LKMSMILSKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS

XP_022960502.1 40S ribosomal protein S12-like [Cucurbita moschata]

5.5e-05

82.86

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Query:  SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS
        S+GK RKVVG  CVVVK FGEDHEALHIVQKHV S
Subjt:  SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS

XP_023007085.1 40S ribosomal protein S12-like [Cucurbita maxima]

5.5e-05

82.86

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Query:  SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS
        S+GK RKVVG  CVVVK FGEDHEALHIVQKHV S
Subjt:  SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS

XP_023512603.1 40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo]

5.5e-05

82.86

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Query:  SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS
        S+GK RKVVG  CVVVK FGEDHEALHIVQKHV S
Subjt:  SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS

XP_038896811.1 40S ribosomal protein S12-like [Benincasa hispida]

5.5e-05

82.86

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Query:  SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS
        S+GK RKVVG  CVVVK FGEDHEALHIVQKHV S
Subjt:  SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UX10 40S ribosomal protein S12

2.7e-05

63.16

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Query:  LQLVPFKRFEGLRSNLKMSMILSKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS
        L  VP  +  G  S L    I S+GK RKVVG  CVVVK FGEDHEALHIVQKHV S
Subjt:  LQLVPFKRFEGLRSNLKMSMILSKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS

A0A5D3BJY5 40S ribosomal protein S12

2.7e-05

82.86

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Query:  SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS
        S+GK RKVVG  CVVVK FGEDHEALHIVQKHV S
Subjt:  SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS

A0A6J1G761 40S ribosomal protein S12

2.7e-05

82.86

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Query:  SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS
        S+GK RKVVG  CVVVK FGEDHEALHIVQKHV S
Subjt:  SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS

A0A6J1GQC3 40S ribosomal protein S12

2.7e-05

82.86

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Query:  SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS
        S+GK RKVVG  CVVVK FGEDHEALHIVQKHV S
Subjt:  SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS

A0A6J1L207 40S ribosomal protein S12

2.7e-05

82.86

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Query:  SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS
        S+GK RKVVG  CVVVK FGEDHEALHIVQKHV S
Subjt:  SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G15930.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

2.9e-04

47.46

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Query:  LRLQLVPFKRFEGLRSNLKMSMILSKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS
        +RL  VP  +  G  + L    I S+G  RKVVG  C+VVK FGE+  AL IV KH+ S
Subjt:  LRLQLVPFKRFEGLRSNLKMSMILSKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS

AT1G15930.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

2.9e-04

47.46

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Query:  LRLQLVPFKRFEGLRSNLKMSMILSKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS
        +RL  VP  +  G  + L    I S+G  RKVVG  C+VVK FGE+  AL IV KH+ S
Subjt:  LRLQLVPFKRFEGLRSNLKMSMILSKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS

AT2G32060.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

6.5e-04

57.14

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Query:  SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS
        S+G  RKVVG  C+V+K FGE+  AL+IV+KH+ S
Subjt:  SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS

AT2G32060.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

6.5e-04

57.14

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Query:  SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS
        S+G  RKVVG  C+V+K FGE+  AL+IV+KH+ S
Subjt:  SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS

AT2G32060.3 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

6.5e-04

57.14

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Query:  SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS
        S+G  RKVVG  C+V+K FGE+  AL+IV+KH+ S
Subjt:  SKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVS

Sequences

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CDS sequence

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ATGGGCCCTCTCTCGACGCCGTTATGCTGGCGTCGAGAGATGGGCCCTCTCTCGACGCCGTTATGCTGGCGTCGAGAGAGGCACATAATAATGAGGCTCGTGTGGGACCT
CTCTCGGCGTCATCTTAACGGCGTCGAGAGATGGCCCATCTCCCTCGACGCCATTAAGATGGCGTCGAGAGAGAGTGGACTTAAATCCCTAATTCTCTCTTTGTCTTCCT
CATTCGAACGATTAGGAGAAAACCAGCCCTTCCTCGTGCCTCCCTGCTTGCTGTCGCCCCGTCGTTCGCTCCGCCTCCGGCTGTCGTCCGGCCGTCTCGCTCCGCCTCCG
GCCGTCATCCCTCTCCGCCTCCAGTTGGTTCCTTTCAAAAGATTTGAAGGTTTAAGATCCAATCTCAAGATGAGCATGATTCTTTCTAAAGGAAAGACTAGGAAAGTTGT
TGGGTGGTTTTGTGTTGTAGTTAAGGTGTTCGGGGAGGATCACGAGGCACTTCACATTGTCCAGAAGCACGTTGTTTCCTTGTTGCTGCTGAACATATCGAACAGTCCTA
CCGCATCGGCAGAACCCCTTTTTGCCAACTCCATGTGGCGGCATCGACAGAAAATTGCCCGGTTTGCCTCCACGCAATTTTCTCTCGACGCGGTTTTTCAGCACGTCAGG
AAAAATGGCTTCTGTCGACTGGTTTCTTTCGACTTTCTTCCTGAAGCACTGAAGTGCGTCGGGAGAACCTCTGCCGACGCCGAATTGGACTTCTACCGACGTTTATGCGC
GTCGGGAAAGGCCCAGATGGTGCCCAAGCACCCTAGGGTTCACACCGTTAAGCCCATATGGTGCCCGAGCTCCCTAGGGTTCACCCCATTAGGCCCTAGGGAGCCCCAAT
CAGTGGAAGGAGAACCGCTGGCGACCGACTCAAGTGAGGAAAACCCTAACAGGAAGAGAGGTCACGTCTTCTCCATCTTCTACAAATTCACCCCTGGTGTCACGTGA

mRNA sequence

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Protein sequence

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MGPLSTPLCWRREMGPLSTPLCWRRERHIIMRLVWDLSRRHLNGVERWPISLDAIKMASRESGLKSLILSLSSSFERLGENQPFLVPPCLLSPRRSLRLRLSSGRLAPPP
AVIPLRLQLVPFKRFEGLRSNLKMSMILSKGKTRKVVGWFCVVVKVFGEDHEALHIVQKHVVSLLLLNISNSPTASAEPLFANSMWRHRQKIARFASTQFSLDAVFQHVR
KNGFCRLVSFDFLPEALKCVGRTSADAELDFYRRLCASGKAQMVPKHPRVHTVKPIWCPSSLGFTPLGPREPQSVEGEPLATDSSEENPNRKRGHVFSIFYKFTPGVT

Spg031406 (gene) of Sponge gourd (cylindrica) v1 genome