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Spg031422 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031422
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLIM domain-containing protein PLIM2c-like
Genome locationscaffold11:43189068..43190417
RNA-Seq ExpressionSpg031422
SyntenySpg031422
Gene Ontology termsGO:0051017 - actin filament bundle assembly (biological process)
GO:0005886 - plasma membrane (cellular component)
GO:0015629 - actin cytoskeleton (cellular component)
GO:0046872 - metal ion binding (molecular function)
GO:0051015 - actin filament binding (molecular function)
InterPro domainsIPR001781 - Zinc finger, LIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582601.1 LIM domain-containing protein PLIM2c, partial [Cucurbita argyrosperma subsp. sororia]5.4e-3686.36Show/hide
Query:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNAPPADNAEEDGEPQTQSEDHAVEQS
        VTLEGECYHK CFRCAHGGCHLTH SYAALDGVLYCKHHFSQLFM+KGNY+HVL+AAANKK   PPAD AEED E Q QSEDHAVEQS
Subjt:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNAPPADNAEEDGEPQTQSEDHAVEQS

XP_022924601.1 LIM domain-containing protein PLIM2c-like [Cucurbita moschata]5.4e-3686.36Show/hide
Query:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNAPPADNAEEDGEPQTQSEDHAVEQS
        VTLEGECYHK CFRCAHGGCHLTH SYAALDGVLYCKHHFSQLFM+KGNY+HVL+AAANKK   PPAD AEED E Q QSEDHAVEQS
Subjt:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNAPPADNAEEDGEPQTQSEDHAVEQS

XP_022980415.1 LIM domain-containing protein PLIM2b-like [Cucurbita maxima]3.2e-3686.36Show/hide
Query:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNAPPADNAEEDGEPQTQSEDHAVEQS
        VTLEGECYHK CFRCAHGGCHLTH SYAALDGVLYCKHHFSQLFM+KGNY+HVL+AAANKK   PPAD AEED E Q QSEDHAVEQS
Subjt:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNAPPADNAEEDGEPQTQSEDHAVEQS

XP_038891725.1 LIM domain-containing protein PLIM2b-like isoform X1 [Benincasa hispida]3.7e-3784.09Show/hide
Query:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNAPPADNAEEDGEPQTQSEDHAVEQS
        VTLEGECYHK CFRCAHGGCHLTHCSYAALDGVLYCKHHF+QLFM+KGNY+HVL+AAANKKT  PPA++ EED +PQ QSE+HAVEQS
Subjt:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNAPPADNAEEDGEPQTQSEDHAVEQS

XP_038891791.1 LIM domain-containing protein PLIM2b-like isoform X2 [Benincasa hispida]3.7e-3784.09Show/hide
Query:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNAPPADNAEEDGEPQTQSEDHAVEQS
        VTLEGECYHK CFRCAHGGCHLTHCSYAALDGVLYCKHHF+QLFM+KGNY+HVL+AAANKKT  PPA++ EED +PQ QSE+HAVEQS
Subjt:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNAPPADNAEEDGEPQTQSEDHAVEQS

TrEMBL top hitse value%identityAlignment
A0A0A0L6A8 Uncharacterized protein2.9e-3580.68Show/hide
Query:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNAPPADNAEEDGEPQTQSEDHAVEQS
        V+LEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHF+QLFM+KGNY+HVL+AAANKKT  PPAD+ +ED EP  +S + AVEQS
Subjt:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNAPPADNAEEDGEPQTQSEDHAVEQS

A0A1S3AVG8 LIM domain-containing protein PLIM2b-like2.9e-3580.68Show/hide
Query:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNAPPADNAEEDGEPQTQSEDHAVEQS
        VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHF+QLFM+KGNY+HVL+AAANKKT  PPA++ +ED EP  +S + AVEQS
Subjt:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNAPPADNAEEDGEPQTQSEDHAVEQS

A0A5D3D2N0 LIM domain-containing protein PLIM2b-like2.9e-3580.68Show/hide
Query:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNAPPADNAEEDGEPQTQSEDHAVEQS
        VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHF+QLFM+KGNY+HVL+AAANKKT  PPA++ +ED EP  +S + AVEQS
Subjt:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNAPPADNAEEDGEPQTQSEDHAVEQS

A0A6J1E9W7 LIM domain-containing protein PLIM2c-like2.6e-3686.36Show/hide
Query:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNAPPADNAEEDGEPQTQSEDHAVEQS
        VTLEGECYHK CFRCAHGGCHLTH SYAALDGVLYCKHHFSQLFM+KGNY+HVL+AAANKK   PPAD AEED E Q QSEDHAVEQS
Subjt:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNAPPADNAEEDGEPQTQSEDHAVEQS

A0A6J1IW81 LIM domain-containing protein PLIM2b-like1.5e-3686.36Show/hide
Query:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNAPPADNAEEDGEPQTQSEDHAVEQS
        VTLEGECYHK CFRCAHGGCHLTH SYAALDGVLYCKHHFSQLFM+KGNY+HVL+AAANKK   PPAD AEED E Q QSEDHAVEQS
Subjt:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNAPPADNAEEDGEPQTQSEDHAVEQS

SwissProt top hitse value%identityAlignment
O04193 LIM domain-containing protein WLIM2a1.4e-1856.25Show/hide
Query:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNA
        VT+E +CYHK CF+C+HGGC ++  +YAAL+G+LYCKHHF+QLF  KG+Y+H++++A+ K+  A
Subjt:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNA

O80839 LIM domain-containing protein PLIM2a8.7e-2150.47Show/hide
Query:  STAKSSEKQNDLVTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNA------PPADNAEEDGE---PQTQ
        +T K +    + VT+EGE YHK CFRC H GC LTH SYA+L+GVLYCK HF+QLF+ KG+Y+HV QAAAN + +A      PP+D+ + D     P+ +
Subjt:  STAKSSEKQNDLVTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNA------PPADNAEEDGE---PQTQ

Query:  SEDHAVE
         +D A E
Subjt:  SEDHAVE

Q1ECF5 LIM domain-containing protein PLIM2b4.6e-2260.47Show/hide
Query:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNAPPADNAEEDGEPQTQSEDHAVE
        + +EGEC+HK CFRCAHGGC LTH SYA+LD VLYC+HHF+QLFM KGNY HVLQAA +++T       A  +  P   +ED AVE
Subjt:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNAPPADNAEEDGEPQTQSEDHAVE

Q500W4 LIM domain-containing protein PLIM2c2.1e-2262.64Show/hide
Query:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNAPPADNAE--EDGEPQTQSE--DHAVEQ
        +T+EGE YHK CFRCAH GC LTH SYAALDGVLYCK HFSQLF+ KGNY+HVLQAAAN + +    D  E  ED    T+ E  D A E+
Subjt:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNAPPADNAE--EDGEPQTQSE--DHAVEQ

Q9M047 LIM domain-containing protein WLIM2b2.6e-1754.69Show/hide
Query:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNA
        VT+E + YHK CF+C+HGGC ++  +YAAL+G+LYCKHHF+QLF  KG+Y+H++++A+ K++ A
Subjt:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNA

Arabidopsis top hitse value%identityAlignment
AT1G01780.1 GATA type zinc finger transcription factor family protein3.3e-2360.47Show/hide
Query:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNAPPADNAEEDGEPQTQSEDHAVE
        + +EGEC+HK CFRCAHGGC LTH SYA+LD VLYC+HHF+QLFM KGNY HVLQAA +++T       A  +  P   +ED AVE
Subjt:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNAPPADNAEEDGEPQTQSEDHAVE

AT2G39900.1 GATA type zinc finger transcription factor family protein9.8e-2056.25Show/hide
Query:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNA
        VT+E +CYHK CF+C+HGGC ++  +YAAL+G+LYCKHHF+QLF  KG+Y+H++++A+ K+  A
Subjt:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNA

AT2G45800.1 GATA type zinc finger transcription factor family protein6.1e-2250.47Show/hide
Query:  STAKSSEKQNDLVTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNA------PPADNAEEDGE---PQTQ
        +T K +    + VT+EGE YHK CFRC H GC LTH SYA+L+GVLYCK HF+QLF+ KG+Y+HV QAAAN + +A      PP+D+ + D     P+ +
Subjt:  STAKSSEKQNDLVTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNA------PPADNAEEDGE---PQTQ

Query:  SEDHAVE
         +D A E
Subjt:  SEDHAVE

AT2G45800.2 GATA type zinc finger transcription factor family protein6.1e-2250.47Show/hide
Query:  STAKSSEKQNDLVTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNA------PPADNAEEDGE---PQTQ
        +T K +    + VT+EGE YHK CFRC H GC LTH SYA+L+GVLYCK HF+QLF+ KG+Y+HV QAAAN + +A      PP+D+ + D     P+ +
Subjt:  STAKSSEKQNDLVTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNA------PPADNAEEDGE---PQTQ

Query:  SEDHAVE
         +D A E
Subjt:  SEDHAVE

AT3G61230.1 GATA type zinc finger transcription factor family protein1.5e-2362.64Show/hide
Query:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNAPPADNAE--EDGEPQTQSE--DHAVEQ
        +T+EGE YHK CFRCAH GC LTH SYAALDGVLYCK HFSQLF+ KGNY+HVLQAAAN + +    D  E  ED    T+ E  D A E+
Subjt:  VTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNAPPADNAE--EDGEPQTQSE--DHAVEQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAACAGCCAAATCTTCTGAGAAGCAAAATGATCTGGTTACACTGGAGGGAGAATGCTACCACAAAAAGTGCTTTAGATGTGCTCATGGTGGATGCCATTTGACACA
CTGTTCTTATGCTGCTCTTGATGGAGTCTTGTACTGCAAGCACCATTTTTCTCAGCTCTTTATGATCAAAGGCAACTATCACCATGTCCTTCAAGCTGCTGCAAACAAGA
AAACTAACGCGCCCCCTGCCGATAACGCCGAAGAAGATGGCGAGCCTCAGACGCAATCTGAGGATCACGCAGTAGAGCAATCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCAACAGCCAAATCTTCTGAGAAGCAAAATGATCTGGTTACACTGGAGGGAGAATGCTACCACAAAAAGTGCTTTAGATGTGCTCATGGTGGATGCCATTTGACACA
CTGTTCTTATGCTGCTCTTGATGGAGTCTTGTACTGCAAGCACCATTTTTCTCAGCTCTTTATGATCAAAGGCAACTATCACCATGTCCTTCAAGCTGCTGCAAACAAGA
AAACTAACGCGCCCCCTGCCGATAACGCCGAAGAAGATGGCGAGCCTCAGACGCAATCTGAGGATCACGCAGTAGAGCAATCTTAA
Protein sequenceShow/hide protein sequence
MSTAKSSEKQNDLVTLEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFSQLFMIKGNYHHVLQAAANKKTNAPPADNAEEDGEPQTQSEDHAVEQS