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Spg031407 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031407
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionE3 ubiquitin-protein ligase RHA1B
Genome locationscaffold11:37735741..37737218
RNA-Seq ExpressionSpg031407
SyntenySpg031407
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579522.1 Brassinosteroid-responsive RING protein 1, partial [Cucurbita argyrosperma subsp. sororia]2.1e-0770.59Show/hide
Query:  SFLKLSLTDLDPLFAAVLRETLPVVTFSELMDLPESCAVCLYEIPLRIDIR
        SF    LTDLDPL AAVLRE LPVV FSEL+D PESCAVCLYE     +IR
Subjt:  SFLKLSLTDLDPLFAAVLRETLPVVTFSELMDLPESCAVCLYEIPLRIDIR
KAG6606078.1 Brassinosteroid-responsive RING protein 1, partial [Cucurbita argyrosperma subsp. sororia]2.8e-0770.59Show/hide
Query:  SFLKLSLTDLDPLFAAVLRETLPVVTFSELMDLPESCAVCLYEIPLRIDIR
        SF    LTDLDPL AAVLRE LPVV FSEL+D PESCAVCLYE     +IR
Subjt:  SFLKLSLTDLDPLFAAVLRETLPVVTFSELMDLPESCAVCLYEIPLRIDIR
XP_022928753.1 E3 ubiquitin-protein ligase RHA1B [Cucurbita moschata]2.1e-0770.59Show/hide
Query:  SFLKLSLTDLDPLFAAVLRETLPVVTFSELMDLPESCAVCLYEIPLRIDIR
        SF    LTDLDPL AAVLRE LPVV FSEL+D PESCAVCLYE     +IR
Subjt:  SFLKLSLTDLDPLFAAVLRETLPVVTFSELMDLPESCAVCLYEIPLRIDIR
XP_022970110.1 E3 ubiquitin-protein ligase RHA1B-like [Cucurbita maxima]2.1e-0770.59Show/hide
Query:  SFLKLSLTDLDPLFAAVLRETLPVVTFSELMDLPESCAVCLYEIPLRIDIR
        SF    LTDLDPL AAVLRE LPVV FSEL+D PESCAVCLYE     +IR
Subjt:  SFLKLSLTDLDPLFAAVLRETLPVVTFSELMDLPESCAVCLYEIPLRIDIR
XP_023549736.1 E3 ubiquitin-protein ligase RHA1B [Cucurbita pepo subsp. pepo]2.1e-0770.59Show/hide
Query:  SFLKLSLTDLDPLFAAVLRETLPVVTFSELMDLPESCAVCLYEIPLRIDIR
        SF    LTDLDPL AAVLRE LPVV FSEL+D PESCAVCLYE     +IR
Subjt:  SFLKLSLTDLDPLFAAVLRETLPVVTFSELMDLPESCAVCLYEIPLRIDIR
TrEMBL top hitse value%identityAlignment
A0A6J1E2N7 E3 ubiquitin-protein ligase RHA1B5.7e-0668.18Show/hide
Query:  TDLDPLFAAVLRETLPVVTFSELMDLPESCAVCLYEIPLRIDIR
        +DLDP+ AAVLRE LPVV FSEL++ PESCAVCLYE     +IR
Subjt:  TDLDPLFAAVLRETLPVVTFSELMDLPESCAVCLYEIPLRIDIR
A0A6J1EQ05 E3 ubiquitin-protein ligase RHA1B1.0e-0770.59Show/hide
Query:  SFLKLSLTDLDPLFAAVLRETLPVVTFSELMDLPESCAVCLYEIPLRIDIR
        SF    LTDLDPL AAVLRE LPVV FSEL+D PESCAVCLYE     +IR
Subjt:  SFLKLSLTDLDPLFAAVLRETLPVVTFSELMDLPESCAVCLYEIPLRIDIR
A0A6J1H5J7 E3 ubiquitin-protein ligase RHA1B-like1.3e-0770.59Show/hide
Query:  SFLKLSLTDLDPLFAAVLRETLPVVTFSELMDLPESCAVCLYEIPLRIDIR
        SF    LTDLDPL AAVLRE LPVV FSEL+D PESCAVCLYE     +IR
Subjt:  SFLKLSLTDLDPLFAAVLRETLPVVTFSELMDLPESCAVCLYEIPLRIDIR
A0A6J1I1X7 E3 ubiquitin-protein ligase RHA1B-like1.0e-0770.59Show/hide
Query:  SFLKLSLTDLDPLFAAVLRETLPVVTFSELMDLPESCAVCLYEIPLRIDIR
        SF    LTDLDPL AAVLRE LPVV FSEL+D PESCAVCLYE     +IR
Subjt:  SFLKLSLTDLDPLFAAVLRETLPVVTFSELMDLPESCAVCLYEIPLRIDIR
A0A6J1K664 E3 ubiquitin-protein ligase RHA1B-like1.3e-0770.59Show/hide
Query:  SFLKLSLTDLDPLFAAVLRETLPVVTFSELMDLPESCAVCLYEIPLRIDIR
        SF    LTDLDPL AAVLRE LPVV FSEL+D PESCAVCLYE     +IR
Subjt:  SFLKLSLTDLDPLFAAVLRETLPVVTFSELMDLPESCAVCLYEIPLRIDIR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G61460.1 brassinosteroid-responsive RING-H21.1e-0448Show/hide
Query:  PLFAAVLRETLPVVTFSELM----DLPESCAVCLYEIPLRIDIRSERDLK
        P  A ++RE LPV+ F EL     DLPE+CAVCLYE     +IR  R+ +
Subjt:  PLFAAVLRETLPVVTFSELM----DLPESCAVCLYEIPLRIDIRSERDLK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGAGGCAATTACGGTAAAAAGTTTCTTGAAACTGTCGTTGACGGACCTCGATCCTCTCTTCGCCGCTGTTCTCCGTGAGACTCTACCCGTCGTGACGTTTTCCGA
GCTTATGGATCTGCCGGAGAGCTGCGCCGTGTGCCTCTACGAGATCCCCCTTCGAATCGATATCAGATCTGAGCGAGATCTGAAGTTCGCCAGTCCCCACACAAAACCCG
CGTGCGACGGCGATAGCGAGCGAGCCAACCTCGTTTTCTTCTCCTTTTTCCTCTTTGAGCTGATGTCGGGCGTGCGATGCCTGAAAAGAGGGGAGGAAGAAGAAAAAGAA
GAAGGGAATGGAAAAAAAATTCAGTCACCGGCGGCCGGCGACGGCGGCGATGGCGGCGAGCGGTGGCCGCCGGTCGCCGGAGATATGAAGAAGAAGAAGGAAGAGGATGA
AGGAGAAGAAGATGGAGAAGAAGAAGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTAGAGGCAATTACGGTAAAAAGTTTCTTGAAACTGTCGTTGACGGACCTCGATCCTCTCTTCGCCGCTGTTCTCCGTGAGACTCTACCCGTCGTGACGTTTTCCGA
GCTTATGGATCTGCCGGAGAGCTGCGCCGTGTGCCTCTACGAGATCCCCCTTCGAATCGATATCAGATCTGAGCGAGATCTGAAGTTCGCCAGTCCCCACACAAAACCCG
CGTGCGACGGCGATAGCGAGCGAGCCAACCTCGTTTTCTTCTCCTTTTTCCTCTTTGAGCTGATGTCGGGCGTGCGATGCCTGAAAAGAGGGGAGGAAGAAGAAAAAGAA
GAAGGGAATGGAAAAAAAATTCAGTCACCGGCGGCCGGCGACGGCGGCGATGGCGGCGAGCGGTGGCCGCCGGTCGCCGGAGATATGAAGAAGAAGAAGGAAGAGGATGA
AGGAGAAGAAGATGGAGAAGAAGAAGAGTAA
Protein sequenceShow/hide protein sequence
MLEAITVKSFLKLSLTDLDPLFAAVLRETLPVVTFSELMDLPESCAVCLYEIPLRIDIRSERDLKFASPHTKPACDGDSERANLVFFSFFLFELMSGVRCLKRGEEEEKE
EGNGKKIQSPAAGDGGDGGERWPPVAGDMKKKKEEDEGEEDGEEEE