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Spg031460 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg031460
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold11:37185482..37191251
RNA-Seq ExpressionSpg031460
SyntenySpg031460
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN68820.1 hypothetical protein VITISV_009132 [Vitis vinifera]2.7e-0937.5Show/hide
Query:  LDTSLTANEIIDDRQARKKRGLMLKRDLQQDFDNADRGFLDAILQAKGFVFLWRKWILGCATAAKF--IAEGQKSGIEVVARAVSRGN
        LD +L ANE++D+++   K G++ K D ++ +D+ D GFLD +LQ KGF   WR WI GC +++ F  +  G   G    +R + +G+
Subjt:  LDTSLTANEIIDDRQARKKRGLMLKRDLQQDFDNADRGFLDAILQAKGFVFLWRKWILGCATAAKF--IAEGQKSGIEVVARAVSRGN

RVW25910.1 putative mitochondrial protein [Vitis vinifera]2.7e-0936.26Show/hide
Query:  ETDLDTSLTANEIIDDRQARKKRGLMLKRDLQQDFDNADRGFLDAILQAKGFVFLWRKWILGCATAAKF--IAEGQKSGIEVVARAVSRGN
        ET+LD  L ANE++D+++   + G++ K D ++ +D+ D GFLD +LQ KGF   WR W+ GC +++ F  +  G   G    +R + +G+
Subjt:  ETDLDTSLTANEIIDDRQARKKRGLMLKRDLQQDFDNADRGFLDAILQAKGFVFLWRKWILGCATAAKF--IAEGQKSGIEVVARAVSRGN

RVW93876.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]1.2e-0937.5Show/hide
Query:  LDTSLTANEIIDDRQARKKRGLMLKRDLQQDFDNADRGFLDAILQAKGFVFLWRKWILGCATAAKF--IAEGQKSGIEVVARAVSRGN
        LD  L ANE++D+++  ++ G++ K D ++ +D+ D GFLD +LQ KGF   WR WI GC +++ F  +  G + G    +R + +GN
Subjt:  LDTSLTANEIIDDRQARKKRGLMLKRDLQQDFDNADRGFLDAILQAKGFVFLWRKWILGCATAAKF--IAEGQKSGIEVVARAVSRGN

RVX11326.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]2.7e-0935.87Show/hide
Query:  RETDLDTSLTANEIIDDRQARKKRGLMLKRDLQQDFDNADRGFLDAILQAKGFVFLWRKWILGCATAAKF--IAEGQKSGIEVVARAVSRGN
        RET+LD  L ANE++D+++   + G++ K D ++ +D+ + GFLD +LQ KGF   WR W+ GC +++ F  +  G   G    +R + +G+
Subjt:  RETDLDTSLTANEIIDDRQARKKRGLMLKRDLQQDFDNADRGFLDAILQAKGFVFLWRKWILGCATAAKF--IAEGQKSGIEVVARAVSRGN

XP_022132189.1 uncharacterized protein LOC111005109 [Momordica charantia]3.8e-1143.68Show/hide
Query:  LDTSLTANEIIDDRQARKKRGLMLKRDLQQDFDNADRGFLDAILQAKGFVFLWRKWILGCATAAKF--IAEGQKSGIEVVARAVSRG
        LD SL ANEII+D   +K++G+++K D+++ FD  D  FLD +L AKGF   WRKWI GC +   F  I  G+  G    +R + +G
Subjt:  LDTSLTANEIIDDRQARKKRGLMLKRDLQQDFDNADRGFLDAILQAKGFVFLWRKWILGCATAAKF--IAEGQKSGIEVVARAVSRG

TrEMBL top hitse value%identityAlignment
A0A438CRR5 Putative mitochondrial protein1.3e-0936.26Show/hide
Query:  ETDLDTSLTANEIIDDRQARKKRGLMLKRDLQQDFDNADRGFLDAILQAKGFVFLWRKWILGCATAAKF--IAEGQKSGIEVVARAVSRGN
        ET+LD  L ANE++D+++   + G++ K D ++ +D+ D GFLD +LQ KGF   WR W+ GC +++ F  +  G   G    +R + +G+
Subjt:  ETDLDTSLTANEIIDDRQARKKRGLMLKRDLQQDFDNADRGFLDAILQAKGFVFLWRKWILGCATAAKF--IAEGQKSGIEVVARAVSRGN

A0A438IAY6 Transposon TX1 uncharacterized 149 kDa protein6.0e-1037.5Show/hide
Query:  LDTSLTANEIIDDRQARKKRGLMLKRDLQQDFDNADRGFLDAILQAKGFVFLWRKWILGCATAAKF--IAEGQKSGIEVVARAVSRGN
        LD  L ANE++D+++  ++ G++ K D ++ +D+ D GFLD +LQ KGF   WR WI GC +++ F  +  G + G    +R + +GN
Subjt:  LDTSLTANEIIDDRQARKKRGLMLKRDLQQDFDNADRGFLDAILQAKGFVFLWRKWILGCATAAKF--IAEGQKSGIEVVARAVSRGN

A0A438JQU8 LINE-1 retrotransposable element ORF2 protein1.3e-0935.87Show/hide
Query:  RETDLDTSLTANEIIDDRQARKKRGLMLKRDLQQDFDNADRGFLDAILQAKGFVFLWRKWILGCATAAKF--IAEGQKSGIEVVARAVSRGN
        RET+LD  L ANE++D+++   + G++ K D ++ +D+ + GFLD +LQ KGF   WR W+ GC +++ F  +  G   G    +R + +G+
Subjt:  RETDLDTSLTANEIIDDRQARKKRGLMLKRDLQQDFDNADRGFLDAILQAKGFVFLWRKWILGCATAAKF--IAEGQKSGIEVVARAVSRGN

A0A6J1BSD3 uncharacterized protein LOC1110051091.9e-1143.68Show/hide
Query:  LDTSLTANEIIDDRQARKKRGLMLKRDLQQDFDNADRGFLDAILQAKGFVFLWRKWILGCATAAKF--IAEGQKSGIEVVARAVSRG
        LD SL ANEII+D   +K++G+++K D+++ FD  D  FLD +L AKGF   WRKWI GC +   F  I  G+  G    +R + +G
Subjt:  LDTSLTANEIIDDRQARKKRGLMLKRDLQQDFDNADRGFLDAILQAKGFVFLWRKWILGCATAAKF--IAEGQKSGIEVVARAVSRG

A5C9Z3 Reverse transcriptase domain-containing protein1.3e-0937.5Show/hide
Query:  LDTSLTANEIIDDRQARKKRGLMLKRDLQQDFDNADRGFLDAILQAKGFVFLWRKWILGCATAAKF--IAEGQKSGIEVVARAVSRGN
        LD +L ANE++D+++   K G++ K D ++ +D+ D GFLD +LQ KGF   WR WI GC +++ F  +  G   G    +R + +G+
Subjt:  LDTSLTANEIIDDRQARKKRGLMLKRDLQQDFDNADRGFLDAILQAKGFVFLWRKWILGCATAAKF--IAEGQKSGIEVVARAVSRGN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGAAACCTCCCTCACCCACAGCTACAGCCTTCATTCGACAGCCTCCAGCCTCCACGCAGTCACAATCGCCGTCACCACGGGTGTTCGCCGCCGACAGCCTTGG
TTGCCGATGTTGCTGCCATCGTCAGCCTCTTCCTATTGGCCAGAGAGAGACAGATTTAGACACTTCACTGACAGCTAATGAAATCATCGATGATCGACAAGCTCGAAAGA
AGAGGGGTTTAATGCTTAAACGTGATTTGCAACAGGATTTTGATAATGCTGATAGAGGTTTTCTTGATGCAATTCTTCAAGCTAAAGGGTTTGTCTTTCTTTGGAGAAAA
TGGATACTTGGTTGTGCTACAGCAGCTAAGTTTATAGCAGAAGGCCAAAAGTCTGGAATTGAAGTGGTTGCACGTGCTGTCTCACGTGGGAATTTCATTAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAGAAACCTCCCTCACCCACAGCTACAGCCTTCATTCGACAGCCTCCAGCCTCCACGCAGTCACAATCGCCGTCACCACGGGTGTTCGCCGCCGACAGCCTTGG
TTGCCGATGTTGCTGCCATCGTCAGCCTCTTCCTATTGGCCAGAGAGAGACAGATTTAGACACTTCACTGACAGCTAATGAAATCATCGATGATCGACAAGCTCGAAAGA
AGAGGGGTTTAATGCTTAAACGTGATTTGCAACAGGATTTTGATAATGCTGATAGAGGTTTTCTTGATGCAATTCTTCAAGCTAAAGGGTTTGTCTTTCTTTGGAGAAAA
TGGATACTTGGTTGTGCTACAGCAGCTAAGTTTATAGCAGAAGGCCAAAAGTCTGGAATTGAAGTGGTTGCACGTGCTGTCTCACGTGGGAATTTCATTAATTAA
Protein sequenceShow/hide protein sequence
MKKKPPSPTATAFIRQPPASTQSQSPSPRVFAADSLGCRCCCHRQPLPIGQRETDLDTSLTANEIIDDRQARKKRGLMLKRDLQQDFDNADRGFLDAILQAKGFVFLWRK
WILGCATAAKFIAEGQKSGIEVVARAVSRGNFIN